Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS22185

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,340,627	+				+3.8
1,340,628	-				+0.8
1,340,628	-				+1.3
1,340,628	-				+3.0
1,340,628	-				+0.2
1,340,628	-				+1.1
1,340,776	+				+0.0
1,340,776	+				-0.1
1,340,776	+				+0.8
1,340,777	-				-1.7
1,340,779	-				-1.0
1,340,797	+				-0.7
1,340,797	+				-1.5
1,340,815	+				+0.7
1,340,815	+				+0.7
1,340,815	+				-0.1
1,340,815	+				-0.2
1,340,815	+				+0.2
1,340,815	+				+0.7
1,340,815	+				-1.2
1,340,816	-				-0.3
1,340,816	-				+0.3
1,340,816	-				-0.9
1,340,816	-				-0.8
1,340,816	-				-0.7
1,340,816	-				-0.6
1,340,817	+				+1.9
1,340,817	+				-0.6
1,340,817	+				-2.0
1,340,817	+				+0.6
1,340,817	+				+1.4
1,340,818	-				+0.1
1,340,818	-				-0.6
1,340,818	-				-0.2
1,340,819	+				+1.0
1,340,819	+				+0.2
1,340,819	+				+1.5
1,340,819	+				+0.2
1,340,819	+				+2.3
1,340,819	+				-0.4
1,340,819	+				-1.7
1,340,820	-				+1.8
1,340,820	-				+0.5
1,340,820	-				-0.8
1,341,304	+		ABZR87_RS22180	0.58	+0.4
1,341,304	+		ABZR87_RS22180	0.58	+0.4
1,341,304	+		ABZR87_RS22180	0.58	-1.3
1,341,305	-		ABZR87_RS22180	0.59	-1.1
1,341,305	-		ABZR87_RS22180	0.59	-2.2
1,341,481	+		ABZR87_RS22180	0.86	+1.0
1,341,481	+		ABZR87_RS22180	0.86	-0.6
1,341,482	-		ABZR87_RS22180	0.86	-0.3
1,341,538	+				+0.4
1,341,538	+				+0.5
1,341,538	+				-0.1
1,341,538	+				-0.6
1,341,538	+				-1.3
1,341,538	+				-0.1
1,341,538	+				+0.5
1,341,539	-				-0.4
1,341,539	-				+0.1
1,341,539	-				-0.7
1,341,539	-				-0.6
1,341,539	-				+0.7
1,341,539	-				-0.0
1,341,539	-				-0.4
1,341,539	-				-2.2
1,341,539	-				+0.5
1,341,539	-				-1.4
1,341,539	-				+0.3
1,341,539	-				-1.4
1,341,539	-				-1.5
1,341,539	-				-0.5
1,341,539	-				-2.1
1,341,539	-				-0.2
1,341,574	+				+0.7
1,341,574	+				-0.1
1,341,576	+				+0.1
1,341,576	+				+0.0
1,341,576	+				+0.5
1,341,577	-				+0.5
1,341,577	-				-0.5
1,341,577	-				-0.0
1,341,667	+				-0.2
1,341,667	+				-0.6
1,341,668	-				-0.1
1,341,668	-				-1.2
1,341,668	-				-1.1
1,341,668	-				+0.1
1,341,668	-				-0.5
1,341,668	-				-1.2
1,341,871	+		ABZR87_RS22185	0.17	-0.8
1,341,887	-		ABZR87_RS22185	0.18	+0.7
1,341,918	+		ABZR87_RS22185	0.20	-0.6
1,342,312	+		ABZR87_RS22185	0.43	-1.6
1,342,313	-		ABZR87_RS22185	0.43	-0.4
1,342,321	+		ABZR87_RS22185	0.43	-3.1
1,342,321	+		ABZR87_RS22185	0.43	-1.4
1,342,321	+		ABZR87_RS22185	0.43	-1.2
1,342,322	-		ABZR87_RS22185	0.43	-0.9
1,342,404	-		ABZR87_RS22185	0.48	-0.4
1,342,444	+		ABZR87_RS22185	0.50	-0.0
1,342,444	+		ABZR87_RS22185	0.50	+0.1
1,342,444	+		ABZR87_RS22185	0.50	-0.6
1,342,444	+		ABZR87_RS22185	0.50	+0.2
1,342,444	+		ABZR87_RS22185	0.50	+0.8
1,342,445	-		ABZR87_RS22185	0.50	-1.1
1,342,445	-		ABZR87_RS22185	0.50	+1.1
1,342,531	+		ABZR87_RS22185	0.55	-0.6
1,342,531	+		ABZR87_RS22185	0.55	+2.4
1,342,532	-		ABZR87_RS22185	0.55	-0.4
1,342,532	-		ABZR87_RS22185	0.55	-0.4
1,342,532	-		ABZR87_RS22185	0.55	+3.8
1,342,532	-		ABZR87_RS22185	0.55	+0.4
1,342,532	-		ABZR87_RS22185	0.55	+1.0
1,342,532	-		ABZR87_RS22185	0.55	-1.7
1,342,954	+		ABZR87_RS22185	0.80	+0.2
1,343,017	+		ABZR87_RS22185	0.83	-1.5
1,343,017	+		ABZR87_RS22185	0.83	-0.2
1,343,017	+		ABZR87_RS22185	0.83	+0.0
1,343,017	+		ABZR87_RS22185	0.83	+0.1
1,343,017	+		ABZR87_RS22185	0.83	-0.2
1,343,017	+		ABZR87_RS22185	0.83	+0.1
1,343,017	+		ABZR87_RS22185	0.83	+0.2
1,343,018	-		ABZR87_RS22185	0.83	-1.3
1,343,018	-		ABZR87_RS22185	0.83	+3.4
1,343,018	-		ABZR87_RS22185	0.83	-0.0
1,343,018	-		ABZR87_RS22185	0.83	+2.8
1,343,018	-		ABZR87_RS22185	0.83	+0.1
1,343,018	-		ABZR87_RS22185	0.83	+0.2
1,343,251	+				+0.6
1,343,251	+				+1.2
1,343,251	+				+0.6
1,343,251	+				-0.7
1,343,252	-				-0.0
1,343,252	-				-0.3
1,343,252	-				-0.3
1,343,252	-				-0.1
1,343,252	-				+1.5
1,343,252	-				-0.5
1,343,252	-				+0.6
1,343,495	+				-0.1
1,343,495	+				+0.3
1,343,495	+				-1.0
1,343,495	+				+1.0
1,343,495	+				-1.3
1,343,495	+				+0.6
1,343,495	+				-0.7
1,343,495	+				-0.4
1,343,496	-				+0.4
1,343,496	-				+0.2
1,343,496	-				+0.7
1,343,496	-				+0.9
1,343,568	+				-0.4
1,343,568	+				-1.0
1,343,568	+				-0.4
1,343,568	+				+1.0
1,343,568	+				+0.2
1,343,569	-				+0.6
1,343,569	-				-1.4
1,343,569	-				-1.0
1,343,569	-				-0.9
1,343,577	-				-0.6
1,343,577	-				-1.2
1,343,577	-				+0.6
1,343,587	+				+0.2
1,343,587	+				+0.7
1,343,588	-				-0.1
1,343,588	-				-0.3
1,343,588	-				-1.2
1,343,588	-				-0.7
1,343,649	-				+0.8
1,343,666	+				+1.9
1,343,666	+				+0.3
1,343,666	+				-1.0
1,343,667	-				+2.6
1,343,667	-				+0.5
1,343,760	+				-0.5
1,343,760	+				+2.0
1,343,760	+				-0.1
1,343,760	+				-0.8
1,343,760	+				+0.4
1,343,761	-				+1.3
1,343,761	-				+3.5
1,343,804	+				+0.3
1,343,804	+				+0.1
1,343,805	-				+3.4
1,344,069	+		ABZR87_RS22190	0.49	+1.2
1,344,070	-		ABZR87_RS22190	0.50	+2.1
1,344,132	+		ABZR87_RS22190	0.62	-0.9
1,344,133	-		ABZR87_RS22190	0.62	+1.7
1,344,133	-		ABZR87_RS22190	0.62	+4.8
1,344,133	-		ABZR87_RS22190	0.62	+1.8
1,344,133	-		ABZR87_RS22190	0.62	+2.5
1,344,133	-		ABZR87_RS22190	0.62	+1.8
1,344,134	+		ABZR87_RS22190	0.62	-0.5
1,344,134	+		ABZR87_RS22190	0.62	+0.6
1,344,135	-		ABZR87_RS22190	0.63	+2.3