Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS13545

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
2,869,473	+				+1.2
2,869,473	+				+3.8
2,869,473	+				-0.5
2,869,473	+				-0.8
2,869,473	+				+0.6
2,869,473	+				-1.0
2,869,473	+				+0.4
2,869,473	+				-0.2
2,869,473	+				+0.7
2,869,474	-				-1.1
2,869,474	-				+1.5
2,869,474	-				-0.3
2,869,474	-				-0.1
2,869,497	+				-1.1
2,869,630	+				-0.1
2,869,630	+				+0.7
2,869,630	+				-0.1
2,869,864	-		ABZR87_RS13540	0.73	-1.6
2,869,911	-		ABZR87_RS13540	0.89	-1.7
2,870,264	+				-0.2
2,870,264	+				-1.7
2,870,264	+				+3.8
2,870,265	-				+0.5
2,870,265	-				+0.5
2,870,351	+				-0.1
2,870,351	+				-0.0
2,870,351	+				-0.5
2,870,352	-				+1.4
2,870,352	-				-1.3
2,870,352	-				+2.7
2,870,352	-				-0.9
2,870,352	-				-1.6
2,870,364	+				+0.3
2,870,364	+				-0.5
2,870,364	+				+1.0
2,870,364	+				-1.3
2,870,364	+				-0.9
2,870,365	-				-0.2
2,870,365	-				-1.0
2,870,365	-				-0.7
2,870,365	-				-0.2
2,870,365	-				-0.6
2,870,367	+				+1.9
2,870,368	-				+2.3
2,870,540	+				-0.6
2,870,541	-				+0.4
2,870,549	+				+2.0
2,870,550	-				-1.2
2,870,550	-				-0.8
2,870,550	-				+0.1
2,870,700	+		ABZR87_RS13545	0.16	+2.0
2,870,701	-		ABZR87_RS13545	0.16	+0.0
2,870,930	+		ABZR87_RS13545	0.32	-0.3
2,870,930	+		ABZR87_RS13545	0.32	+0.3
2,871,098	+		ABZR87_RS13545	0.44	+0.7
2,871,098	+		ABZR87_RS13545	0.44	+1.0
2,871,098	+		ABZR87_RS13545	0.44	-0.7
2,871,098	+		ABZR87_RS13545	0.44	-1.4
2,871,098	+		ABZR87_RS13545	0.44	-0.1
2,871,099	-		ABZR87_RS13545	0.44	-1.0
2,871,099	-		ABZR87_RS13545	0.44	+0.2
2,871,099	-		ABZR87_RS13545	0.44	-0.4
2,871,099	-		ABZR87_RS13545	0.44	-0.2
2,871,099	-		ABZR87_RS13545	0.44	+0.8
2,871,518	+		ABZR87_RS13545	0.73	+0.3
2,871,518	+		ABZR87_RS13545	0.73	-0.2
2,871,518	+		ABZR87_RS13545	0.73	+0.1
2,871,519	-		ABZR87_RS13545	0.73	+0.6
2,871,561	-		ABZR87_RS13545	0.76	+0.8
2,871,561	-		ABZR87_RS13545	0.76	-2.1
2,871,561	-		ABZR87_RS13545	0.76	-0.4
2,871,561	-		ABZR87_RS13545	0.76	+0.1
2,871,617	+		ABZR87_RS13545	0.80	-3.0
2,871,618	-		ABZR87_RS13545	0.80	+0.6
2,871,623	+		ABZR87_RS13545	0.81	-1.1
2,871,624	-		ABZR87_RS13545	0.81	-0.0
2,871,624	-		ABZR87_RS13545	0.81	-0.3
2,871,624	-		ABZR87_RS13545	0.81	+0.4
2,871,624	-		ABZR87_RS13545	0.81	-0.4
2,871,624	-		ABZR87_RS13545	0.81	-1.6
2,871,624	-		ABZR87_RS13545	0.81	-0.7
2,871,627	+		ABZR87_RS13545	0.81	+0.5
2,871,627	+		ABZR87_RS13545	0.81	+0.1
2,871,628	-		ABZR87_RS13545	0.81	+0.8
2,871,628	-		ABZR87_RS13545	0.81	-0.6
2,871,628	-		ABZR87_RS13545	0.81	-1.3
2,871,628	-		ABZR87_RS13545	0.81	-0.8
2,871,628	-		ABZR87_RS13545	0.81	-0.1
2,871,628	-		ABZR87_RS13545	0.81	-0.6
2,871,628	-		ABZR87_RS13545	0.81	+0.4
2,871,628	-		ABZR87_RS13545	0.81	+1.2
2,871,629	+		ABZR87_RS13545	0.81	+0.7
2,871,629	+		ABZR87_RS13545	0.81	+0.1
2,871,629	+		ABZR87_RS13545	0.81	+1.2
2,871,629	+		ABZR87_RS13545	0.81	+1.0
2,871,629	+		ABZR87_RS13545	0.81	-0.8
2,871,629	+		ABZR87_RS13545	0.81	-0.4
2,871,630	-		ABZR87_RS13545	0.81	+0.3
2,871,630	-		ABZR87_RS13545	0.81	+0.7
2,871,630	-		ABZR87_RS13545	0.81	-0.3
2,871,630	-		ABZR87_RS13545	0.81	+0.3
2,871,630	-		ABZR87_RS13545	0.81	+0.0
2,871,630	-		ABZR87_RS13545	0.81	-0.9
2,871,630	-		ABZR87_RS13545	0.81	+1.1
2,871,630	-		ABZR87_RS13545	0.81	+1.6
2,871,630	-		ABZR87_RS13545	0.81	+0.9
2,871,630	-		ABZR87_RS13545	0.81	+0.4
2,871,630	-		ABZR87_RS13545	0.81	-0.4
2,871,671	+		ABZR87_RS13545	0.84	-1.0
2,871,671	+		ABZR87_RS13545	0.84	-0.7
2,871,901	+				-0.1
2,871,901	+				-2.5
2,871,901	+				+0.2
2,871,902	-				-1.0
2,871,978	-				-0.1
2,872,025	-				-0.3
2,872,049	+				+0.3
2,872,092	+				-1.3
2,872,093	-				+0.3
2,872,106	+				-0.1
2,872,107	-				-0.3
2,872,169	+				-0.1
2,872,169	+				-0.4
2,872,169	+				-0.0
2,872,169	+				+0.4
2,872,169	+				+1.4
2,872,169	+				+4.5
2,872,170	-				-0.9
2,872,170	-				+1.1
2,872,170	-				-0.4
2,872,170	-				-0.6
2,872,170	-				+0.4
2,872,170	-				+1.1
2,872,170	-				+1.2
2,872,326	+		ABZR87_RS13550	0.21	-0.6
2,872,327	-		ABZR87_RS13550	0.21	+0.4
2,872,327	-		ABZR87_RS13550	0.21	+0.8
2,872,433	+		ABZR87_RS13550	0.31	-1.8
2,872,433	+		ABZR87_RS13550	0.31	-1.2
2,872,433	+		ABZR87_RS13550	0.31	-2.1
2,872,433	+		ABZR87_RS13550	0.31	+2.5
2,872,434	-		ABZR87_RS13550	0.31	+1.8
2,872,434	-		ABZR87_RS13550	0.31	-1.5
2,872,434	-		ABZR87_RS13550	0.31	-0.9
2,872,770	+		ABZR87_RS13550	0.62	-0.2
2,872,770	+		ABZR87_RS13550	0.62	+1.0
2,872,770	+		ABZR87_RS13550	0.62	+1.0
2,872,770	+		ABZR87_RS13550	0.62	+1.8
2,872,770	+		ABZR87_RS13550	0.62	-1.0
2,872,770	+		ABZR87_RS13550	0.62	-0.3
2,872,770	+		ABZR87_RS13550	0.62	+2.0
2,872,770	+		ABZR87_RS13550	0.62	-0.1
2,872,770	+		ABZR87_RS13550	0.62	-0.9
2,872,771	-		ABZR87_RS13550	0.62	-0.1
2,872,771	-		ABZR87_RS13550	0.62	+1.6
2,872,771	-		ABZR87_RS13550	0.62	-1.4
2,872,771	-		ABZR87_RS13550	0.62	+0.7
2,872,771	-		ABZR87_RS13550	0.62	-1.4
2,872,773	+		ABZR87_RS13550	0.62	+0.3
2,872,773	+		ABZR87_RS13550	0.62	-0.2
2,872,773	+		ABZR87_RS13550	0.62	+0.4
2,872,774	-		ABZR87_RS13550	0.62	+0.4
2,872,774	-		ABZR87_RS13550	0.62	-0.9
2,872,774	-		ABZR87_RS13550	0.62	+1.9
2,872,862	+		ABZR87_RS13550	0.70	+0.5
2,872,862	+		ABZR87_RS13550	0.70	-1.5
2,872,863	-		ABZR87_RS13550	0.71	-1.6
2,872,863	-		ABZR87_RS13550	0.71	-0.7
2,872,863	-		ABZR87_RS13550	0.71	+1.6
2,872,863	-		ABZR87_RS13550	0.71	+0.4