Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS08875 and ABZR87_RS08880 are separated by 127 nucleotides ABZR87_RS08880 and ABZR87_RS08885 are separated by 6 nucleotides
ABZR87_RS08875: ABZR87_RS08875 - bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II, at 1,885,434 to 1,886,573
_RS08875
ABZR87_RS08880: ABZR87_RS08880 - riboflavin synthase, at 1,886,701 to 1,887,354
_RS08880
ABZR87_RS08885: ABZR87_RS08885 - bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD, at 1,887,361 to 1,888,473
_RS08885
Position (kb) 1886
1887
1888 Strain fitness (log2 ratio) -1
0
1 at 1886.314 kb on - strand, within ABZR87_RS08875 at 1886.579 kb on - strand at 1886.579 kb on - strand at 1886.579 kb on - strand at 1886.664 kb on + strand at 1886.664 kb on + strand at 1886.664 kb on + strand at 1886.664 kb on + strand at 1886.665 kb on - strand at 1886.665 kb on - strand at 1886.665 kb on - strand at 1887.355 kb on - strand at 1887.355 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 1,886,314 - ABZR87_RS08875 0.77 +0.7 1,886,579 - -0.1 1,886,579 - +0.9 1,886,579 - +1.0 1,886,664 + -0.2 1,886,664 + -0.4 1,886,664 + +0.1 1,886,664 + +0.1 1,886,665 - +0.4 1,886,665 - -1.3 1,886,665 - -0.3 1,887,355 - +0.8 1,887,355 - +0.4
Or see this region's nucleotide sequence