Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06950

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS06945 and ABZR87_RS06950 are separated by 60 nucleotidesABZR87_RS06950 and ABZR87_RS06955 overlap by 1 nucleotides ABZR87_RS06945: ABZR87_RS06945 - signal recognition particle-docking protein FtsY, at 1,468,525 to 1,469,721 _RS06945 ABZR87_RS06950: ABZR87_RS06950 - pitrilysin family protein, at 1,469,782 to 1,471,278 _RS06950 ABZR87_RS06955: ABZR87_RS06955 - pitrilysin family protein, at 1,471,278 to 1,472,630 _RS06955 Position (kb) 1469 1470 1471 1472Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 1469.725 kb on - strandat 1469.737 kb on - strandat 1469.737 kb on - strandat 1469.748 kb on - strandat 1469.768 kb on - strandat 1469.781 kb on + strandat 1469.782 kb on - strandat 1469.971 kb on + strand, within ABZR87_RS06950at 1469.972 kb on - strand, within ABZR87_RS06950at 1469.972 kb on - strand, within ABZR87_RS06950at 1469.972 kb on - strand, within ABZR87_RS06950at 1469.972 kb on - strand, within ABZR87_RS06950at 1470.046 kb on + strand, within ABZR87_RS06950at 1470.214 kb on + strand, within ABZR87_RS06950at 1470.215 kb on - strand, within ABZR87_RS06950at 1470.215 kb on - strand, within ABZR87_RS06950at 1470.215 kb on - strand, within ABZR87_RS06950at 1470.376 kb on + strand, within ABZR87_RS06950at 1470.376 kb on + strand, within ABZR87_RS06950at 1470.376 kb on + strand, within ABZR87_RS06950at 1470.377 kb on - strand, within ABZR87_RS06950at 1470.377 kb on - strand, within ABZR87_RS06950at 1470.377 kb on - strand, within ABZR87_RS06950at 1470.377 kb on - strand, within ABZR87_RS06950at 1470.484 kb on + strand, within ABZR87_RS06950at 1470.484 kb on + strand, within ABZR87_RS06950at 1470.485 kb on - strand, within ABZR87_RS06950at 1470.496 kb on + strand, within ABZR87_RS06950at 1470.497 kb on - strand, within ABZR87_RS06950at 1470.497 kb on - strand, within ABZR87_RS06950at 1470.574 kb on + strand, within ABZR87_RS06950at 1470.574 kb on + strand, within ABZR87_RS06950at 1470.574 kb on + strand, within ABZR87_RS06950at 1470.574 kb on + strand, within ABZR87_RS06950at 1470.575 kb on - strand, within ABZR87_RS06950at 1470.575 kb on - strand, within ABZR87_RS06950at 1470.611 kb on - strand, within ABZR87_RS06950at 1470.679 kb on + strand, within ABZR87_RS06950at 1470.679 kb on + strand, within ABZR87_RS06950at 1470.680 kb on - strand, within ABZR87_RS06950at 1470.739 kb on + strand, within ABZR87_RS06950at 1470.739 kb on + strand, within ABZR87_RS06950at 1470.740 kb on - strand, within ABZR87_RS06950at 1470.775 kb on + strand, within ABZR87_RS06950at 1470.775 kb on + strand, within ABZR87_RS06950at 1470.776 kb on - strand, within ABZR87_RS06950at 1470.776 kb on - strand, within ABZR87_RS06950at 1470.847 kb on + strand, within ABZR87_RS06950at 1471.024 kb on + strand, within ABZR87_RS06950at 1471.024 kb on + strand, within ABZR87_RS06950at 1471.024 kb on + strand, within ABZR87_RS06950at 1471.025 kb on - strand, within ABZR87_RS06950at 1471.165 kb on + strandat 1471.165 kb on + strandat 1471.165 kb on + strandat 1471.165 kb on + strandat 1471.166 kb on - strandat 1471.166 kb on - strandat 1471.166 kb on - strandat 1471.166 kb on - strandat 1471.436 kb on - strand, within ABZR87_RS06955at 1471.538 kb on + strand, within ABZR87_RS06955at 1471.821 kb on + strand, within ABZR87_RS06955at 1471.821 kb on + strand, within ABZR87_RS06955at 1471.822 kb on - strand, within ABZR87_RS06955at 1471.897 kb on - strand, within ABZR87_RS06955at 1471.897 kb on - strand, within ABZR87_RS06955at 1471.899 kb on + strand, within ABZR87_RS06955at 1471.899 kb on + strand, within ABZR87_RS06955at 1471.900 kb on - strand, within ABZR87_RS06955at 1471.900 kb on - strand, within ABZR87_RS06955at 1471.911 kb on + strand, within ABZR87_RS06955at 1471.911 kb on + strand, within ABZR87_RS06955at 1471.912 kb on - strand, within ABZR87_RS06955at 1471.912 kb on - strand, within ABZR87_RS06955at 1471.912 kb on - strand, within ABZR87_RS06955at 1471.989 kb on - strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.142 kb on + strand, within ABZR87_RS06955at 1472.143 kb on - strand, within ABZR87_RS06955at 1472.166 kb on + strand, within ABZR87_RS06955at 1472.166 kb on + strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.167 kb on - strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.235 kb on + strand, within ABZR87_RS06955at 1472.236 kb on - strand, within ABZR87_RS06955at 1472.236 kb on - strand, within ABZR87_RS06955at 1472.236 kb on - strand, within ABZR87_RS06955at 1472.250 kb on + strand, within ABZR87_RS06955at 1472.250 kb on + strand, within ABZR87_RS06955at 1472.250 kb on + strand, within ABZR87_RS06955at 1472.251 kb on - strand, within ABZR87_RS06955at 1472.251 kb on - strand, within ABZR87_RS06955

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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1,469,725 - -0.8
1,469,737 - +0.2
1,469,737 - -0.4
1,469,748 - -0.1
1,469,768 - -0.1
1,469,781 + -0.2
1,469,782 - -2.0
1,469,971 + ABZR87_RS06950 0.13 +0.3
1,469,972 - ABZR87_RS06950 0.13 -0.8
1,469,972 - ABZR87_RS06950 0.13 +0.7
1,469,972 - ABZR87_RS06950 0.13 -0.3
1,469,972 - ABZR87_RS06950 0.13 -0.9
1,470,046 + ABZR87_RS06950 0.18 -2.0
1,470,214 + ABZR87_RS06950 0.29 -1.2
1,470,215 - ABZR87_RS06950 0.29 -0.3
1,470,215 - ABZR87_RS06950 0.29 +0.3
1,470,215 - ABZR87_RS06950 0.29 -0.8
1,470,376 + ABZR87_RS06950 0.40 +0.3
1,470,376 + ABZR87_RS06950 0.40 -2.2
1,470,376 + ABZR87_RS06950 0.40 -0.9
1,470,377 - ABZR87_RS06950 0.40 -0.4
1,470,377 - ABZR87_RS06950 0.40 +0.5
1,470,377 - ABZR87_RS06950 0.40 -2.1
1,470,377 - ABZR87_RS06950 0.40 +0.8
1,470,484 + ABZR87_RS06950 0.47 +0.7
1,470,484 + ABZR87_RS06950 0.47 +1.0
1,470,485 - ABZR87_RS06950 0.47 -1.1
1,470,496 + ABZR87_RS06950 0.48 -1.0
1,470,497 - ABZR87_RS06950 0.48 +0.8
1,470,497 - ABZR87_RS06950 0.48 -1.1
1,470,574 + ABZR87_RS06950 0.53 -0.9
1,470,574 + ABZR87_RS06950 0.53 -0.1
1,470,574 + ABZR87_RS06950 0.53 +0.1
1,470,574 + ABZR87_RS06950 0.53 +0.5
1,470,575 - ABZR87_RS06950 0.53 -0.7
1,470,575 - ABZR87_RS06950 0.53 -0.3
1,470,611 - ABZR87_RS06950 0.55 -1.4
1,470,679 + ABZR87_RS06950 0.60 -0.1
1,470,679 + ABZR87_RS06950 0.60 -2.2
1,470,680 - ABZR87_RS06950 0.60 -0.3
1,470,739 + ABZR87_RS06950 0.64 +0.9
1,470,739 + ABZR87_RS06950 0.64 -1.4
1,470,740 - ABZR87_RS06950 0.64 -0.2
1,470,775 + ABZR87_RS06950 0.66 -1.0
1,470,775 + ABZR87_RS06950 0.66 +0.7
1,470,776 - ABZR87_RS06950 0.66 +0.7
1,470,776 - ABZR87_RS06950 0.66 -0.9
1,470,847 + ABZR87_RS06950 0.71 -1.7
1,471,024 + ABZR87_RS06950 0.83 +0.8
1,471,024 + ABZR87_RS06950 0.83 -1.0
1,471,024 + ABZR87_RS06950 0.83 +0.1
1,471,025 - ABZR87_RS06950 0.83 -0.9
1,471,165 + -1.2
1,471,165 + -1.0
1,471,165 + -1.4
1,471,165 + -0.4
1,471,166 - -1.7
1,471,166 - +0.5
1,471,166 - -1.4
1,471,166 - +0.3
1,471,436 - ABZR87_RS06955 0.12 -0.4
1,471,538 + ABZR87_RS06955 0.19 +0.3
1,471,821 + ABZR87_RS06955 0.40 -2.6
1,471,821 + ABZR87_RS06955 0.40 -2.0
1,471,822 - ABZR87_RS06955 0.40 -0.9
1,471,897 - ABZR87_RS06955 0.46 +0.2
1,471,897 - ABZR87_RS06955 0.46 -0.2
1,471,899 + ABZR87_RS06955 0.46 +0.8
1,471,899 + ABZR87_RS06955 0.46 -4.1
1,471,900 - ABZR87_RS06955 0.46 -1.1
1,471,900 - ABZR87_RS06955 0.46 -0.5
1,471,911 + ABZR87_RS06955 0.47 -0.0
1,471,911 + ABZR87_RS06955 0.47 -0.4
1,471,912 - ABZR87_RS06955 0.47 -0.2
1,471,912 - ABZR87_RS06955 0.47 -2.1
1,471,912 - ABZR87_RS06955 0.47 +0.6
1,471,989 - ABZR87_RS06955 0.53 +0.5
1,472,142 + ABZR87_RS06955 0.64 -1.0
1,472,142 + ABZR87_RS06955 0.64 -0.3
1,472,142 + ABZR87_RS06955 0.64 -0.4
1,472,142 + ABZR87_RS06955 0.64 -1.1
1,472,142 + ABZR87_RS06955 0.64 -1.8
1,472,143 - ABZR87_RS06955 0.64 -1.6
1,472,166 + ABZR87_RS06955 0.66 +0.7
1,472,166 + ABZR87_RS06955 0.66 -0.3
1,472,167 - ABZR87_RS06955 0.66 -0.9
1,472,167 - ABZR87_RS06955 0.66 -1.3
1,472,167 - ABZR87_RS06955 0.66 -0.1
1,472,167 - ABZR87_RS06955 0.66 -0.2
1,472,167 - ABZR87_RS06955 0.66 -0.1
1,472,235 + ABZR87_RS06955 0.71 -1.2
1,472,235 + ABZR87_RS06955 0.71 -0.6
1,472,235 + ABZR87_RS06955 0.71 +4.1
1,472,235 + ABZR87_RS06955 0.71 -1.3
1,472,235 + ABZR87_RS06955 0.71 -1.7
1,472,236 - ABZR87_RS06955 0.71 -0.9
1,472,236 - ABZR87_RS06955 0.71 +0.4
1,472,236 - ABZR87_RS06955 0.71 +0.3
1,472,250 + ABZR87_RS06955 0.72 +1.3
1,472,250 + ABZR87_RS06955 0.72 -0.7
1,472,250 + ABZR87_RS06955 0.72 -0.9
1,472,251 - ABZR87_RS06955 0.72 +1.8
1,472,251 - ABZR87_RS06955 0.72 +0.8

Or see this region's nucleotide sequence