Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS08445

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS08445 and ABZR87_RS08450 are separated by 101 nucleotides ABZR87_RS08445: ABZR87_RS08445 - co-chaperone GroES, at 1,793,834 to 1,794,124 _RS08445 ABZR87_RS08450: ABZR87_RS08450 - chaperonin GroEL, at 1,794,226 to 1,795,869 _RS08450 Position (kb) 1793 1794 1795Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1792.887 kb on - strandat 1792.887 kb on - strandat 1792.887 kb on - strandat 1792.950 kb on + strandat 1792.950 kb on + strandat 1792.950 kb on + strandat 1792.950 kb on + strandat 1792.950 kb on + strandat 1792.950 kb on + strandat 1792.951 kb on - strandat 1792.988 kb on + strandat 1792.989 kb on - strandat 1792.989 kb on - strandat 1793.008 kb on + strandat 1793.008 kb on + strandat 1793.009 kb on - strandat 1793.048 kb on - strandat 1793.048 kb on - strandat 1793.067 kb on + strandat 1793.067 kb on + strandat 1793.067 kb on + strandat 1793.067 kb on + strandat 1793.067 kb on + strandat 1793.067 kb on + strandat 1793.067 kb on + strandat 1793.067 kb on + strandat 1793.067 kb on + strandat 1793.068 kb on - strandat 1793.068 kb on - strandat 1793.068 kb on - strandat 1793.068 kb on - strandat 1793.068 kb on - strandat 1793.068 kb on - strandat 1793.068 kb on - strandat 1793.068 kb on - strandat 1793.068 kb on - strandat 1793.068 kb on - strandat 1793.069 kb on + strandat 1793.069 kb on + strandat 1793.069 kb on + strandat 1793.069 kb on + strandat 1793.069 kb on + strandat 1793.069 kb on + strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.070 kb on - strandat 1793.071 kb on + strandat 1793.071 kb on + strandat 1793.071 kb on + strandat 1793.072 kb on - strandat 1793.072 kb on - strandat 1793.072 kb on - strandat 1793.072 kb on - strandat 1793.172 kb on + strandat 1793.172 kb on + strandat 1793.173 kb on - strandat 1793.214 kb on - strandat 1793.361 kb on + strandat 1793.362 kb on - strandat 1793.395 kb on + strandat 1793.406 kb on - strandat 1793.449 kb on - strandat 1793.520 kb on + strandat 1793.520 kb on + strandat 1793.527 kb on + strandat 1793.528 kb on - strandat 1793.567 kb on - strandat 1793.619 kb on - strandat 1793.700 kb on + strandat 1793.700 kb on + strandat 1793.700 kb on + strandat 1793.712 kb on - strandat 1793.713 kb on + strandat 1793.713 kb on + strandat 1793.717 kb on + strandat 1793.717 kb on + strandat 1793.740 kb on + strandat 1793.740 kb on + strandat 1793.740 kb on + strandat 1793.740 kb on + strandat 1794.122 kb on + strandat 1794.122 kb on + strandat 1794.147 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,792,887 - -3.2
1,792,887 - +1.2
1,792,887 - +1.9
1,792,950 + +1.1
1,792,950 + -0.1
1,792,950 + +0.0
1,792,950 + +0.2
1,792,950 + -1.4
1,792,950 + +0.5
1,792,951 - +0.8
1,792,988 + +0.1
1,792,989 - +0.2
1,792,989 - -0.1
1,793,008 + +1.8
1,793,008 + +0.1
1,793,009 - -0.1
1,793,048 - +0.7
1,793,048 - -1.1
1,793,067 + -0.3
1,793,067 + +0.5
1,793,067 + +0.0
1,793,067 + +0.8
1,793,067 + -2.1
1,793,067 + +1.7
1,793,067 + -2.3
1,793,067 + +0.4
1,793,067 + +0.0
1,793,068 - +1.2
1,793,068 - +1.1
1,793,068 - +2.1
1,793,068 - -0.6
1,793,068 - +0.2
1,793,068 - +0.7
1,793,068 - -0.5
1,793,068 - +0.9
1,793,068 - +0.7
1,793,068 - -1.6
1,793,069 + +1.2
1,793,069 + -1.3
1,793,069 + -2.4
1,793,069 + +0.1
1,793,069 + +1.4
1,793,069 + -0.8
1,793,070 - -0.1
1,793,070 - -0.9
1,793,070 - +0.4
1,793,070 - -0.6
1,793,070 - +2.3
1,793,070 - +0.3
1,793,070 - +0.4
1,793,070 - -0.2
1,793,070 - -2.4
1,793,070 - +1.7
1,793,070 - +0.2
1,793,070 - +1.8
1,793,070 - +2.9
1,793,070 - -0.3
1,793,070 - -1.9
1,793,070 - -0.8
1,793,070 - +0.1
1,793,070 - +0.2
1,793,071 + +1.0
1,793,071 + -1.0
1,793,071 + +0.4
1,793,072 - +2.3
1,793,072 - -2.2
1,793,072 - +1.7
1,793,072 - +1.8
1,793,172 + +0.2
1,793,172 + +0.0
1,793,173 - -0.1
1,793,214 - -2.7
1,793,361 + +1.2
1,793,362 - +0.5
1,793,395 + +0.3
1,793,406 - +0.1
1,793,449 - -1.8
1,793,520 + -0.2
1,793,520 + -1.3
1,793,527 + -0.6
1,793,528 - -0.5
1,793,567 - -0.5
1,793,619 - -0.0
1,793,700 + +0.0
1,793,700 + +0.4
1,793,700 + +0.1
1,793,712 - -0.2
1,793,713 + +0.5
1,793,713 + +1.3
1,793,717 + -1.4
1,793,717 + +0.9
1,793,740 + -1.6
1,793,740 + -1.6
1,793,740 + -0.7
1,793,740 + +0.7
1,794,122 + -1.5
1,794,122 + -0.3
1,794,147 + -0.6

Or see this region's nucleotide sequence