Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS07955

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,690,369	+		ABZR87_RS07945	0.57	+0.2
1,690,369	+		ABZR87_RS07945	0.57	+0.9
1,690,369	+		ABZR87_RS07945	0.57	+0.7
1,690,369	+		ABZR87_RS07945	0.57	+0.8
1,690,370	-		ABZR87_RS07945	0.57	-0.3
1,690,372	+		ABZR87_RS07945	0.57	-0.3
1,690,372	+		ABZR87_RS07945	0.57	-1.5
1,690,372	+		ABZR87_RS07945	0.57	-0.4
1,690,372	+		ABZR87_RS07945	0.57	-0.1
1,690,373	-		ABZR87_RS07945	0.57	+0.6
1,690,373	-		ABZR87_RS07945	0.57	+0.4
1,690,373	-		ABZR87_RS07945	0.57	+0.7
1,690,466	-		ABZR87_RS07945	0.72	-0.3
1,690,466	-		ABZR87_RS07945	0.72	+1.5
1,690,466	-		ABZR87_RS07945	0.72	+0.5
1,690,466	-		ABZR87_RS07945	0.72	-0.1
1,690,468	+		ABZR87_RS07945	0.72	+0.2
1,690,468	+		ABZR87_RS07945	0.72	-0.3
1,690,468	+		ABZR87_RS07945	0.72	+0.1
1,690,469	-		ABZR87_RS07945	0.72	-0.5
1,690,469	-		ABZR87_RS07945	0.72	+0.5
1,690,601	+				+0.2
1,690,648	+				+0.0
1,690,648	+				+3.7
1,690,648	+				+0.6
1,690,649	-				+1.5
1,690,757	+		ABZR87_RS07950	0.31	-0.1
1,690,757	+		ABZR87_RS07950	0.31	-1.2
1,690,757	+		ABZR87_RS07950	0.31	-0.9
1,690,757	+		ABZR87_RS07950	0.31	+0.2
1,690,757	+		ABZR87_RS07950	0.31	-1.3
1,690,757	+		ABZR87_RS07950	0.31	+0.1
1,690,757	+		ABZR87_RS07950	0.31	-0.0
1,690,757	+		ABZR87_RS07950	0.31	+0.5
1,690,758	-		ABZR87_RS07950	0.31	-0.6
1,690,758	-		ABZR87_RS07950	0.31	-0.1
1,690,758	-		ABZR87_RS07950	0.31	-1.5
1,690,758	-		ABZR87_RS07950	0.31	+0.8
1,690,758	-		ABZR87_RS07950	0.31	+0.3
1,690,758	-		ABZR87_RS07950	0.31	+0.7
1,690,758	-		ABZR87_RS07950	0.31	+0.0
1,690,758	-		ABZR87_RS07950	0.31	-0.1
1,690,758	-		ABZR87_RS07950	0.31	-0.1
1,690,758	-		ABZR87_RS07950	0.31	-0.1
1,690,758	-		ABZR87_RS07950	0.31	-0.3
1,690,763	-		ABZR87_RS07950	0.33	-1.0
1,690,763	-		ABZR87_RS07950	0.33	+0.2
1,690,763	-		ABZR87_RS07950	0.33	-0.7
1,690,763	-		ABZR87_RS07950	0.33	+0.5
1,690,767	+		ABZR87_RS07950	0.34	+0.1
1,690,767	+		ABZR87_RS07950	0.34	-0.5
1,690,767	+		ABZR87_RS07950	0.34	+1.1
1,690,778	+		ABZR87_RS07950	0.38	-0.8
1,690,779	-		ABZR87_RS07950	0.38	+0.5
1,690,779	-		ABZR87_RS07950	0.38	+0.6
1,690,779	-		ABZR87_RS07950	0.38	+0.3
1,690,779	-		ABZR87_RS07950	0.38	-0.9
1,690,779	-		ABZR87_RS07950	0.38	+0.2
1,690,779	-		ABZR87_RS07950	0.38	-1.2
1,690,811	+		ABZR87_RS07950	0.48	+0.1
1,690,812	-		ABZR87_RS07950	0.49	+0.3
1,691,050	+				-1.7
1,691,050	+				-1.3
1,691,051	-				+0.0
1,691,051	-				-0.6
1,691,155	+		ABZR87_RS07955	0.12	-2.1
1,691,156	-		ABZR87_RS07955	0.12	+1.5
1,691,156	-		ABZR87_RS07955	0.12	+1.6
1,691,288	-		ABZR87_RS07955	0.20	-2.2
1,691,450	+		ABZR87_RS07955	0.30	+3.1
1,691,451	-		ABZR87_RS07955	0.31	-0.5
1,691,465	+		ABZR87_RS07955	0.31	-0.3
1,691,465	+		ABZR87_RS07955	0.31	-0.5
1,691,465	+		ABZR87_RS07955	0.31	-0.4
1,691,465	+		ABZR87_RS07955	0.31	-2.8
1,691,465	+		ABZR87_RS07955	0.31	-0.6
1,691,466	-		ABZR87_RS07955	0.31	-0.0
1,691,678	+		ABZR87_RS07955	0.45	+0.1
1,691,679	-		ABZR87_RS07955	0.45	+1.4
1,691,714	+		ABZR87_RS07955	0.47	-2.5
1,691,715	-		ABZR87_RS07955	0.47	-0.7
1,691,827	-		ABZR87_RS07955	0.54	-2.8
1,691,999	+		ABZR87_RS07955	0.65	+1.4
1,691,999	+		ABZR87_RS07955	0.65	-0.1
1,692,000	-		ABZR87_RS07955	0.65	-1.4
1,692,000	-		ABZR87_RS07955	0.65	-1.0
1,692,000	-		ABZR87_RS07955	0.65	+0.3
1,692,000	-		ABZR87_RS07955	0.65	-1.1
1,692,001	+		ABZR87_RS07955	0.65	-0.9
1,692,001	+		ABZR87_RS07955	0.65	-0.5
1,692,001	+		ABZR87_RS07955	0.65	+0.1
1,692,001	+		ABZR87_RS07955	0.65	-0.3
1,692,001	+		ABZR87_RS07955	0.65	-2.8
1,692,001	+		ABZR87_RS07955	0.65	-0.1
1,692,001	+		ABZR87_RS07955	0.65	-1.1
1,692,001	+		ABZR87_RS07955	0.65	-1.2
1,692,001	+		ABZR87_RS07955	0.65	+0.3
1,692,001	+		ABZR87_RS07955	0.65	-1.1
1,692,001	+		ABZR87_RS07955	0.65	-1.9
1,692,002	-		ABZR87_RS07955	0.65	-1.5
1,692,002	-		ABZR87_RS07955	0.65	-2.3
1,692,002	-		ABZR87_RS07955	0.65	-0.1
1,692,002	-		ABZR87_RS07955	0.65	+0.6
1,692,002	-		ABZR87_RS07955	0.65	-0.7
1,692,002	-		ABZR87_RS07955	0.65	+0.7
1,692,139	+		ABZR87_RS07955	0.74	-1.7
1,692,139	+		ABZR87_RS07955	0.74	-0.3
1,692,140	-		ABZR87_RS07955	0.74	-1.7
1,692,142	+		ABZR87_RS07955	0.74	+4.5
1,692,142	+		ABZR87_RS07955	0.74	-1.1
1,692,142	+		ABZR87_RS07955	0.74	-0.1
1,692,142	+		ABZR87_RS07955	0.74	+0.0
1,692,142	+		ABZR87_RS07955	0.74	-0.7
1,692,142	+		ABZR87_RS07955	0.74	-0.5
1,692,142	+		ABZR87_RS07955	0.74	+0.7
1,692,142	+		ABZR87_RS07955	0.74	-0.9
1,692,142	+		ABZR87_RS07955	0.74	+0.4
1,692,142	+		ABZR87_RS07955	0.74	+0.5
1,692,143	-		ABZR87_RS07955	0.74	-1.0
1,692,143	-		ABZR87_RS07955	0.74	-1.4
1,692,143	-		ABZR87_RS07955	0.74	-0.3
1,692,143	-		ABZR87_RS07955	0.74	+0.5
1,692,146	+		ABZR87_RS07955	0.75	-1.3
1,692,146	+		ABZR87_RS07955	0.75	+0.7
1,692,146	+		ABZR87_RS07955	0.75	-0.1
1,692,146	+		ABZR87_RS07955	0.75	-0.7
1,692,146	+		ABZR87_RS07955	0.75	-0.9
1,692,147	-		ABZR87_RS07955	0.75	-0.6
1,692,147	-		ABZR87_RS07955	0.75	-1.5
1,692,147	-		ABZR87_RS07955	0.75	-0.8
1,692,147	-		ABZR87_RS07955	0.75	-1.1
1,692,147	-		ABZR87_RS07955	0.75	+2.7
1,692,271	+		ABZR87_RS07955	0.82	-0.1
1,692,272	-		ABZR87_RS07955	0.82	+0.7
1,692,304	+		ABZR87_RS07955	0.85	-0.5
1,692,304	+		ABZR87_RS07955	0.85	-1.1
1,692,304	+		ABZR87_RS07955	0.85	+0.4
1,692,304	+		ABZR87_RS07955	0.85	+0.7
1,692,305	-		ABZR87_RS07955	0.85	+0.0
1,692,305	-		ABZR87_RS07955	0.85	-1.5
1,692,305	-		ABZR87_RS07955	0.85	-1.6
1,692,305	-		ABZR87_RS07955	0.85	-1.5
1,692,305	-		ABZR87_RS07955	0.85	-0.2
1,692,599	+				-0.5
1,692,599	+				-0.9
1,692,599	+				-0.7
1,692,600	-				-1.8
1,692,668	+		ABZR87_RS07960	0.18	-0.7
1,692,668	+		ABZR87_RS07960	0.18	+0.2
1,692,668	+		ABZR87_RS07960	0.18	+1.1
1,692,669	-		ABZR87_RS07960	0.18	+0.9
1,692,669	-		ABZR87_RS07960	0.18	-0.2
1,692,669	-		ABZR87_RS07960	0.18	+0.2
1,692,669	-		ABZR87_RS07960	0.18	-1.2
1,692,669	-		ABZR87_RS07960	0.18	-2.4
1,692,669	-		ABZR87_RS07960	0.18	-0.2
1,692,669	-		ABZR87_RS07960	0.18	-2.5
1,692,669	-		ABZR87_RS07960	0.18	-0.7
1,692,669	-		ABZR87_RS07960	0.18	-2.0
1,692,669	-		ABZR87_RS07960	0.18	-0.3
1,692,820	-		ABZR87_RS07960	0.39	-1.0
1,692,821	+		ABZR87_RS07960	0.39	-1.0
1,692,821	+		ABZR87_RS07960	0.39	-0.1
1,692,821	+		ABZR87_RS07960	0.39	+0.6
1,692,821	+		ABZR87_RS07960	0.39	-1.3
1,692,821	+		ABZR87_RS07960	0.39	-1.9
1,692,821	+		ABZR87_RS07960	0.39	+2.1
1,692,821	+		ABZR87_RS07960	0.39	-0.1
1,692,821	+		ABZR87_RS07960	0.39	-0.1
1,692,821	+		ABZR87_RS07960	0.39	-1.0
1,692,821	+		ABZR87_RS07960	0.39	-0.4
1,692,821	+		ABZR87_RS07960	0.39	-0.0
1,692,821	+		ABZR87_RS07960	0.39	+0.5
1,692,821	+		ABZR87_RS07960	0.39	-0.2
1,692,821	+		ABZR87_RS07960	0.39	-1.4
1,692,821	+		ABZR87_RS07960	0.39	-1.5
1,692,821	+		ABZR87_RS07960	0.39	-0.4
1,692,822	-		ABZR87_RS07960	0.39	-1.1
1,692,822	-		ABZR87_RS07960	0.39	-0.0
1,692,822	-		ABZR87_RS07960	0.39	+1.7
1,692,822	-		ABZR87_RS07960	0.39	-0.5
1,692,822	-		ABZR87_RS07960	0.39	-0.9
1,692,822	-		ABZR87_RS07960	0.39	-1.4
1,692,822	-		ABZR87_RS07960	0.39	+0.9
1,692,953	+		ABZR87_RS07960	0.58	-0.5
1,692,953	+		ABZR87_RS07960	0.58	-1.2
1,692,953	+		ABZR87_RS07960	0.58	-0.3
1,692,953	+		ABZR87_RS07960	0.58	-0.4
1,692,953	+		ABZR87_RS07960	0.58	-0.0
1,692,953	+		ABZR87_RS07960	0.58	-1.5
1,692,953	+		ABZR87_RS07960	0.58	+0.6
1,692,954	-		ABZR87_RS07960	0.58	-0.2
1,692,954	-		ABZR87_RS07960	0.58	-0.9
1,692,954	-		ABZR87_RS07960	0.58	-0.5
1,692,954	-		ABZR87_RS07960	0.58	-0.0
1,692,954	-		ABZR87_RS07960	0.58	-0.0
1,692,954	-		ABZR87_RS07960	0.58	-0.4
1,692,954	-		ABZR87_RS07960	0.58	-0.6
1,693,077	+		ABZR87_RS07960	0.75	-0.1
1,693,078	-		ABZR87_RS07960	0.75	-0.8
1,693,078	-		ABZR87_RS07960	0.75	-1.2
1,693,112	+		ABZR87_RS07960	0.80	-0.8
1,693,112	+		ABZR87_RS07960	0.80	-0.5
1,693,112	+		ABZR87_RS07960	0.80	-0.5
1,693,112	+		ABZR87_RS07960	0.80	-0.9
1,693,112	+		ABZR87_RS07960	0.80	+0.6
1,693,112	+		ABZR87_RS07960	0.80	-1.5
1,693,112	+		ABZR87_RS07960	0.80	-0.2
1,693,112	+		ABZR87_RS07960	0.80	+0.3
1,693,112	+		ABZR87_RS07960	0.80	-0.6
1,693,112	+		ABZR87_RS07960	0.80	-0.4
1,693,112	+		ABZR87_RS07960	0.80	-0.3
1,693,112	+		ABZR87_RS07960	0.80	-1.1
1,693,112	+		ABZR87_RS07960	0.80	-1.4
1,693,113	-		ABZR87_RS07960	0.80	-1.4
1,693,113	-		ABZR87_RS07960	0.80	-1.4
1,693,113	-		ABZR87_RS07960	0.80	-1.1
1,693,181	+		ABZR87_RS07960	0.90	+0.4
1,693,181	+		ABZR87_RS07960	0.90	-2.0
1,693,181	+		ABZR87_RS07960	0.90	-1.2
1,693,181	+		ABZR87_RS07960	0.90	-0.7
1,693,182	-		ABZR87_RS07960	0.90	-1.3
1,693,182	-		ABZR87_RS07960	0.90	+0.7
1,693,304	+				-1.2
1,693,304	+				-1.1
1,693,305	-				-0.1
1,693,366	+				+0.5
1,693,387	+				-0.7
1,693,387	+				-0.0
1,693,387	+				-0.9
1,693,387	+				-0.5
1,693,388	-				-0.5
1,693,388	-				+0.1
1,693,388	-				+2.1
1,693,492	+				+0.4
1,693,492	+				-2.6
1,693,492	+				+0.3
1,693,492	+				-0.9
1,693,493	-				-0.6
1,693,493	-				+0.4
1,693,493	-				+0.4
1,693,493	-				+0.7
1,693,493	-				-1.7
1,693,494	+				+0.4
1,693,494	+				-0.4
1,693,494	+				+1.3
1,693,494	+				-1.4
1,693,495	-				+1.1
1,693,495	-				-0.6
1,693,495	-				-0.1
1,693,531	+				-0.4
1,693,531	+				+1.1
1,693,531	+				+1.1