Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS21600

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS21590 and ABZR87_RS21595 are separated by 74 nucleotidesABZR87_RS21595 and ABZR87_RS21600 are separated by 97 nucleotidesABZR87_RS21600 and ABZR87_RS21605 are separated by 0 nucleotidesABZR87_RS21605 and ABZR87_RS21610 overlap by 38 nucleotides ABZR87_RS21590: ABZR87_RS21590 - NAD(P)H-dependent oxidoreductase, at 1,226,045 to 1,226,689 _RS21590 ABZR87_RS21595: ABZR87_RS21595 - Rrf2 family transcriptional regulator, at 1,226,764 to 1,227,201 _RS21595 ABZR87_RS21600: ABZR87_RS21600 - NAD(P)-dependent oxidoreductase, at 1,227,299 to 1,227,910 _RS21600 ABZR87_RS21605: ABZR87_RS21605 - hypothetical protein, at 1,227,911 to 1,228,519 _RS21605 ABZR87_RS21610: ABZR87_RS21610 - ATP-binding protein, at 1,228,482 to 1,229,969 _RS21610 Position (kb) 1227 1228Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 1226.324 kb on + strand, within ABZR87_RS21590at 1226.324 kb on + strand, within ABZR87_RS21590at 1226.325 kb on - strand, within ABZR87_RS21590at 1226.325 kb on - strand, within ABZR87_RS21590at 1226.474 kb on + strand, within ABZR87_RS21590at 1226.509 kb on - strand, within ABZR87_RS21590at 1226.547 kb on - strand, within ABZR87_RS21590at 1226.547 kb on - strand, within ABZR87_RS21590at 1226.547 kb on - strand, within ABZR87_RS21590at 1226.734 kb on + strandat 1226.758 kb on - strandat 1226.769 kb on + strandat 1226.769 kb on + strandat 1226.770 kb on - strandat 1226.770 kb on - strandat 1226.770 kb on - strandat 1226.770 kb on - strandat 1226.799 kb on + strandat 1227.002 kb on + strand, within ABZR87_RS21595at 1227.220 kb on + strandat 1227.257 kb on + strandat 1227.259 kb on + strandat 1227.497 kb on + strand, within ABZR87_RS21600at 1227.497 kb on + strand, within ABZR87_RS21600at 1227.498 kb on - strand, within ABZR87_RS21600at 1227.498 kb on - strand, within ABZR87_RS21600at 1227.653 kb on + strand, within ABZR87_RS21600at 1227.654 kb on - strand, within ABZR87_RS21600at 1227.654 kb on - strand, within ABZR87_RS21600at 1227.654 kb on - strand, within ABZR87_RS21600at 1227.763 kb on + strand, within ABZR87_RS21600at 1227.990 kb on + strand, within ABZR87_RS21605at 1227.991 kb on - strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.237 kb on + strand, within ABZR87_RS21605at 1228.238 kb on - strand, within ABZR87_RS21605at 1228.238 kb on - strand, within ABZR87_RS21605at 1228.238 kb on - strand, within ABZR87_RS21605at 1228.646 kb on + strand, within ABZR87_RS21610at 1228.706 kb on - strand, within ABZR87_RS21610at 1228.706 kb on - strand, within ABZR87_RS21610at 1228.848 kb on + strand, within ABZR87_RS21610at 1228.849 kb on - strand, within ABZR87_RS21610

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,226,324 + ABZR87_RS21590 0.43 +0.9
1,226,324 + ABZR87_RS21590 0.43 -0.1
1,226,325 - ABZR87_RS21590 0.43 +0.8
1,226,325 - ABZR87_RS21590 0.43 +0.2
1,226,474 + ABZR87_RS21590 0.67 +0.5
1,226,509 - ABZR87_RS21590 0.72 +0.0
1,226,547 - ABZR87_RS21590 0.78 -1.2
1,226,547 - ABZR87_RS21590 0.78 -0.9
1,226,547 - ABZR87_RS21590 0.78 -0.8
1,226,734 + -1.2
1,226,758 - +0.4
1,226,769 + -1.2
1,226,769 + -1.0
1,226,770 - -0.5
1,226,770 - -0.6
1,226,770 - +0.5
1,226,770 - -0.8
1,226,799 + -1.0
1,227,002 + ABZR87_RS21595 0.54 +4.8
1,227,220 + -0.5
1,227,257 + -0.5
1,227,259 + +1.0
1,227,497 + ABZR87_RS21600 0.32 +0.7
1,227,497 + ABZR87_RS21600 0.32 -0.9
1,227,498 - ABZR87_RS21600 0.33 +0.2
1,227,498 - ABZR87_RS21600 0.33 +1.0
1,227,653 + ABZR87_RS21600 0.58 +0.2
1,227,654 - ABZR87_RS21600 0.58 +0.2
1,227,654 - ABZR87_RS21600 0.58 -1.0
1,227,654 - ABZR87_RS21600 0.58 +2.0
1,227,763 + ABZR87_RS21600 0.76 +1.1
1,227,990 + ABZR87_RS21605 0.13 -0.4
1,227,991 - ABZR87_RS21605 0.13 +0.0
1,228,237 + ABZR87_RS21605 0.54 +0.4
1,228,237 + ABZR87_RS21605 0.54 -2.7
1,228,237 + ABZR87_RS21605 0.54 -1.9
1,228,237 + ABZR87_RS21605 0.54 +2.7
1,228,237 + ABZR87_RS21605 0.54 +1.7
1,228,237 + ABZR87_RS21605 0.54 -1.2
1,228,237 + ABZR87_RS21605 0.54 -0.3
1,228,238 - ABZR87_RS21605 0.54 -1.4
1,228,238 - ABZR87_RS21605 0.54 -0.2
1,228,238 - ABZR87_RS21605 0.54 +0.6
1,228,646 + ABZR87_RS21610 0.11 +0.5
1,228,706 - ABZR87_RS21610 0.15 -0.3
1,228,706 - ABZR87_RS21610 0.15 +1.4
1,228,848 + ABZR87_RS21610 0.25 +1.8
1,228,849 - ABZR87_RS21610 0.25 +0.9

Or see this region's nucleotide sequence