Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS15615

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS15610 and ABZR87_RS15615 are separated by 46 nucleotidesABZR87_RS15615 and ABZR87_RS15620 are separated by 131 nucleotides ABZR87_RS15610: ABZR87_RS15610 - DNA primase, at 3,291,153 to 3,292,964 _RS15610 ABZR87_RS15615: ABZR87_RS15615 - GatB/YqeY domain-containing protein, at 3,293,011 to 3,293,460 _RS15615 ABZR87_RS15620: ABZR87_RS15620 - NAD(P)/FAD-dependent oxidoreductase, at 3,293,592 to 3,294,815 _RS15620 Position (kb) 3293 3294Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3293.194 kb on - strand, within ABZR87_RS15615at 3293.194 kb on - strand, within ABZR87_RS15615at 3293.196 kb on - strand, within ABZR87_RS15615at 3293.196 kb on - strand, within ABZR87_RS15615at 3293.196 kb on - strand, within ABZR87_RS15615at 3293.196 kb on - strand, within ABZR87_RS15615at 3293.196 kb on - strand, within ABZR87_RS15615at 3293.196 kb on - strand, within ABZR87_RS15615at 3293.196 kb on - strand, within ABZR87_RS15615at 3293.196 kb on - strand, within ABZR87_RS15615at 3293.653 kb on + strandat 3293.654 kb on - strandat 3293.698 kb on + strandat 3293.698 kb on + strandat 3293.698 kb on + strandat 3293.698 kb on + strandat 3293.699 kb on - strandat 3293.699 kb on - strandat 3293.750 kb on + strand, within ABZR87_RS15620at 3293.750 kb on + strand, within ABZR87_RS15620at 3293.949 kb on - strand, within ABZR87_RS15620at 3294.394 kb on + strand, within ABZR87_RS15620at 3294.395 kb on - strand, within ABZR87_RS15620at 3294.395 kb on - strand, within ABZR87_RS15620

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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3,293,194 - ABZR87_RS15615 0.41 -0.6
3,293,194 - ABZR87_RS15615 0.41 -2.4
3,293,196 - ABZR87_RS15615 0.41 -0.7
3,293,196 - ABZR87_RS15615 0.41 +3.4
3,293,196 - ABZR87_RS15615 0.41 +0.1
3,293,196 - ABZR87_RS15615 0.41 -0.5
3,293,196 - ABZR87_RS15615 0.41 -0.9
3,293,196 - ABZR87_RS15615 0.41 -1.3
3,293,196 - ABZR87_RS15615 0.41 -0.0
3,293,196 - ABZR87_RS15615 0.41 -1.7
3,293,653 + +0.7
3,293,654 - +0.1
3,293,698 + +0.1
3,293,698 + +0.2
3,293,698 + +0.8
3,293,698 + -2.7
3,293,699 - -1.2
3,293,699 - +0.3
3,293,750 + ABZR87_RS15620 0.13 -0.8
3,293,750 + ABZR87_RS15620 0.13 +1.7
3,293,949 - ABZR87_RS15620 0.29 -1.2
3,294,394 + ABZR87_RS15620 0.66 +1.1
3,294,395 - ABZR87_RS15620 0.66 +0.2
3,294,395 - ABZR87_RS15620 0.66 -0.1

Or see this region's nucleotide sequence