Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15670

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
3,303,783	+				+0.5
3,303,937	+		ABZR87_RS15665	0.17	-1.0
3,303,938	-		ABZR87_RS15665	0.17	-0.0
3,303,938	-		ABZR87_RS15665	0.17	-2.7
3,303,970	+		ABZR87_RS15665	0.21	-1.3
3,303,971	-		ABZR87_RS15665	0.21	-0.3
3,304,003	+		ABZR87_RS15665	0.25	-1.8
3,304,003	+		ABZR87_RS15665	0.25	-1.1
3,304,003	+		ABZR87_RS15665	0.25	-0.1
3,304,003	+		ABZR87_RS15665	0.25	-2.2
3,304,003	+		ABZR87_RS15665	0.25	-1.9
3,304,004	-		ABZR87_RS15665	0.26	-1.2
3,304,004	-		ABZR87_RS15665	0.26	+1.0
3,304,006	+		ABZR87_RS15665	0.26	-1.7
3,304,006	+		ABZR87_RS15665	0.26	+0.1
3,304,054	+		ABZR87_RS15665	0.32	-1.8
3,304,214	+		ABZR87_RS15665	0.52	-0.5
3,304,214	+		ABZR87_RS15665	0.52	-1.2
3,304,215	-		ABZR87_RS15665	0.52	-2.5
3,304,215	-		ABZR87_RS15665	0.52	-1.3
3,304,394	+		ABZR87_RS15665	0.74	-0.9
3,304,581	+				-0.7
3,304,581	+				+1.3
3,304,593	-				-1.3
3,304,612	+				-0.2
3,304,612	+				-0.5
3,304,612	+				-2.0
3,304,613	-				+0.2
3,304,613	-				+0.3
3,304,662	+				+0.4
3,304,663	+				-0.0
3,304,664	-				-2.2
3,304,673	+				-1.2
3,304,674	-				-0.0
3,304,674	-				-0.1
3,304,674	-				-0.8
3,304,674	-				-0.2
3,304,756	+				-0.8
3,304,757	-				+0.5
3,304,757	-				-1.3
3,304,757	-				+0.2
3,304,757	-				+2.6
3,304,825	+				-0.1
3,304,825	+				-0.4
3,304,825	+				+0.2
3,304,825	+				-0.3
3,304,825	+				-2.3
3,304,825	+				-1.8
3,304,825	+				-0.3
3,304,825	+				-2.1
3,304,825	+				+0.6
3,304,825	+				-2.6
3,304,826	-				-2.3
3,304,826	-				+2.7
3,304,975	+		ABZR87_RS15670	0.25	+0.6
3,304,975	+		ABZR87_RS15670	0.25	+0.3
3,304,975	+		ABZR87_RS15670	0.25	+0.0
3,304,975	+		ABZR87_RS15670	0.25	-0.3
3,304,975	+		ABZR87_RS15670	0.25	+1.1
3,304,975	+		ABZR87_RS15670	0.25	+3.3
3,304,975	+		ABZR87_RS15670	0.25	-0.7
3,304,975	+		ABZR87_RS15670	0.25	-0.4
3,304,975	+		ABZR87_RS15670	0.25	+1.0
3,304,975	+		ABZR87_RS15670	0.25	-0.4
3,304,975	+		ABZR87_RS15670	0.25	+0.5
3,304,976	-		ABZR87_RS15670	0.25	-0.9
3,304,976	-		ABZR87_RS15670	0.25	+1.1
3,304,976	-		ABZR87_RS15670	0.25	-0.1
3,304,976	-		ABZR87_RS15670	0.25	+0.0
3,304,976	-		ABZR87_RS15670	0.25	+0.4
3,304,976	-		ABZR87_RS15670	0.25	-0.8
3,304,976	-		ABZR87_RS15670	0.25	-0.3
3,304,976	-		ABZR87_RS15670	0.25	+0.2
3,304,976	-		ABZR87_RS15670	0.25	+0.9
3,304,976	-		ABZR87_RS15670	0.25	-0.6
3,304,976	-		ABZR87_RS15670	0.25	-0.2
3,304,976	-		ABZR87_RS15670	0.25	-0.7
3,304,976	-		ABZR87_RS15670	0.25	-1.6
3,304,976	-		ABZR87_RS15670	0.25	+0.5
3,304,976	-		ABZR87_RS15670	0.25	-0.1
3,304,976	-		ABZR87_RS15670	0.25	+0.2
3,304,976	-		ABZR87_RS15670	0.25	-1.2
3,304,976	-		ABZR87_RS15670	0.25	+0.2
3,304,976	-		ABZR87_RS15670	0.25	+0.7
3,305,012	+		ABZR87_RS15670	0.29	-0.4
3,305,012	+		ABZR87_RS15670	0.29	+0.2
3,305,055	+		ABZR87_RS15670	0.34	-1.0
3,305,055	+		ABZR87_RS15670	0.34	+0.3
3,305,055	+		ABZR87_RS15670	0.34	+0.0
3,305,055	+		ABZR87_RS15670	0.34	+0.1
3,305,056	-		ABZR87_RS15670	0.34	-0.5
3,305,056	-		ABZR87_RS15670	0.34	+0.7
3,305,056	-		ABZR87_RS15670	0.34	+0.4
3,305,065	+		ABZR87_RS15670	0.35	-1.0
3,305,066	-		ABZR87_RS15670	0.35	-0.2
3,305,066	-		ABZR87_RS15670	0.35	+1.7
3,305,148	-		ABZR87_RS15670	0.45	-0.1
3,305,362	+		ABZR87_RS15670	0.69	-1.4
3,305,362	+		ABZR87_RS15670	0.69	-1.8
3,305,362	+		ABZR87_RS15670	0.69	-0.1
3,305,362	+		ABZR87_RS15670	0.69	+0.0
3,305,362	+		ABZR87_RS15670	0.69	-0.9
3,305,362	+		ABZR87_RS15670	0.69	+0.1
3,305,363	-		ABZR87_RS15670	0.69	-0.5
3,305,363	-		ABZR87_RS15670	0.69	-0.4
3,305,504	+		ABZR87_RS15670	0.85	-0.2
3,305,681	-				+0.4
3,305,685	+				+0.6
3,305,696	-				+1.0
3,305,699	+				-0.9
3,305,699	+				+1.0
3,305,699	+				+0.6
3,305,699	+				+0.5
3,305,699	+				+1.4
3,305,699	+				+0.7
3,305,699	+				-0.8
3,305,700	-				+0.3
3,305,700	-				+2.2
3,305,700	-				-1.4
3,305,700	-				+1.4
3,305,700	-				-0.6
3,305,700	-				+0.3
3,305,700	-				+1.0
3,305,730	+				-0.9
3,305,744	+				-0.4
3,305,847	-				-2.4
3,305,858	+				-1.2
3,305,858	+				+0.4
3,305,858	+				+0.1
3,305,858	+				-1.5
3,305,858	+				-1.4
3,305,858	+				-0.1
3,305,858	+				-0.8
3,305,859	-				-0.4
3,305,859	-				+0.8
3,305,859	-				+0.8
3,305,859	-				-0.2
3,306,029	+		ABZR87_RS15675	0.21	-0.4
3,306,029	+		ABZR87_RS15675	0.21	+1.0
3,306,029	+		ABZR87_RS15675	0.21	-1.2
3,306,029	+		ABZR87_RS15675	0.21	+0.9
3,306,029	+		ABZR87_RS15675	0.21	+0.7
3,306,029	+		ABZR87_RS15675	0.21	-0.3
3,306,029	+		ABZR87_RS15675	0.21	-0.2
3,306,030	-		ABZR87_RS15675	0.21	-1.1
3,306,030	-		ABZR87_RS15675	0.21	+1.8
3,306,030	-		ABZR87_RS15675	0.21	+0.7
3,306,119	+		ABZR87_RS15675	0.28	-1.3
3,306,444	+		ABZR87_RS15675	0.53	-1.4
3,306,444	+		ABZR87_RS15675	0.53	-0.6
3,306,444	+		ABZR87_RS15675	0.53	+0.8
3,306,445	-		ABZR87_RS15675	0.53	-0.7
3,306,445	-		ABZR87_RS15675	0.53	+0.5
3,306,445	-		ABZR87_RS15675	0.53	+0.7
3,306,455	+		ABZR87_RS15675	0.53	-0.4
3,306,455	+		ABZR87_RS15675	0.53	-2.0
3,306,455	+		ABZR87_RS15675	0.53	+0.1
3,306,456	-		ABZR87_RS15675	0.53	+0.5
3,306,456	-		ABZR87_RS15675	0.53	+0.9
3,306,456	-		ABZR87_RS15675	0.53	-0.1
3,306,456	-		ABZR87_RS15675	0.53	-0.1