Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS17575 and ABZR87_RS17580 are separated by 21 nucleotides ABZR87_RS17580 and ABZR87_RS17585 are separated by 259 nucleotides
ABZR87_RS17575: ABZR87_RS17575 - aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme, at 304,118 to 305,422
_RS17575
ABZR87_RS17580: ABZR87_RS17580 - amino acid permease, at 305,444 to 306,820
_RS17580
ABZR87_RS17585: ABZR87_RS17585 - alpha/beta hydrolase domain-containing protein, at 307,080 to 309,158
_RS17585
Position (kb) 305
306
307 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7 at 304.469 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.481 kb on + strand, within ABZR87_RS17575 at 304.482 kb on - strand, within ABZR87_RS17575 at 304.706 kb on + strand, within ABZR87_RS17575 at 304.706 kb on + strand, within ABZR87_RS17575 at 304.707 kb on - strand, within ABZR87_RS17575 at 304.763 kb on + strand, within ABZR87_RS17575 at 304.763 kb on + strand, within ABZR87_RS17575 at 304.764 kb on - strand, within ABZR87_RS17575 at 304.764 kb on - strand, within ABZR87_RS17575 at 304.764 kb on - strand, within ABZR87_RS17575 at 304.874 kb on + strand, within ABZR87_RS17575 at 304.874 kb on + strand, within ABZR87_RS17575 at 304.875 kb on - strand, within ABZR87_RS17575 at 304.875 kb on - strand, within ABZR87_RS17575 at 304.875 kb on - strand, within ABZR87_RS17575 at 304.889 kb on + strand, within ABZR87_RS17575 at 304.890 kb on - strand, within ABZR87_RS17575 at 304.916 kb on + strand, within ABZR87_RS17575 at 304.916 kb on + strand, within ABZR87_RS17575 at 304.916 kb on + strand, within ABZR87_RS17575 at 305.141 kb on + strand, within ABZR87_RS17575 at 305.141 kb on + strand, within ABZR87_RS17575 at 305.141 kb on + strand, within ABZR87_RS17575 at 305.141 kb on + strand, within ABZR87_RS17575 at 305.141 kb on + strand, within ABZR87_RS17575 at 305.141 kb on + strand, within ABZR87_RS17575 at 305.141 kb on + strand, within ABZR87_RS17575 at 305.141 kb on + strand, within ABZR87_RS17575 at 305.141 kb on + strand, within ABZR87_RS17575 at 305.142 kb on - strand, within ABZR87_RS17575 at 305.142 kb on - strand, within ABZR87_RS17575 at 305.142 kb on - strand, within ABZR87_RS17575 at 305.142 kb on - strand, within ABZR87_RS17575 at 305.374 kb on + strand at 305.487 kb on - strand at 305.487 kb on - strand at 305.882 kb on + strand, within ABZR87_RS17580 at 305.882 kb on + strand, within ABZR87_RS17580 at 305.882 kb on + strand, within ABZR87_RS17580 at 305.883 kb on - strand, within ABZR87_RS17580 at 305.886 kb on + strand, within ABZR87_RS17580 at 305.886 kb on + strand, within ABZR87_RS17580 at 305.886 kb on + strand, within ABZR87_RS17580 at 305.886 kb on + strand, within ABZR87_RS17580 at 305.886 kb on + strand, within ABZR87_RS17580 at 305.886 kb on + strand, within ABZR87_RS17580 at 305.887 kb on - strand, within ABZR87_RS17580 at 305.887 kb on - strand, within ABZR87_RS17580 at 305.887 kb on - strand, within ABZR87_RS17580 at 305.887 kb on - strand, within ABZR87_RS17580 at 305.887 kb on - strand, within ABZR87_RS17580 at 306.055 kb on - strand, within ABZR87_RS17580 at 306.055 kb on - strand, within ABZR87_RS17580 at 306.055 kb on - strand, within ABZR87_RS17580 at 306.234 kb on + strand, within ABZR87_RS17580 at 306.234 kb on + strand, within ABZR87_RS17580 at 306.273 kb on + strand, within ABZR87_RS17580 at 306.274 kb on - strand, within ABZR87_RS17580 at 306.282 kb on + strand, within ABZR87_RS17580 at 306.339 kb on + strand, within ABZR87_RS17580 at 306.340 kb on - strand, within ABZR87_RS17580 at 306.450 kb on + strand, within ABZR87_RS17580 at 306.450 kb on + strand, within ABZR87_RS17580 at 306.450 kb on + strand, within ABZR87_RS17580 at 306.451 kb on - strand, within ABZR87_RS17580 at 306.451 kb on - strand, within ABZR87_RS17580 at 306.451 kb on - strand, within ABZR87_RS17580 at 306.451 kb on - strand, within ABZR87_RS17580 at 306.510 kb on + strand, within ABZR87_RS17580 at 306.543 kb on + strand, within ABZR87_RS17580 at 306.543 kb on + strand, within ABZR87_RS17580 at 306.543 kb on + strand, within ABZR87_RS17580 at 306.543 kb on + strand, within ABZR87_RS17580 at 306.544 kb on - strand, within ABZR87_RS17580 at 306.544 kb on - strand, within ABZR87_RS17580 at 306.556 kb on - strand, within ABZR87_RS17580 at 306.645 kb on + strand, within ABZR87_RS17580 at 306.645 kb on + strand, within ABZR87_RS17580 at 306.645 kb on + strand, within ABZR87_RS17580 at 306.646 kb on - strand, within ABZR87_RS17580 at 306.942 kb on + strand at 306.942 kb on + strand at 306.943 kb on - strand at 306.943 kb on - strand at 306.943 kb on - strand at 306.943 kb on - strand at 306.943 kb on - strand at 306.986 kb on + strand at 306.987 kb on - strand at 307.033 kb on - strand at 307.033 kb on - strand at 307.197 kb on + strand at 307.197 kb on + strand at 307.198 kb on - strand at 307.198 kb on - strand at 307.239 kb on + strand at 307.240 kb on - strand at 307.240 kb on - strand at 307.257 kb on + strand at 307.281 kb on - strand at 307.368 kb on + strand, within ABZR87_RS17585 at 307.368 kb on + strand, within ABZR87_RS17585 at 307.368 kb on + strand, within ABZR87_RS17585 at 307.368 kb on + strand, within ABZR87_RS17585 at 307.368 kb on + strand, within ABZR87_RS17585 at 307.369 kb on - strand, within ABZR87_RS17585 at 307.369 kb on - strand, within ABZR87_RS17585 at 307.431 kb on + strand, within ABZR87_RS17585 at 307.598 kb on + strand, within ABZR87_RS17585 at 307.598 kb on + strand, within ABZR87_RS17585 at 307.599 kb on - strand, within ABZR87_RS17585 at 307.599 kb on - strand, within ABZR87_RS17585 at 307.723 kb on - strand, within ABZR87_RS17585
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 304,469 + ABZR87_RS17575 0.27 -2.2 304,481 + ABZR87_RS17575 0.28 +2.1 304,481 + ABZR87_RS17575 0.28 -0.3 304,481 + ABZR87_RS17575 0.28 +0.2 304,481 + ABZR87_RS17575 0.28 +0.2 304,481 + ABZR87_RS17575 0.28 -0.8 304,482 - ABZR87_RS17575 0.28 -0.5 304,706 + ABZR87_RS17575 0.45 +0.8 304,706 + ABZR87_RS17575 0.45 +0.9 304,707 - ABZR87_RS17575 0.45 -0.3 304,763 + ABZR87_RS17575 0.49 -1.2 304,763 + ABZR87_RS17575 0.49 +0.4 304,764 - ABZR87_RS17575 0.50 -0.2 304,764 - ABZR87_RS17575 0.50 -0.2 304,764 - ABZR87_RS17575 0.50 -1.2 304,874 + ABZR87_RS17575 0.58 +0.0 304,874 + ABZR87_RS17575 0.58 +1.9 304,875 - ABZR87_RS17575 0.58 +0.3 304,875 - ABZR87_RS17575 0.58 -0.3 304,875 - ABZR87_RS17575 0.58 +0.2 304,889 + ABZR87_RS17575 0.59 +1.7 304,890 - ABZR87_RS17575 0.59 -0.8 304,916 + ABZR87_RS17575 0.61 +0.6 304,916 + ABZR87_RS17575 0.61 -0.2 304,916 + ABZR87_RS17575 0.61 +0.5 305,141 + ABZR87_RS17575 0.78 -0.1 305,141 + ABZR87_RS17575 0.78 -0.0 305,141 + ABZR87_RS17575 0.78 +1.3 305,141 + ABZR87_RS17575 0.78 +1.0 305,141 + ABZR87_RS17575 0.78 +0.1 305,141 + ABZR87_RS17575 0.78 -0.2 305,141 + ABZR87_RS17575 0.78 -1.0 305,141 + ABZR87_RS17575 0.78 -0.4 305,141 + ABZR87_RS17575 0.78 +0.3 305,142 - ABZR87_RS17575 0.78 +0.2 305,142 - ABZR87_RS17575 0.78 +7.7 305,142 - ABZR87_RS17575 0.78 +2.3 305,142 - ABZR87_RS17575 0.78 +0.0 305,374 + -1.3 305,487 - -0.9 305,487 - -0.4 305,882 + ABZR87_RS17580 0.32 +1.3 305,882 + ABZR87_RS17580 0.32 -0.4 305,882 + ABZR87_RS17580 0.32 +0.4 305,883 - ABZR87_RS17580 0.32 +0.5 305,886 + ABZR87_RS17580 0.32 -1.1 305,886 + ABZR87_RS17580 0.32 -0.8 305,886 + ABZR87_RS17580 0.32 +1.0 305,886 + ABZR87_RS17580 0.32 -0.3 305,886 + ABZR87_RS17580 0.32 +0.0 305,886 + ABZR87_RS17580 0.32 +0.7 305,887 - ABZR87_RS17580 0.32 +0.8 305,887 - ABZR87_RS17580 0.32 -1.1 305,887 - ABZR87_RS17580 0.32 +0.4 305,887 - ABZR87_RS17580 0.32 +0.5 305,887 - ABZR87_RS17580 0.32 +0.4 306,055 - ABZR87_RS17580 0.44 -1.9 306,055 - ABZR87_RS17580 0.44 -0.1 306,055 - ABZR87_RS17580 0.44 -0.3 306,234 + ABZR87_RS17580 0.57 +0.2 306,234 + ABZR87_RS17580 0.57 -0.2 306,273 + ABZR87_RS17580 0.60 +0.1 306,274 - ABZR87_RS17580 0.60 +0.3 306,282 + ABZR87_RS17580 0.61 +0.5 306,339 + ABZR87_RS17580 0.65 +1.4 306,340 - ABZR87_RS17580 0.65 -1.0 306,450 + ABZR87_RS17580 0.73 +1.3 306,450 + ABZR87_RS17580 0.73 -0.8 306,450 + ABZR87_RS17580 0.73 -0.7 306,451 - ABZR87_RS17580 0.73 +1.0 306,451 - ABZR87_RS17580 0.73 -1.6 306,451 - ABZR87_RS17580 0.73 +0.5 306,451 - ABZR87_RS17580 0.73 +0.9 306,510 + ABZR87_RS17580 0.77 -1.2 306,543 + ABZR87_RS17580 0.80 -0.5 306,543 + ABZR87_RS17580 0.80 +1.2 306,543 + ABZR87_RS17580 0.80 +0.2 306,543 + ABZR87_RS17580 0.80 -0.6 306,544 - ABZR87_RS17580 0.80 -0.9 306,544 - ABZR87_RS17580 0.80 +1.0 306,556 - ABZR87_RS17580 0.81 -0.6 306,645 + ABZR87_RS17580 0.87 -0.6 306,645 + ABZR87_RS17580 0.87 -0.7 306,645 + ABZR87_RS17580 0.87 -0.3 306,646 - ABZR87_RS17580 0.87 +0.8 306,942 + -0.6 306,942 + +0.4 306,943 - -0.4 306,943 - -0.3 306,943 - +0.4 306,943 - +0.3 306,943 - -1.4 306,986 + +0.8 306,987 - +0.9 307,033 - -3.2 307,033 - +0.2 307,197 + +0.4 307,197 + -0.5 307,198 - -0.2 307,198 - -0.3 307,239 + -1.1 307,240 - +1.3 307,240 - -0.3 307,257 + +0.6 307,281 - -0.7 307,368 + ABZR87_RS17585 0.14 +0.4 307,368 + ABZR87_RS17585 0.14 -2.2 307,368 + ABZR87_RS17585 0.14 -2.3 307,368 + ABZR87_RS17585 0.14 +3.6 307,368 + ABZR87_RS17585 0.14 -0.1 307,369 - ABZR87_RS17585 0.14 -0.0 307,369 - ABZR87_RS17585 0.14 +0.3 307,431 + ABZR87_RS17585 0.17 -0.3 307,598 + ABZR87_RS17585 0.25 -0.1 307,598 + ABZR87_RS17585 0.25 -1.1 307,599 - ABZR87_RS17585 0.25 -0.4 307,599 - ABZR87_RS17585 0.25 +0.1 307,723 - ABZR87_RS17585 0.31 -1.6
Or see this region's nucleotide sequence