Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS20615 and ABZR87_RS20620 are separated by 0 nucleotides ABZR87_RS20620 and ABZR87_RS20625 are separated by 374 nucleotides ABZR87_RS20625 and ABZR87_RS20630 are separated by 71 nucleotides
ABZR87_RS20615: ABZR87_RS20615 - cupin domain-containing protein, at 1,013,998 to 1,014,516
_RS20615
ABZR87_RS20620: ABZR87_RS20620 - hypothetical protein, at 1,014,517 to 1,014,639
_RS20620
ABZR87_RS20625: ABZR87_RS20625 - MFS transporter, at 1,015,014 to 1,016,417
_RS20625
ABZR87_RS20630: ABZR87_RS20630 - porin, at 1,016,489 to 1,017,589
_RS20630
Position (kb) 1015
1016
1017 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 1014.070 kb on + strand, within ABZR87_RS20615 at 1014.082 kb on + strand, within ABZR87_RS20615 at 1014.082 kb on + strand, within ABZR87_RS20615 at 1014.082 kb on + strand, within ABZR87_RS20615 at 1014.148 kb on + strand, within ABZR87_RS20615 at 1014.148 kb on + strand, within ABZR87_RS20615 at 1014.148 kb on + strand, within ABZR87_RS20615 at 1014.149 kb on - strand, within ABZR87_RS20615 at 1014.149 kb on - strand, within ABZR87_RS20615 at 1014.149 kb on - strand, within ABZR87_RS20615 at 1014.149 kb on - strand, within ABZR87_RS20615 at 1014.149 kb on - strand, within ABZR87_RS20615 at 1014.151 kb on + strand, within ABZR87_RS20615 at 1014.151 kb on + strand, within ABZR87_RS20615 at 1014.151 kb on + strand, within ABZR87_RS20615 at 1014.152 kb on - strand, within ABZR87_RS20615 at 1014.172 kb on + strand, within ABZR87_RS20615 at 1014.172 kb on + strand, within ABZR87_RS20615 at 1014.173 kb on - strand, within ABZR87_RS20615 at 1014.173 kb on - strand, within ABZR87_RS20615 at 1014.173 kb on - strand, within ABZR87_RS20615 at 1014.173 kb on - strand, within ABZR87_RS20615 at 1014.376 kb on + strand, within ABZR87_RS20615 at 1014.376 kb on + strand, within ABZR87_RS20615 at 1014.377 kb on - strand, within ABZR87_RS20615 at 1014.460 kb on + strand, within ABZR87_RS20615 at 1014.460 kb on + strand, within ABZR87_RS20615 at 1014.460 kb on + strand, within ABZR87_RS20615 at 1014.460 kb on + strand, within ABZR87_RS20615 at 1014.461 kb on - strand, within ABZR87_RS20615 at 1014.467 kb on + strand at 1014.467 kb on + strand at 1014.468 kb on - strand at 1014.468 kb on - strand at 1014.468 kb on - strand at 1014.539 kb on + strand, within ABZR87_RS20620 at 1014.540 kb on - strand, within ABZR87_RS20620 at 1014.584 kb on + strand, within ABZR87_RS20620 at 1014.584 kb on + strand, within ABZR87_RS20620 at 1014.585 kb on - strand, within ABZR87_RS20620 at 1014.585 kb on - strand, within ABZR87_RS20620 at 1014.593 kb on + strand, within ABZR87_RS20620 at 1014.593 kb on + strand, within ABZR87_RS20620 at 1014.593 kb on + strand, within ABZR87_RS20620 at 1014.593 kb on + strand, within ABZR87_RS20620 at 1014.594 kb on - strand, within ABZR87_RS20620 at 1014.594 kb on - strand, within ABZR87_RS20620 at 1014.594 kb on - strand, within ABZR87_RS20620 at 1014.639 kb on + strand at 1014.639 kb on + strand at 1014.639 kb on + strand at 1014.639 kb on + strand at 1014.639 kb on + strand at 1014.639 kb on + strand at 1014.640 kb on - strand at 1014.640 kb on - strand at 1014.640 kb on - strand at 1014.640 kb on - strand at 1014.693 kb on + strand at 1014.693 kb on + strand at 1014.694 kb on - strand at 1014.862 kb on + strand at 1014.862 kb on + strand at 1014.900 kb on + strand at 1014.900 kb on + strand at 1014.900 kb on + strand at 1014.900 kb on + strand at 1014.900 kb on + strand at 1014.901 kb on - strand at 1014.901 kb on - strand at 1014.901 kb on - strand at 1014.901 kb on - strand at 1014.935 kb on - strand at 1014.935 kb on - strand at 1015.016 kb on - strand at 1015.066 kb on + strand at 1015.066 kb on + strand at 1015.066 kb on + strand at 1015.066 kb on + strand at 1015.232 kb on - strand, within ABZR87_RS20625 at 1015.246 kb on + strand, within ABZR87_RS20625 at 1015.246 kb on + strand, within ABZR87_RS20625 at 1015.247 kb on - strand, within ABZR87_RS20625 at 1015.247 kb on - strand, within ABZR87_RS20625 at 1015.252 kb on + strand, within ABZR87_RS20625 at 1015.252 kb on + strand, within ABZR87_RS20625 at 1015.253 kb on - strand, within ABZR87_RS20625 at 1015.253 kb on - strand, within ABZR87_RS20625 at 1015.253 kb on - strand, within ABZR87_RS20625 at 1015.262 kb on + strand, within ABZR87_RS20625 at 1015.262 kb on + strand, within ABZR87_RS20625 at 1015.262 kb on + strand, within ABZR87_RS20625 at 1015.263 kb on - strand, within ABZR87_RS20625 at 1015.315 kb on + strand, within ABZR87_RS20625 at 1015.316 kb on - strand, within ABZR87_RS20625 at 1015.316 kb on - strand, within ABZR87_RS20625 at 1015.498 kb on + strand, within ABZR87_RS20625 at 1015.498 kb on + strand, within ABZR87_RS20625 at 1015.498 kb on + strand, within ABZR87_RS20625 at 1015.498 kb on + strand, within ABZR87_RS20625 at 1015.499 kb on - strand, within ABZR87_RS20625 at 1015.499 kb on - strand, within ABZR87_RS20625 at 1015.540 kb on + strand, within ABZR87_RS20625 at 1015.540 kb on + strand, within ABZR87_RS20625 at 1015.576 kb on - strand, within ABZR87_RS20625 at 1015.576 kb on - strand, within ABZR87_RS20625 at 1015.597 kb on + strand, within ABZR87_RS20625 at 1015.597 kb on + strand, within ABZR87_RS20625 at 1015.597 kb on + strand, within ABZR87_RS20625 at 1015.668 kb on - strand, within ABZR87_RS20625 at 1015.684 kb on - strand, within ABZR87_RS20625 at 1015.793 kb on + strand, within ABZR87_RS20625 at 1015.794 kb on - strand, within ABZR87_RS20625 at 1015.794 kb on - strand, within ABZR87_RS20625 at 1015.794 kb on - strand, within ABZR87_RS20625 at 1015.829 kb on - strand, within ABZR87_RS20625 at 1015.829 kb on - strand, within ABZR87_RS20625 at 1015.912 kb on + strand, within ABZR87_RS20625 at 1015.913 kb on - strand, within ABZR87_RS20625 at 1015.963 kb on + strand, within ABZR87_RS20625 at 1015.963 kb on + strand, within ABZR87_RS20625 at 1016.012 kb on + strand, within ABZR87_RS20625 at 1016.012 kb on + strand, within ABZR87_RS20625 at 1016.087 kb on + strand, within ABZR87_RS20625 at 1016.088 kb on - strand, within ABZR87_RS20625 at 1016.088 kb on - strand, within ABZR87_RS20625 at 1016.090 kb on - strand, within ABZR87_RS20625 at 1016.595 kb on + strand at 1016.595 kb on + strand at 1016.596 kb on - strand at 1016.596 kb on - strand at 1016.596 kb on - strand at 1016.596 kb on - strand at 1016.599 kb on + strand, within ABZR87_RS20630 at 1016.600 kb on - strand, within ABZR87_RS20630 at 1016.600 kb on - strand, within ABZR87_RS20630 at 1016.600 kb on - strand, within ABZR87_RS20630 at 1016.600 kb on - strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.606 kb on + strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.607 kb on - strand, within ABZR87_RS20630 at 1016.610 kb on + strand, within ABZR87_RS20630 at 1016.610 kb on + strand, within ABZR87_RS20630 at 1016.610 kb on + strand, within ABZR87_RS20630 at 1016.637 kb on + strand, within ABZR87_RS20630 at 1016.637 kb on + strand, within ABZR87_RS20630 at 1016.638 kb on - strand, within ABZR87_RS20630 at 1016.638 kb on - strand, within ABZR87_RS20630 at 1016.638 kb on - strand, within ABZR87_RS20630 at 1016.638 kb on - strand, within ABZR87_RS20630 at 1016.692 kb on + strand, within ABZR87_RS20630 at 1016.692 kb on + strand, within ABZR87_RS20630 at 1016.692 kb on + strand, within ABZR87_RS20630 at 1016.693 kb on - strand, within ABZR87_RS20630 at 1016.693 kb on - strand, within ABZR87_RS20630 at 1016.693 kb on - strand, within ABZR87_RS20630 at 1016.797 kb on + strand, within ABZR87_RS20630 at 1016.797 kb on + strand, within ABZR87_RS20630 at 1016.839 kb on - strand, within ABZR87_RS20630 at 1016.924 kb on - strand, within ABZR87_RS20630 at 1016.970 kb on + strand, within ABZR87_RS20630 at 1016.971 kb on - strand, within ABZR87_RS20630 at 1017.004 kb on - strand, within ABZR87_RS20630 at 1017.004 kb on - strand, within ABZR87_RS20630 at 1017.066 kb on + strand, within ABZR87_RS20630 at 1017.066 kb on + strand, within ABZR87_RS20630 at 1017.067 kb on - strand, within ABZR87_RS20630 at 1017.067 kb on - strand, within ABZR87_RS20630 at 1017.067 kb on - strand, within ABZR87_RS20630 at 1017.067 kb on - strand, within ABZR87_RS20630 at 1017.108 kb on + strand, within ABZR87_RS20630 at 1017.108 kb on + strand, within ABZR87_RS20630 at 1017.109 kb on - strand, within ABZR87_RS20630 at 1017.174 kb on + strand, within ABZR87_RS20630 at 1017.174 kb on + strand, within ABZR87_RS20630 at 1017.174 kb on + strand, within ABZR87_RS20630 at 1017.175 kb on - strand, within ABZR87_RS20630
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,014,070 + ABZR87_RS20615 0.14 +0.5 1,014,082 + ABZR87_RS20615 0.16 -0.8 1,014,082 + ABZR87_RS20615 0.16 -0.7 1,014,082 + ABZR87_RS20615 0.16 -0.6 1,014,148 + ABZR87_RS20615 0.29 +0.3 1,014,148 + ABZR87_RS20615 0.29 -0.2 1,014,148 + ABZR87_RS20615 0.29 +0.9 1,014,149 - ABZR87_RS20615 0.29 -0.8 1,014,149 - ABZR87_RS20615 0.29 -0.3 1,014,149 - ABZR87_RS20615 0.29 -0.9 1,014,149 - ABZR87_RS20615 0.29 +0.4 1,014,149 - ABZR87_RS20615 0.29 -0.2 1,014,151 + ABZR87_RS20615 0.29 -1.0 1,014,151 + ABZR87_RS20615 0.29 +0.8 1,014,151 + ABZR87_RS20615 0.29 -0.4 1,014,152 - ABZR87_RS20615 0.30 +0.4 1,014,172 + ABZR87_RS20615 0.34 +0.4 1,014,172 + ABZR87_RS20615 0.34 -1.7 1,014,173 - ABZR87_RS20615 0.34 -0.9 1,014,173 - ABZR87_RS20615 0.34 -0.1 1,014,173 - ABZR87_RS20615 0.34 -0.6 1,014,173 - ABZR87_RS20615 0.34 -0.4 1,014,376 + ABZR87_RS20615 0.73 -1.1 1,014,376 + ABZR87_RS20615 0.73 -0.2 1,014,377 - ABZR87_RS20615 0.73 -0.5 1,014,460 + ABZR87_RS20615 0.89 +0.2 1,014,460 + ABZR87_RS20615 0.89 -0.2 1,014,460 + ABZR87_RS20615 0.89 +3.6 1,014,460 + ABZR87_RS20615 0.89 +1.4 1,014,461 - ABZR87_RS20615 0.89 -0.7 1,014,467 + -0.3 1,014,467 + -1.1 1,014,468 - -0.4 1,014,468 - +1.9 1,014,468 - -0.0 1,014,539 + ABZR87_RS20620 0.18 -1.0 1,014,540 - ABZR87_RS20620 0.19 +0.0 1,014,584 + ABZR87_RS20620 0.54 +0.3 1,014,584 + ABZR87_RS20620 0.54 +0.2 1,014,585 - ABZR87_RS20620 0.55 +2.6 1,014,585 - ABZR87_RS20620 0.55 -0.0 1,014,593 + ABZR87_RS20620 0.62 +0.3 1,014,593 + ABZR87_RS20620 0.62 +1.6 1,014,593 + ABZR87_RS20620 0.62 +0.1 1,014,593 + ABZR87_RS20620 0.62 -1.1 1,014,594 - ABZR87_RS20620 0.63 +2.6 1,014,594 - ABZR87_RS20620 0.63 +0.6 1,014,594 - ABZR87_RS20620 0.63 -0.0 1,014,639 + -0.2 1,014,639 + -0.8 1,014,639 + -1.0 1,014,639 + -0.4 1,014,639 + +1.3 1,014,639 + +0.2 1,014,640 - -0.5 1,014,640 - -0.6 1,014,640 - +0.2 1,014,640 - +0.0 1,014,693 + +0.8 1,014,693 + +0.3 1,014,694 - +1.2 1,014,862 + +0.7 1,014,862 + -0.2 1,014,900 + +0.5 1,014,900 + +1.5 1,014,900 + +1.2 1,014,900 + -0.7 1,014,900 + -0.7 1,014,901 - +3.7 1,014,901 - -0.3 1,014,901 - +0.7 1,014,901 - +0.4 1,014,935 - -0.1 1,014,935 - +0.1 1,015,016 - +1.8 1,015,066 + -0.1 1,015,066 + +0.6 1,015,066 + -0.3 1,015,066 + -0.6 1,015,232 - ABZR87_RS20625 0.16 +0.3 1,015,246 + ABZR87_RS20625 0.17 +1.2 1,015,246 + ABZR87_RS20625 0.17 -1.6 1,015,247 - ABZR87_RS20625 0.17 -0.4 1,015,247 - ABZR87_RS20625 0.17 +0.8 1,015,252 + ABZR87_RS20625 0.17 -0.8 1,015,252 + ABZR87_RS20625 0.17 +0.2 1,015,253 - ABZR87_RS20625 0.17 +0.2 1,015,253 - ABZR87_RS20625 0.17 -2.7 1,015,253 - ABZR87_RS20625 0.17 +2.2 1,015,262 + ABZR87_RS20625 0.18 +0.0 1,015,262 + ABZR87_RS20625 0.18 +0.6 1,015,262 + ABZR87_RS20625 0.18 -0.2 1,015,263 - ABZR87_RS20625 0.18 +0.3 1,015,315 + ABZR87_RS20625 0.21 -0.1 1,015,316 - ABZR87_RS20625 0.22 -1.0 1,015,316 - ABZR87_RS20625 0.22 -0.3 1,015,498 + ABZR87_RS20625 0.34 -0.1 1,015,498 + ABZR87_RS20625 0.34 +0.3 1,015,498 + ABZR87_RS20625 0.34 +0.3 1,015,498 + ABZR87_RS20625 0.34 -0.7 1,015,499 - ABZR87_RS20625 0.35 -0.1 1,015,499 - ABZR87_RS20625 0.35 -0.2 1,015,540 + ABZR87_RS20625 0.37 +0.1 1,015,540 + ABZR87_RS20625 0.37 +0.2 1,015,576 - ABZR87_RS20625 0.40 +0.7 1,015,576 - ABZR87_RS20625 0.40 +0.8 1,015,597 + ABZR87_RS20625 0.42 +0.3 1,015,597 + ABZR87_RS20625 0.42 +0.7 1,015,597 + ABZR87_RS20625 0.42 +0.6 1,015,668 - ABZR87_RS20625 0.47 -0.5 1,015,684 - ABZR87_RS20625 0.48 -0.6 1,015,793 + ABZR87_RS20625 0.55 +2.4 1,015,794 - ABZR87_RS20625 0.56 -0.3 1,015,794 - ABZR87_RS20625 0.56 +0.6 1,015,794 - ABZR87_RS20625 0.56 -0.6 1,015,829 - ABZR87_RS20625 0.58 +0.8 1,015,829 - ABZR87_RS20625 0.58 -1.4 1,015,912 + ABZR87_RS20625 0.64 +0.3 1,015,913 - ABZR87_RS20625 0.64 -0.7 1,015,963 + ABZR87_RS20625 0.68 +0.2 1,015,963 + ABZR87_RS20625 0.68 +2.2 1,016,012 + ABZR87_RS20625 0.71 +0.5 1,016,012 + ABZR87_RS20625 0.71 -0.0 1,016,087 + ABZR87_RS20625 0.76 -1.6 1,016,088 - ABZR87_RS20625 0.76 -1.3 1,016,088 - ABZR87_RS20625 0.76 -0.1 1,016,090 - ABZR87_RS20625 0.77 +0.6 1,016,595 + +1.1 1,016,595 + -1.3 1,016,596 - +1.5 1,016,596 - -0.7 1,016,596 - -0.7 1,016,596 - +0.4 1,016,599 + ABZR87_RS20630 0.10 +0.2 1,016,600 - ABZR87_RS20630 0.10 -0.2 1,016,600 - ABZR87_RS20630 0.10 +0.8 1,016,600 - ABZR87_RS20630 0.10 +1.2 1,016,600 - ABZR87_RS20630 0.10 +0.2 1,016,606 + ABZR87_RS20630 0.11 -0.8 1,016,606 + ABZR87_RS20630 0.11 -1.4 1,016,606 + ABZR87_RS20630 0.11 +0.0 1,016,606 + ABZR87_RS20630 0.11 +0.2 1,016,606 + ABZR87_RS20630 0.11 -0.4 1,016,607 - ABZR87_RS20630 0.11 +0.1 1,016,607 - ABZR87_RS20630 0.11 +0.1 1,016,607 - ABZR87_RS20630 0.11 +0.7 1,016,607 - ABZR87_RS20630 0.11 +0.7 1,016,607 - ABZR87_RS20630 0.11 -1.2 1,016,610 + ABZR87_RS20630 0.11 +0.1 1,016,610 + ABZR87_RS20630 0.11 +0.3 1,016,610 + ABZR87_RS20630 0.11 -0.1 1,016,637 + ABZR87_RS20630 0.13 -0.1 1,016,637 + ABZR87_RS20630 0.13 -0.4 1,016,638 - ABZR87_RS20630 0.14 +0.6 1,016,638 - ABZR87_RS20630 0.14 -2.0 1,016,638 - ABZR87_RS20630 0.14 -0.3 1,016,638 - ABZR87_RS20630 0.14 +1.0 1,016,692 + ABZR87_RS20630 0.18 +2.6 1,016,692 + ABZR87_RS20630 0.18 +0.4 1,016,692 + ABZR87_RS20630 0.18 -0.9 1,016,693 - ABZR87_RS20630 0.19 +0.3 1,016,693 - ABZR87_RS20630 0.19 -0.2 1,016,693 - ABZR87_RS20630 0.19 -0.2 1,016,797 + ABZR87_RS20630 0.28 -2.0 1,016,797 + ABZR87_RS20630 0.28 +1.0 1,016,839 - ABZR87_RS20630 0.32 +0.3 1,016,924 - ABZR87_RS20630 0.40 -0.6 1,016,970 + ABZR87_RS20630 0.44 -0.8 1,016,971 - ABZR87_RS20630 0.44 +1.8 1,017,004 - ABZR87_RS20630 0.47 +0.1 1,017,004 - ABZR87_RS20630 0.47 -0.2 1,017,066 + ABZR87_RS20630 0.52 +1.3 1,017,066 + ABZR87_RS20630 0.52 +0.2 1,017,067 - ABZR87_RS20630 0.52 -0.9 1,017,067 - ABZR87_RS20630 0.52 -0.0 1,017,067 - ABZR87_RS20630 0.52 -0.0 1,017,067 - ABZR87_RS20630 0.52 +0.2 1,017,108 + ABZR87_RS20630 0.56 +0.9 1,017,108 + ABZR87_RS20630 0.56 +1.2 1,017,109 - ABZR87_RS20630 0.56 -0.4 1,017,174 + ABZR87_RS20630 0.62 -0.6 1,017,174 + ABZR87_RS20630 0.62 -0.3 1,017,174 + ABZR87_RS20630 0.62 +2.0 1,017,175 - ABZR87_RS20630 0.62 -0.4
Or see this region's nucleotide sequence