Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS16715 and ABZR87_RS16720 are separated by 302 nucleotides ABZR87_RS16720 and ABZR87_RS16725 are separated by 162 nucleotides ABZR87_RS16725 and ABZR87_RS16730 are separated by 82 nucleotides
ABZR87_RS16715: ABZR87_RS16715 - SulP family inorganic anion transporter, at 98,281 to 99,852
_RS16715
ABZR87_RS16720: ABZR87_RS16720 - collagen-like triple helix repeat-containing protein, at 100,155 to 101,300
_RS16720
ABZR87_RS16725: ABZR87_RS16725 - antibiotic biosynthesis monooxygenase, at 101,463 to 101,771
_RS16725
ABZR87_RS16730: ABZR87_RS16730 - 2-methylaconitate cis-trans isomerase PrpF, at 101,854 to 103,038
_RS16730
Position (kb) 100
101
102 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 99.207 kb on + strand, within ABZR87_RS16715 at 99.208 kb on - strand, within ABZR87_RS16715 at 99.208 kb on - strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.242 kb on + strand, within ABZR87_RS16715 at 99.243 kb on - strand, within ABZR87_RS16715 at 99.376 kb on + strand, within ABZR87_RS16715 at 99.376 kb on + strand, within ABZR87_RS16715 at 99.376 kb on + strand, within ABZR87_RS16715 at 99.377 kb on - strand, within ABZR87_RS16715 at 99.377 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.635 kb on - strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.691 kb on + strand, within ABZR87_RS16715 at 99.692 kb on - strand, within ABZR87_RS16715 at 99.855 kb on + strand at 99.855 kb on + strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.856 kb on - strand at 99.887 kb on + strand at 99.907 kb on + strand at 99.907 kb on + strand at 99.907 kb on + strand at 99.907 kb on + strand at 99.989 kb on + strand at 99.989 kb on + strand at 99.990 kb on - strand at 100.074 kb on + strand at 100.105 kb on + strand at 100.106 kb on - strand at 100.134 kb on + strand at 100.535 kb on + strand, within ABZR87_RS16720 at 100.913 kb on + strand, within ABZR87_RS16720 at 100.914 kb on - strand, within ABZR87_RS16720 at 101.377 kb on + strand at 101.377 kb on + strand at 101.377 kb on + strand at 101.389 kb on + strand at 101.389 kb on + strand at 101.389 kb on + strand at 101.390 kb on - strand at 101.415 kb on + strand at 101.415 kb on + strand at 101.415 kb on + strand at 101.415 kb on + strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.416 kb on - strand at 101.420 kb on + strand at 101.420 kb on + strand at 101.421 kb on - strand at 101.421 kb on - strand at 102.173 kb on + strand, within ABZR87_RS16730 at 102.173 kb on + strand, within ABZR87_RS16730 at 102.173 kb on + strand, within ABZR87_RS16730 at 102.174 kb on - strand, within ABZR87_RS16730 at 102.174 kb on - strand, within ABZR87_RS16730 at 102.174 kb on - strand, within ABZR87_RS16730
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 99,207 + ABZR87_RS16715 0.59 -0.5 99,208 - ABZR87_RS16715 0.59 +0.8 99,208 - ABZR87_RS16715 0.59 +0.6 99,242 + ABZR87_RS16715 0.61 -0.5 99,242 + ABZR87_RS16715 0.61 -0.6 99,242 + ABZR87_RS16715 0.61 +0.4 99,242 + ABZR87_RS16715 0.61 +0.1 99,243 - ABZR87_RS16715 0.61 +0.9 99,376 + ABZR87_RS16715 0.70 -1.6 99,376 + ABZR87_RS16715 0.70 +1.3 99,376 + ABZR87_RS16715 0.70 +0.9 99,377 - ABZR87_RS16715 0.70 +1.1 99,377 - ABZR87_RS16715 0.70 +2.6 99,635 - ABZR87_RS16715 0.86 -1.4 99,635 - ABZR87_RS16715 0.86 +1.0 99,635 - ABZR87_RS16715 0.86 -0.0 99,635 - ABZR87_RS16715 0.86 +0.4 99,635 - ABZR87_RS16715 0.86 -1.5 99,691 + ABZR87_RS16715 0.90 -0.4 99,691 + ABZR87_RS16715 0.90 -0.2 99,691 + ABZR87_RS16715 0.90 +0.5 99,691 + ABZR87_RS16715 0.90 -0.3 99,691 + ABZR87_RS16715 0.90 +0.7 99,691 + ABZR87_RS16715 0.90 +1.4 99,691 + ABZR87_RS16715 0.90 +0.2 99,691 + ABZR87_RS16715 0.90 +0.6 99,692 - ABZR87_RS16715 0.90 -0.3 99,855 + +1.6 99,855 + +1.4 99,856 - +0.9 99,856 - -0.5 99,856 - -0.6 99,856 - -0.4 99,856 - +2.0 99,856 - +1.0 99,887 + -0.1 99,907 + -1.7 99,907 + +0.0 99,907 + -0.3 99,907 + +2.2 99,989 + -0.5 99,989 + -1.2 99,990 - -0.6 100,074 + +3.6 100,105 + -2.1 100,106 - -0.5 100,134 + +0.2 100,535 + ABZR87_RS16720 0.33 +1.6 100,913 + ABZR87_RS16720 0.66 -0.8 100,914 - ABZR87_RS16720 0.66 +1.4 101,377 + -0.3 101,377 + +3.2 101,377 + -1.1 101,389 + +0.8 101,389 + -0.3 101,389 + +0.3 101,390 - +0.2 101,415 + +1.8 101,415 + -0.0 101,415 + -0.7 101,415 + -1.2 101,416 - -0.3 101,416 - +0.3 101,416 - +0.9 101,416 - +0.1 101,416 - +0.9 101,416 - -0.3 101,420 + -0.0 101,420 + -0.3 101,421 - +0.1 101,421 - -1.2 102,173 + ABZR87_RS16730 0.27 -0.2 102,173 + ABZR87_RS16730 0.27 -0.8 102,173 + ABZR87_RS16730 0.27 -2.0 102,174 - ABZR87_RS16730 0.27 -1.6 102,174 - ABZR87_RS16730 0.27 -2.3 102,174 - ABZR87_RS16730 0.27 -2.4
Or see this region's nucleotide sequence