Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_02610

Experiment: L-Glutamic (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO353_02605 and AO353_02610 overlap by 4 nucleotidesAO353_02610 and AO353_02615 are separated by 12 nucleotides AO353_02605: AO353_02605 - nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase, at 555,778 to 556,833 _02605 AO353_02610: AO353_02610 - adenosylcobinamide kinase, at 556,830 to 557,351 _02610 AO353_02615: AO353_02615 - cobyric acid synthase, at 557,364 to 558,815 _02615 Position (kb) 556 557 558Strain fitness (log2 ratio) -3 -2 -1 0 1at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.937 kb on + strand, within AO353_02605at 555.938 kb on - strand, within AO353_02605at 555.938 kb on - strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.038 kb on + strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.039 kb on - strand, within AO353_02605at 556.085 kb on + strand, within AO353_02605at 556.086 kb on - strand, within AO353_02605at 556.198 kb on - strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.296 kb on + strand, within AO353_02605at 556.323 kb on + strand, within AO353_02605at 556.378 kb on + strand, within AO353_02605at 556.379 kb on - strand, within AO353_02605at 556.379 kb on - strand, within AO353_02605at 556.833 kb on + strandat 556.833 kb on + strandat 556.833 kb on + strandat 556.834 kb on - strandat 556.841 kb on + strandat 556.841 kb on + strandat 556.841 kb on + strandat 556.841 kb on + strandat 556.842 kb on - strandat 556.842 kb on - strandat 556.842 kb on - strandat 556.936 kb on + strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 556.937 kb on - strand, within AO353_02610at 557.115 kb on + strand, within AO353_02610at 557.116 kb on - strand, within AO353_02610at 557.116 kb on - strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.263 kb on + strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.264 kb on - strand, within AO353_02610at 557.316 kb on - strandat 557.389 kb on + strandat 557.389 kb on + strandat 557.389 kb on + strandat 557.472 kb on + strandat 557.472 kb on + strandat 557.473 kb on - strandat 557.473 kb on - strandat 557.543 kb on - strand, within AO353_02615at 557.543 kb on - strand, within AO353_02615at 557.543 kb on - strand, within AO353_02615at 557.657 kb on - strand, within AO353_02615at 557.759 kb on + strand, within AO353_02615at 557.759 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.832 kb on + strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.833 kb on - strand, within AO353_02615at 557.871 kb on - strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.902 kb on + strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 557.903 kb on - strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.142 kb on + strand, within AO353_02615at 558.143 kb on - strand, within AO353_02615at 558.143 kb on - strand, within AO353_02615at 558.306 kb on + strand, within AO353_02615

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (N)
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555,937 + AO353_02605 0.15 -1.9
555,937 + AO353_02605 0.15 -1.5
555,937 + AO353_02605 0.15 -2.0
555,937 + AO353_02605 0.15 +0.1
555,937 + AO353_02605 0.15 -0.6
555,937 + AO353_02605 0.15 -2.3
555,937 + AO353_02605 0.15 -1.4
555,938 - AO353_02605 0.15 -3.5
555,938 - AO353_02605 0.15 -0.5
556,038 + AO353_02605 0.25 -1.8
556,038 + AO353_02605 0.25 -2.4
556,038 + AO353_02605 0.25 +1.0
556,038 + AO353_02605 0.25 -0.2
556,038 + AO353_02605 0.25 -0.3
556,038 + AO353_02605 0.25 -1.6
556,039 - AO353_02605 0.25 +0.0
556,039 - AO353_02605 0.25 -0.7
556,039 - AO353_02605 0.25 -1.0
556,039 - AO353_02605 0.25 -1.6
556,039 - AO353_02605 0.25 -2.2
556,039 - AO353_02605 0.25 -2.0
556,039 - AO353_02605 0.25 -1.5
556,039 - AO353_02605 0.25 -1.0
556,039 - AO353_02605 0.25 +0.2
556,085 + AO353_02605 0.29 -1.6
556,086 - AO353_02605 0.29 -0.6
556,198 - AO353_02605 0.40 -2.3
556,296 + AO353_02605 0.49 -0.7
556,296 + AO353_02605 0.49 +1.0
556,296 + AO353_02605 0.49 -0.8
556,296 + AO353_02605 0.49 -1.5
556,323 + AO353_02605 0.52 -0.5
556,378 + AO353_02605 0.57 -1.6
556,379 - AO353_02605 0.57 -2.9
556,379 - AO353_02605 0.57 -0.8
556,833 + +1.3
556,833 + -0.3
556,833 + -1.5
556,834 - -1.5
556,841 + -0.8
556,841 + -1.0
556,841 + -2.5
556,841 + -0.9
556,842 - +0.3
556,842 - -0.2
556,842 - -0.3
556,936 + AO353_02610 0.20 -1.0
556,937 - AO353_02610 0.20 -0.0
556,937 - AO353_02610 0.20 -2.3
556,937 - AO353_02610 0.20 +0.5
556,937 - AO353_02610 0.20 -1.0
557,115 + AO353_02610 0.55 -1.4
557,116 - AO353_02610 0.55 -1.2
557,116 - AO353_02610 0.55 +0.2
557,263 + AO353_02610 0.83 -0.9
557,263 + AO353_02610 0.83 -2.2
557,263 + AO353_02610 0.83 +0.2
557,263 + AO353_02610 0.83 -2.4
557,263 + AO353_02610 0.83 -1.0
557,263 + AO353_02610 0.83 -3.2
557,263 + AO353_02610 0.83 -0.7
557,263 + AO353_02610 0.83 -1.3
557,263 + AO353_02610 0.83 -0.5
557,263 + AO353_02610 0.83 -2.5
557,263 + AO353_02610 0.83 -1.3
557,263 + AO353_02610 0.83 -1.4
557,263 + AO353_02610 0.83 -1.9
557,264 - AO353_02610 0.83 -1.4
557,264 - AO353_02610 0.83 -2.1
557,264 - AO353_02610 0.83 -1.5
557,264 - AO353_02610 0.83 -1.8
557,264 - AO353_02610 0.83 -1.6
557,264 - AO353_02610 0.83 -2.3
557,264 - AO353_02610 0.83 -0.0
557,264 - AO353_02610 0.83 -1.8
557,316 - -1.5
557,389 + -0.1
557,389 + -2.9
557,389 + -1.0
557,472 + -1.4
557,472 + -1.8
557,473 - -0.5
557,473 - -0.8
557,543 - AO353_02615 0.12 -1.9
557,543 - AO353_02615 0.12 -2.5
557,543 - AO353_02615 0.12 -2.7
557,657 - AO353_02615 0.20 -1.9
557,759 + AO353_02615 0.27 -1.0
557,759 + AO353_02615 0.27 -1.7
557,832 + AO353_02615 0.32 -0.8
557,832 + AO353_02615 0.32 -2.3
557,832 + AO353_02615 0.32 -0.0
557,832 + AO353_02615 0.32 -0.2
557,832 + AO353_02615 0.32 -0.0
557,832 + AO353_02615 0.32 -3.5
557,832 + AO353_02615 0.32 -2.6
557,833 - AO353_02615 0.32 -0.2
557,833 - AO353_02615 0.32 -1.0
557,833 - AO353_02615 0.32 -2.3
557,833 - AO353_02615 0.32 -1.8
557,833 - AO353_02615 0.32 -1.4
557,833 - AO353_02615 0.32 -1.3
557,833 - AO353_02615 0.32 -1.0
557,833 - AO353_02615 0.32 -2.2
557,833 - AO353_02615 0.32 -2.6
557,871 - AO353_02615 0.35 +0.1
557,902 + AO353_02615 0.37 -1.9
557,902 + AO353_02615 0.37 -1.4
557,902 + AO353_02615 0.37 -1.2
557,902 + AO353_02615 0.37 -1.1
557,903 - AO353_02615 0.37 -0.3
557,903 - AO353_02615 0.37 -1.1
557,903 - AO353_02615 0.37 -1.8
557,903 - AO353_02615 0.37 -1.5
558,142 + AO353_02615 0.54 -0.0
558,142 + AO353_02615 0.54 -0.2
558,142 + AO353_02615 0.54 -2.9
558,142 + AO353_02615 0.54 -0.6
558,143 - AO353_02615 0.54 -2.0
558,143 - AO353_02615 0.54 -1.5
558,306 + AO353_02615 0.65 -0.8

Or see this region's nucleotide sequence