Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16935 and ABZR87_RS16940 are separated by 34 nucleotides ABZR87_RS16940 and ABZR87_RS16945 are separated by 88 nucleotides ABZR87_RS16945 and ABZR87_RS16950 are separated by 207 nucleotides
ABZR87_RS16935: ABZR87_RS16935 - enoyl-CoA hydratase, at 154,473 to 155,276
_RS16935
ABZR87_RS16940: ABZR87_RS16940 - thioredoxin family protein, at 155,311 to 155,865
_RS16940
ABZR87_RS16945: ABZR87_RS16945 - organic hydroperoxide resistance protein, at 155,954 to 156,370
_RS16945
ABZR87_RS16950: ABZR87_RS16950 - cytochrome c biogenesis protein DipZ, at 156,578 to 158,347
_RS16950
Position (kb) 155
156 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 154.312 kb on - strand at 154.351 kb on - strand at 154.393 kb on - strand at 154.432 kb on - strand at 154.731 kb on + strand, within ABZR87_RS16935 at 154.732 kb on - strand, within ABZR87_RS16935 at 154.732 kb on - strand, within ABZR87_RS16935 at 154.732 kb on - strand, within ABZR87_RS16935 at 154.732 kb on - strand, within ABZR87_RS16935 at 154.734 kb on + strand, within ABZR87_RS16935 at 154.997 kb on + strand, within ABZR87_RS16935 at 154.997 kb on + strand, within ABZR87_RS16935 at 155.172 kb on + strand, within ABZR87_RS16935 at 155.172 kb on + strand, within ABZR87_RS16935 at 155.172 kb on + strand, within ABZR87_RS16935 at 155.173 kb on - strand, within ABZR87_RS16935 at 155.173 kb on - strand, within ABZR87_RS16935 at 155.173 kb on - strand, within ABZR87_RS16935 at 155.173 kb on - strand, within ABZR87_RS16935 at 155.173 kb on - strand, within ABZR87_RS16935 at 155.173 kb on - strand, within ABZR87_RS16935 at 155.178 kb on + strand, within ABZR87_RS16935 at 155.179 kb on - strand, within ABZR87_RS16935 at 155.179 kb on - strand, within ABZR87_RS16935 at 155.274 kb on + strand at 155.274 kb on + strand at 155.274 kb on + strand at 155.399 kb on + strand, within ABZR87_RS16940 at 155.399 kb on + strand, within ABZR87_RS16940 at 155.399 kb on + strand, within ABZR87_RS16940 at 155.429 kb on + strand, within ABZR87_RS16940 at 155.429 kb on + strand, within ABZR87_RS16940 at 155.430 kb on - strand, within ABZR87_RS16940 at 155.474 kb on + strand, within ABZR87_RS16940 at 155.474 kb on + strand, within ABZR87_RS16940 at 155.474 kb on + strand, within ABZR87_RS16940 at 155.474 kb on + strand, within ABZR87_RS16940 at 155.474 kb on + strand, within ABZR87_RS16940 at 155.475 kb on - strand, within ABZR87_RS16940 at 155.558 kb on + strand, within ABZR87_RS16940 at 155.558 kb on + strand, within ABZR87_RS16940 at 155.559 kb on - strand, within ABZR87_RS16940 at 155.604 kb on - strand, within ABZR87_RS16940 at 155.612 kb on + strand, within ABZR87_RS16940 at 155.613 kb on - strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.660 kb on + strand, within ABZR87_RS16940 at 155.661 kb on - strand, within ABZR87_RS16940 at 155.661 kb on - strand, within ABZR87_RS16940 at 155.739 kb on + strand, within ABZR87_RS16940 at 155.739 kb on + strand, within ABZR87_RS16940 at 155.814 kb on - strand at 155.814 kb on - strand at 155.880 kb on - strand at 155.919 kb on + strand at 155.920 kb on - strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.928 kb on + strand at 155.929 kb on - strand at 155.929 kb on - strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.345 kb on + strand at 156.346 kb on - strand at 156.346 kb on - strand at 156.346 kb on - strand at 156.346 kb on - strand at 156.346 kb on - strand at 156.469 kb on + strand at 156.469 kb on + strand at 156.470 kb on - strand at 156.470 kb on - strand at 156.472 kb on + strand at 156.472 kb on + strand at 156.472 kb on + strand at 156.472 kb on + strand at 156.473 kb on - strand at 156.473 kb on - strand at 156.487 kb on + strand at 156.488 kb on - strand at 156.488 kb on - strand at 156.488 kb on - strand at 156.498 kb on + strand at 156.526 kb on - strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.529 kb on + strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.530 kb on - strand at 156.549 kb on - strand at 156.598 kb on - strand at 156.598 kb on - strand at 156.598 kb on - strand at 156.675 kb on + strand at 156.676 kb on - strand at 156.835 kb on - strand, within ABZR87_RS16950
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 154,312 - +0.0 154,351 - -1.5 154,393 - +0.3 154,432 - +3.6 154,731 + ABZR87_RS16935 0.32 -0.2 154,732 - ABZR87_RS16935 0.32 -0.6 154,732 - ABZR87_RS16935 0.32 +0.8 154,732 - ABZR87_RS16935 0.32 +0.6 154,732 - ABZR87_RS16935 0.32 +0.4 154,734 + ABZR87_RS16935 0.32 -1.3 154,997 + ABZR87_RS16935 0.65 -1.0 154,997 + ABZR87_RS16935 0.65 +0.2 155,172 + ABZR87_RS16935 0.87 +0.2 155,172 + ABZR87_RS16935 0.87 -0.4 155,172 + ABZR87_RS16935 0.87 -0.5 155,173 - ABZR87_RS16935 0.87 +0.0 155,173 - ABZR87_RS16935 0.87 +0.2 155,173 - ABZR87_RS16935 0.87 -2.9 155,173 - ABZR87_RS16935 0.87 +0.6 155,173 - ABZR87_RS16935 0.87 +0.8 155,173 - ABZR87_RS16935 0.87 +0.1 155,178 + ABZR87_RS16935 0.88 -0.6 155,179 - ABZR87_RS16935 0.88 +0.3 155,179 - ABZR87_RS16935 0.88 +0.6 155,274 + -0.5 155,274 + -0.1 155,274 + +0.1 155,399 + ABZR87_RS16940 0.16 +1.4 155,399 + ABZR87_RS16940 0.16 +0.0 155,399 + ABZR87_RS16940 0.16 +2.8 155,429 + ABZR87_RS16940 0.21 +0.2 155,429 + ABZR87_RS16940 0.21 -0.3 155,430 - ABZR87_RS16940 0.21 +1.1 155,474 + ABZR87_RS16940 0.29 -0.3 155,474 + ABZR87_RS16940 0.29 +3.3 155,474 + ABZR87_RS16940 0.29 +0.3 155,474 + ABZR87_RS16940 0.29 -1.4 155,474 + ABZR87_RS16940 0.29 +0.7 155,475 - ABZR87_RS16940 0.30 -0.4 155,558 + ABZR87_RS16940 0.45 +0.3 155,558 + ABZR87_RS16940 0.45 +0.3 155,559 - ABZR87_RS16940 0.45 +0.2 155,604 - ABZR87_RS16940 0.53 +1.3 155,612 + ABZR87_RS16940 0.54 +1.1 155,613 - ABZR87_RS16940 0.54 -0.6 155,660 + ABZR87_RS16940 0.63 -0.4 155,660 + ABZR87_RS16940 0.63 +0.7 155,660 + ABZR87_RS16940 0.63 -0.3 155,660 + ABZR87_RS16940 0.63 -0.1 155,660 + ABZR87_RS16940 0.63 -0.4 155,661 - ABZR87_RS16940 0.63 +0.9 155,661 - ABZR87_RS16940 0.63 -0.9 155,739 + ABZR87_RS16940 0.77 +0.1 155,739 + ABZR87_RS16940 0.77 +1.8 155,814 - +0.1 155,814 - -0.1 155,880 - -0.9 155,919 + +1.3 155,920 - +0.6 155,928 + -0.1 155,928 + +0.3 155,928 + -1.4 155,928 + +0.7 155,928 + +0.3 155,928 + +0.9 155,929 - +0.3 155,929 - -0.9 156,345 + +0.0 156,345 + +0.5 156,345 + -0.3 156,346 - +1.0 156,346 - -0.5 156,346 - +0.9 156,346 - +0.0 156,346 - -0.1 156,469 + +1.3 156,469 + +0.9 156,470 - +0.3 156,470 - +1.1 156,472 + -0.5 156,472 + +0.1 156,472 + +5.4 156,472 + +0.3 156,473 - -0.0 156,473 - -0.5 156,487 + -1.4 156,488 - -0.6 156,488 - +0.5 156,488 - -1.4 156,498 + -0.2 156,526 - -0.2 156,529 + +2.6 156,529 + +0.0 156,529 + -0.3 156,529 + -0.1 156,529 + +0.3 156,529 + -0.7 156,529 + -0.4 156,529 + -0.6 156,529 + +0.7 156,529 + -0.3 156,529 + -0.1 156,529 + +0.7 156,529 + -0.8 156,529 + +0.7 156,529 + -0.2 156,530 - -0.9 156,530 - -2.2 156,530 - -1.4 156,530 - +1.2 156,530 - -0.2 156,530 - +0.2 156,530 - -1.1 156,530 - +0.7 156,549 - +0.0 156,598 - -1.1 156,598 - -1.5 156,598 - -0.1 156,675 + -0.1 156,676 - -2.0 156,835 - ABZR87_RS16950 0.15 +1.1
Or see this region's nucleotide sequence