Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22845

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntABZR87_RS22830 and ABZR87_RS22835 overlap by 1 nucleotidesABZR87_RS22835 and ABZR87_RS22840 are separated by 45 nucleotidesABZR87_RS22840 and ABZR87_RS22845 are separated by 35 nucleotidesABZR87_RS22845 and ABZR87_RS22850 are separated by 207 nucleotidesABZR87_RS22850 and ABZR87_RS22855 are separated by 69 nucleotides ABZR87_RS22830: ABZR87_RS22830 - Crp/Fnr family transcriptional regulator, at 1,484,297 to 1,484,986 _RS22830 ABZR87_RS22835: ABZR87_RS22835 - 2OG-Fe(II) oxygenase, at 1,484,986 to 1,485,378 _RS22835 ABZR87_RS22840: ABZR87_RS22840 - DUF2164 domain-containing protein, at 1,485,424 to 1,485,687 _RS22840 ABZR87_RS22845: ABZR87_RS22845 - alpha,alpha-trehalase TreA, at 1,485,723 to 1,487,336 _RS22845 ABZR87_RS22850: ABZR87_RS22850 - dihydrofolate reductase family protein, at 1,487,544 to 1,488,104 _RS22850 ABZR87_RS22855: ABZR87_RS22855 - GGDEF domain-containing protein, at 1,488,174 to 1,489,346 _RS22855 Position (kb) 1485 1486 1487 1488Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1485.047 kb on + strand, within ABZR87_RS22835at 1485.047 kb on + strand, within ABZR87_RS22835at 1485.048 kb on - strand, within ABZR87_RS22835at 1485.048 kb on - strand, within ABZR87_RS22835at 1485.048 kb on - strand, within ABZR87_RS22835at 1485.050 kb on - strand, within ABZR87_RS22835at 1485.261 kb on - strand, within ABZR87_RS22835at 1485.311 kb on + strand, within ABZR87_RS22835at 1485.414 kb on + strandat 1485.426 kb on - strandat 1485.479 kb on + strand, within ABZR87_RS22840at 1485.479 kb on + strand, within ABZR87_RS22840at 1485.480 kb on - strand, within ABZR87_RS22840at 1485.539 kb on + strand, within ABZR87_RS22840at 1485.629 kb on + strand, within ABZR87_RS22840at 1485.629 kb on + strand, within ABZR87_RS22840at 1485.724 kb on + strandat 1485.724 kb on + strandat 1485.725 kb on - strandat 1485.725 kb on - strandat 1485.725 kb on - strandat 1485.739 kb on + strandat 1485.740 kb on - strandat 1485.740 kb on - strandat 1485.799 kb on + strandat 1485.800 kb on - strandat 1485.842 kb on - strandat 1485.872 kb on - strandat 1485.872 kb on - strandat 1485.872 kb on - strandat 1486.114 kb on + strand, within ABZR87_RS22845at 1486.115 kb on - strand, within ABZR87_RS22845at 1486.115 kb on - strand, within ABZR87_RS22845at 1486.174 kb on + strand, within ABZR87_RS22845at 1486.240 kb on + strand, within ABZR87_RS22845at 1486.489 kb on + strand, within ABZR87_RS22845at 1486.490 kb on - strand, within ABZR87_RS22845at 1486.525 kb on + strand, within ABZR87_RS22845at 1486.612 kb on + strand, within ABZR87_RS22845at 1486.612 kb on + strand, within ABZR87_RS22845at 1486.613 kb on - strand, within ABZR87_RS22845at 1486.619 kb on - strand, within ABZR87_RS22845at 1486.619 kb on - strand, within ABZR87_RS22845at 1486.726 kb on + strand, within ABZR87_RS22845at 1486.727 kb on - strand, within ABZR87_RS22845at 1486.729 kb on + strand, within ABZR87_RS22845at 1486.729 kb on + strand, within ABZR87_RS22845at 1486.730 kb on - strand, within ABZR87_RS22845at 1486.774 kb on + strand, within ABZR87_RS22845at 1486.846 kb on + strand, within ABZR87_RS22845at 1486.846 kb on + strand, within ABZR87_RS22845at 1486.846 kb on + strand, within ABZR87_RS22845at 1486.846 kb on + strand, within ABZR87_RS22845at 1486.846 kb on + strand, within ABZR87_RS22845at 1486.846 kb on + strand, within ABZR87_RS22845at 1486.846 kb on + strand, within ABZR87_RS22845at 1486.847 kb on - strand, within ABZR87_RS22845at 1486.847 kb on - strand, within ABZR87_RS22845at 1486.847 kb on - strand, within ABZR87_RS22845at 1486.847 kb on - strand, within ABZR87_RS22845at 1486.847 kb on - strand, within ABZR87_RS22845at 1486.851 kb on - strand, within ABZR87_RS22845at 1486.859 kb on - strand, within ABZR87_RS22845at 1486.861 kb on + strand, within ABZR87_RS22845at 1486.861 kb on + strand, within ABZR87_RS22845at 1486.861 kb on + strand, within ABZR87_RS22845at 1486.862 kb on - strand, within ABZR87_RS22845at 1486.862 kb on - strand, within ABZR87_RS22845at 1486.862 kb on - strand, within ABZR87_RS22845at 1486.894 kb on + strand, within ABZR87_RS22845at 1486.894 kb on + strand, within ABZR87_RS22845at 1487.038 kb on + strand, within ABZR87_RS22845at 1487.039 kb on - strand, within ABZR87_RS22845at 1487.039 kb on - strand, within ABZR87_RS22845at 1487.455 kb on + strandat 1487.564 kb on - strandat 1487.591 kb on - strandat 1487.881 kb on + strand, within ABZR87_RS22850at 1487.944 kb on + strand, within ABZR87_RS22850at 1487.945 kb on - strand, within ABZR87_RS22850at 1487.995 kb on + strand, within ABZR87_RS22850at 1487.995 kb on + strand, within ABZR87_RS22850at 1487.996 kb on - strand, within ABZR87_RS22850at 1487.996 kb on - strand, within ABZR87_RS22850at 1488.085 kb on + strandat 1488.086 kb on - strandat 1488.086 kb on - strandat 1488.086 kb on - strandat 1488.086 kb on - strandat 1488.089 kb on - strandat 1488.089 kb on - strandat 1488.089 kb on - strandat 1488.089 kb on - strandat 1488.120 kb on + strandat 1488.120 kb on + strandat 1488.120 kb on + strandat 1488.139 kb on - strandat 1488.175 kb on + strandat 1488.175 kb on + strandat 1488.176 kb on - strandat 1488.176 kb on - strandat 1488.244 kb on + strandat 1488.245 kb on - strandat 1488.325 kb on + strand, within ABZR87_RS22855at 1488.326 kb on - strand, within ABZR87_RS22855at 1488.326 kb on - strand, within ABZR87_RS22855at 1488.326 kb on - strand, within ABZR87_RS22855at 1488.326 kb on - strand, within ABZR87_RS22855at 1488.326 kb on - strand, within ABZR87_RS22855

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
remove
1,485,047 + ABZR87_RS22835 0.16 +0.4
1,485,047 + ABZR87_RS22835 0.16 +0.6
1,485,048 - ABZR87_RS22835 0.16 -0.6
1,485,048 - ABZR87_RS22835 0.16 +1.6
1,485,048 - ABZR87_RS22835 0.16 -0.5
1,485,050 - ABZR87_RS22835 0.16 -0.5
1,485,261 - ABZR87_RS22835 0.70 +0.0
1,485,311 + ABZR87_RS22835 0.83 +0.7
1,485,414 + +0.5
1,485,426 - -0.3
1,485,479 + ABZR87_RS22840 0.21 +0.8
1,485,479 + ABZR87_RS22840 0.21 +0.1
1,485,480 - ABZR87_RS22840 0.21 +2.0
1,485,539 + ABZR87_RS22840 0.44 +0.3
1,485,629 + ABZR87_RS22840 0.78 -0.6
1,485,629 + ABZR87_RS22840 0.78 -0.3
1,485,724 + +0.6
1,485,724 + -0.3
1,485,725 - +1.2
1,485,725 - -1.9
1,485,725 - +0.5
1,485,739 + -0.9
1,485,740 - +2.6
1,485,740 - -0.9
1,485,799 + -0.1
1,485,800 - -1.9
1,485,842 - -0.2
1,485,872 - -0.6
1,485,872 - -1.4
1,485,872 - -1.2
1,486,114 + ABZR87_RS22845 0.24 -0.5
1,486,115 - ABZR87_RS22845 0.24 +0.2
1,486,115 - ABZR87_RS22845 0.24 -0.2
1,486,174 + ABZR87_RS22845 0.28 -0.2
1,486,240 + ABZR87_RS22845 0.32 -2.5
1,486,489 + ABZR87_RS22845 0.47 -0.5
1,486,490 - ABZR87_RS22845 0.48 +0.9
1,486,525 + ABZR87_RS22845 0.50 +1.9
1,486,612 + ABZR87_RS22845 0.55 +0.2
1,486,612 + ABZR87_RS22845 0.55 +0.1
1,486,613 - ABZR87_RS22845 0.55 -1.8
1,486,619 - ABZR87_RS22845 0.56 +0.7
1,486,619 - ABZR87_RS22845 0.56 -0.1
1,486,726 + ABZR87_RS22845 0.62 +2.9
1,486,727 - ABZR87_RS22845 0.62 +0.0
1,486,729 + ABZR87_RS22845 0.62 -0.2
1,486,729 + ABZR87_RS22845 0.62 -0.2
1,486,730 - ABZR87_RS22845 0.62 +0.4
1,486,774 + ABZR87_RS22845 0.65 -0.6
1,486,846 + ABZR87_RS22845 0.70 -0.6
1,486,846 + ABZR87_RS22845 0.70 -0.7
1,486,846 + ABZR87_RS22845 0.70 +0.9
1,486,846 + ABZR87_RS22845 0.70 +0.2
1,486,846 + ABZR87_RS22845 0.70 -0.3
1,486,846 + ABZR87_RS22845 0.70 -0.2
1,486,846 + ABZR87_RS22845 0.70 +0.3
1,486,847 - ABZR87_RS22845 0.70 -0.1
1,486,847 - ABZR87_RS22845 0.70 +0.3
1,486,847 - ABZR87_RS22845 0.70 -0.5
1,486,847 - ABZR87_RS22845 0.70 +0.2
1,486,847 - ABZR87_RS22845 0.70 -0.8
1,486,851 - ABZR87_RS22845 0.70 -0.7
1,486,859 - ABZR87_RS22845 0.70 +0.6
1,486,861 + ABZR87_RS22845 0.71 +1.5
1,486,861 + ABZR87_RS22845 0.71 +1.5
1,486,861 + ABZR87_RS22845 0.71 +1.8
1,486,862 - ABZR87_RS22845 0.71 -0.1
1,486,862 - ABZR87_RS22845 0.71 -1.3
1,486,862 - ABZR87_RS22845 0.71 -0.6
1,486,894 + ABZR87_RS22845 0.73 +0.7
1,486,894 + ABZR87_RS22845 0.73 -0.1
1,487,038 + ABZR87_RS22845 0.81 +1.1
1,487,039 - ABZR87_RS22845 0.82 -0.6
1,487,039 - ABZR87_RS22845 0.82 -1.4
1,487,455 + +1.4
1,487,564 - +1.8
1,487,591 - +0.8
1,487,881 + ABZR87_RS22850 0.60 -0.5
1,487,944 + ABZR87_RS22850 0.71 +0.2
1,487,945 - ABZR87_RS22850 0.71 +2.1
1,487,995 + ABZR87_RS22850 0.80 -0.2
1,487,995 + ABZR87_RS22850 0.80 +2.3
1,487,996 - ABZR87_RS22850 0.81 -0.2
1,487,996 - ABZR87_RS22850 0.81 +0.4
1,488,085 + -0.6
1,488,086 - +0.6
1,488,086 - -0.7
1,488,086 - -0.3
1,488,086 - -0.1
1,488,089 - -0.0
1,488,089 - +0.6
1,488,089 - +1.0
1,488,089 - +1.6
1,488,120 + +0.5
1,488,120 + -0.0
1,488,120 + -0.1
1,488,139 - -1.3
1,488,175 + +0.4
1,488,175 + -0.2
1,488,176 - -0.2
1,488,176 - +0.3
1,488,244 + -0.2
1,488,245 - +0.1
1,488,325 + ABZR87_RS22855 0.13 +1.1
1,488,326 - ABZR87_RS22855 0.13 +1.0
1,488,326 - ABZR87_RS22855 0.13 +0.0
1,488,326 - ABZR87_RS22855 0.13 +0.4
1,488,326 - ABZR87_RS22855 0.13 +0.5
1,488,326 - ABZR87_RS22855 0.13 -0.7

Or see this region's nucleotide sequence