Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS20205

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS20200 and ABZR87_RS20205 overlap by 4 nucleotidesABZR87_RS20205 and ABZR87_RS20210 are separated by 21 nucleotides ABZR87_RS20200: ABZR87_RS20200 - DUF4123 domain-containing protein, at 916,019 to 917,155 _RS20200 ABZR87_RS20205: ABZR87_RS20205 - type VI secretion system Vgr family protein, at 917,152 to 919,911 _RS20205 ABZR87_RS20210: ABZR87_RS20210 - type VI secretion system ATPase TssH, at 919,933 to 922,656 _RS20210 Position (kb) 917 918 919 920Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 916.244 kb on + strand, within ABZR87_RS20200at 916.244 kb on + strand, within ABZR87_RS20200at 916.245 kb on - strand, within ABZR87_RS20200at 916.245 kb on - strand, within ABZR87_RS20200at 916.317 kb on - strand, within ABZR87_RS20200at 916.379 kb on - strand, within ABZR87_RS20200at 916.402 kb on + strand, within ABZR87_RS20200at 916.456 kb on + strand, within ABZR87_RS20200at 916.456 kb on + strand, within ABZR87_RS20200at 916.457 kb on - strand, within ABZR87_RS20200at 916.628 kb on + strand, within ABZR87_RS20200at 916.629 kb on - strand, within ABZR87_RS20200at 916.632 kb on + strand, within ABZR87_RS20200at 916.632 kb on + strand, within ABZR87_RS20200at 916.632 kb on + strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.633 kb on - strand, within ABZR87_RS20200at 916.687 kb on + strand, within ABZR87_RS20200at 916.687 kb on + strand, within ABZR87_RS20200at 916.707 kb on + strand, within ABZR87_RS20200at 916.707 kb on + strand, within ABZR87_RS20200at 916.708 kb on - strand, within ABZR87_RS20200at 916.742 kb on - strand, within ABZR87_RS20200at 916.806 kb on - strand, within ABZR87_RS20200at 916.869 kb on + strand, within ABZR87_RS20200at 916.869 kb on + strand, within ABZR87_RS20200at 916.903 kb on + strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.904 kb on - strand, within ABZR87_RS20200at 916.945 kb on + strand, within ABZR87_RS20200at 916.946 kb on - strand, within ABZR87_RS20200at 916.946 kb on - strand, within ABZR87_RS20200at 916.946 kb on - strand, within ABZR87_RS20200at 916.971 kb on + strand, within ABZR87_RS20200at 916.971 kb on + strand, within ABZR87_RS20200at 916.972 kb on - strand, within ABZR87_RS20200at 916.972 kb on - strand, within ABZR87_RS20200at 917.019 kb on + strand, within ABZR87_RS20200at 917.052 kb on + strandat 917.052 kb on + strandat 917.053 kb on - strandat 917.053 kb on - strandat 917.108 kb on + strandat 917.108 kb on + strandat 917.108 kb on + strandat 917.191 kb on - strandat 917.191 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.239 kb on - strandat 917.287 kb on - strandat 917.287 kb on - strandat 918.141 kb on - strand, within ABZR87_RS20205at 918.213 kb on - strand, within ABZR87_RS20205at 918.213 kb on - strand, within ABZR87_RS20205at 918.296 kb on + strand, within ABZR87_RS20205at 918.297 kb on - strand, within ABZR87_RS20205at 918.326 kb on + strand, within ABZR87_RS20205at 918.326 kb on + strand, within ABZR87_RS20205at 918.469 kb on + strand, within ABZR87_RS20205at 918.470 kb on - strand, within ABZR87_RS20205at 918.576 kb on + strand, within ABZR87_RS20205at 918.577 kb on - strand, within ABZR87_RS20205at 918.719 kb on + strand, within ABZR87_RS20205at 918.719 kb on + strand, within ABZR87_RS20205at 918.790 kb on + strand, within ABZR87_RS20205at 918.790 kb on + strand, within ABZR87_RS20205at 918.790 kb on + strand, within ABZR87_RS20205at 918.805 kb on + strand, within ABZR87_RS20205at 918.805 kb on + strand, within ABZR87_RS20205at 918.806 kb on - strand, within ABZR87_RS20205at 918.806 kb on - strand, within ABZR87_RS20205at 918.806 kb on - strand, within ABZR87_RS20205at 919.034 kb on + strand, within ABZR87_RS20205at 919.035 kb on - strand, within ABZR87_RS20205at 919.035 kb on - strand, within ABZR87_RS20205at 919.134 kb on - strand, within ABZR87_RS20205at 919.154 kb on - strand, within ABZR87_RS20205at 919.297 kb on + strand, within ABZR87_RS20205at 919.340 kb on + strand, within ABZR87_RS20205at 919.341 kb on - strand, within ABZR87_RS20205at 919.341 kb on - strand, within ABZR87_RS20205at 919.398 kb on - strand, within ABZR87_RS20205at 919.424 kb on + strand, within ABZR87_RS20205at 919.425 kb on - strand, within ABZR87_RS20205at 919.696 kb on + strandat 919.753 kb on - strandat 919.753 kb on - strandat 919.879 kb on + strandat 919.879 kb on + strandat 919.879 kb on + strandat 919.879 kb on + strandat 919.880 kb on - strandat 919.880 kb on - strandat 919.880 kb on - strandat 919.934 kb on + strandat 919.934 kb on + strandat 919.935 kb on - strandat 919.935 kb on - strandat 919.935 kb on - strandat 919.946 kb on + strandat 920.178 kb on + strandat 920.234 kb on + strand, within ABZR87_RS20210at 920.234 kb on + strand, within ABZR87_RS20210at 920.234 kb on + strand, within ABZR87_RS20210at 920.234 kb on + strand, within ABZR87_RS20210at 920.235 kb on - strand, within ABZR87_RS20210at 920.282 kb on + strand, within ABZR87_RS20210at 920.282 kb on + strand, within ABZR87_RS20210at 920.282 kb on + strand, within ABZR87_RS20210at 920.283 kb on - strand, within ABZR87_RS20210at 920.283 kb on - strand, within ABZR87_RS20210at 920.570 kb on + strand, within ABZR87_RS20210at 920.579 kb on + strand, within ABZR87_RS20210at 920.579 kb on + strand, within ABZR87_RS20210at 920.580 kb on - strand, within ABZR87_RS20210at 920.628 kb on - strand, within ABZR87_RS20210at 920.628 kb on - strand, within ABZR87_RS20210at 920.654 kb on + strand, within ABZR87_RS20210at 920.706 kb on + strand, within ABZR87_RS20210

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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916,244 + ABZR87_RS20200 0.20 +1.7
916,244 + ABZR87_RS20200 0.20 -0.1
916,245 - ABZR87_RS20200 0.20 -0.9
916,245 - ABZR87_RS20200 0.20 +1.9
916,317 - ABZR87_RS20200 0.26 -0.8
916,379 - ABZR87_RS20200 0.32 -0.0
916,402 + ABZR87_RS20200 0.34 -1.4
916,456 + ABZR87_RS20200 0.38 +1.0
916,456 + ABZR87_RS20200 0.38 -0.3
916,457 - ABZR87_RS20200 0.39 -0.2
916,628 + ABZR87_RS20200 0.54 -2.2
916,629 - ABZR87_RS20200 0.54 -0.9
916,632 + ABZR87_RS20200 0.54 +0.6
916,632 + ABZR87_RS20200 0.54 +0.2
916,632 + ABZR87_RS20200 0.54 +0.2
916,633 - ABZR87_RS20200 0.54 -0.4
916,633 - ABZR87_RS20200 0.54 -1.4
916,633 - ABZR87_RS20200 0.54 -0.0
916,633 - ABZR87_RS20200 0.54 -1.0
916,633 - ABZR87_RS20200 0.54 -0.5
916,633 - ABZR87_RS20200 0.54 -1.3
916,633 - ABZR87_RS20200 0.54 -0.5
916,633 - ABZR87_RS20200 0.54 -0.5
916,687 + ABZR87_RS20200 0.59 -0.1
916,687 + ABZR87_RS20200 0.59 +1.2
916,707 + ABZR87_RS20200 0.61 -1.7
916,707 + ABZR87_RS20200 0.61 +1.1
916,708 - ABZR87_RS20200 0.61 -0.0
916,742 - ABZR87_RS20200 0.64 +0.1
916,806 - ABZR87_RS20200 0.69 +0.0
916,869 + ABZR87_RS20200 0.75 -1.2
916,869 + ABZR87_RS20200 0.75 -0.1
916,903 + ABZR87_RS20200 0.78 -0.3
916,904 - ABZR87_RS20200 0.78 -0.6
916,904 - ABZR87_RS20200 0.78 -0.4
916,904 - ABZR87_RS20200 0.78 +0.3
916,904 - ABZR87_RS20200 0.78 -0.8
916,904 - ABZR87_RS20200 0.78 -1.9
916,945 + ABZR87_RS20200 0.81 -0.3
916,946 - ABZR87_RS20200 0.82 +1.3
916,946 - ABZR87_RS20200 0.82 -0.4
916,946 - ABZR87_RS20200 0.82 -0.3
916,971 + ABZR87_RS20200 0.84 +0.8
916,971 + ABZR87_RS20200 0.84 +0.1
916,972 - ABZR87_RS20200 0.84 -0.6
916,972 - ABZR87_RS20200 0.84 +0.1
917,019 + ABZR87_RS20200 0.88 -1.0
917,052 + +0.6
917,052 + +1.0
917,053 - +0.3
917,053 - +0.9
917,108 + +0.2
917,108 + -0.3
917,108 + -0.5
917,191 - -0.2
917,191 - -0.1
917,239 - +1.0
917,239 - +1.0
917,239 - +0.0
917,239 - +0.2
917,239 - -1.5
917,287 - +1.6
917,287 - +1.5
918,141 - ABZR87_RS20205 0.36 -1.6
918,213 - ABZR87_RS20205 0.38 +0.2
918,213 - ABZR87_RS20205 0.38 +1.0
918,296 + ABZR87_RS20205 0.41 +4.5
918,297 - ABZR87_RS20205 0.41 -1.1
918,326 + ABZR87_RS20205 0.43 -1.0
918,326 + ABZR87_RS20205 0.43 +0.1
918,469 + ABZR87_RS20205 0.48 +0.2
918,470 - ABZR87_RS20205 0.48 -1.0
918,576 + ABZR87_RS20205 0.52 -0.1
918,577 - ABZR87_RS20205 0.52 +1.0
918,719 + ABZR87_RS20205 0.57 +1.4
918,719 + ABZR87_RS20205 0.57 -0.3
918,790 + ABZR87_RS20205 0.59 -0.0
918,790 + ABZR87_RS20205 0.59 +0.3
918,790 + ABZR87_RS20205 0.59 +1.9
918,805 + ABZR87_RS20205 0.60 -0.0
918,805 + ABZR87_RS20205 0.60 +1.0
918,806 - ABZR87_RS20205 0.60 -2.1
918,806 - ABZR87_RS20205 0.60 +0.7
918,806 - ABZR87_RS20205 0.60 -2.2
919,034 + ABZR87_RS20205 0.68 +2.8
919,035 - ABZR87_RS20205 0.68 +0.3
919,035 - ABZR87_RS20205 0.68 +1.6
919,134 - ABZR87_RS20205 0.72 +0.1
919,154 - ABZR87_RS20205 0.73 -1.0
919,297 + ABZR87_RS20205 0.78 +0.1
919,340 + ABZR87_RS20205 0.79 -0.3
919,341 - ABZR87_RS20205 0.79 -1.2
919,341 - ABZR87_RS20205 0.79 +1.3
919,398 - ABZR87_RS20205 0.81 +0.1
919,424 + ABZR87_RS20205 0.82 +0.3
919,425 - ABZR87_RS20205 0.82 -1.9
919,696 + +0.1
919,753 - +0.5
919,753 - +1.6
919,879 + +1.5
919,879 + +0.6
919,879 + +0.2
919,879 + +0.6
919,880 - +0.8
919,880 - -0.6
919,880 - -0.3
919,934 + -0.8
919,934 + +0.4
919,935 - +0.7
919,935 - -1.3
919,935 - -1.2
919,946 + -0.5
920,178 + -0.9
920,234 + ABZR87_RS20210 0.11 +1.1
920,234 + ABZR87_RS20210 0.11 +0.0
920,234 + ABZR87_RS20210 0.11 +0.8
920,234 + ABZR87_RS20210 0.11 -0.1
920,235 - ABZR87_RS20210 0.11 -0.4
920,282 + ABZR87_RS20210 0.13 -1.1
920,282 + ABZR87_RS20210 0.13 -0.2
920,282 + ABZR87_RS20210 0.13 +0.1
920,283 - ABZR87_RS20210 0.13 -0.4
920,283 - ABZR87_RS20210 0.13 -1.3
920,570 + ABZR87_RS20210 0.23 +0.4
920,579 + ABZR87_RS20210 0.24 +0.6
920,579 + ABZR87_RS20210 0.24 -0.7
920,580 - ABZR87_RS20210 0.24 -0.4
920,628 - ABZR87_RS20210 0.26 +0.2
920,628 - ABZR87_RS20210 0.26 -0.1
920,654 + ABZR87_RS20210 0.26 +1.2
920,706 + ABZR87_RS20210 0.28 -0.3

Or see this region's nucleotide sequence