Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS06840

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
1,446,869	+		ABZR87_RS06830	0.68	-0.4
1,446,870	-		ABZR87_RS06830	0.68	-0.6
1,446,878	+		ABZR87_RS06830	0.69	-0.6
1,446,878	+		ABZR87_RS06830	0.69	-0.8
1,446,879	-		ABZR87_RS06830	0.69	-2.2
1,447,008	+		ABZR87_RS06830	0.86	-0.4
1,447,008	+		ABZR87_RS06830	0.86	+0.3
1,447,008	+		ABZR87_RS06830	0.86	-0.9
1,447,009	-		ABZR87_RS06830	0.86	-0.0
1,447,009	-		ABZR87_RS06830	0.86	-1.2
1,447,009	-		ABZR87_RS06830	0.86	-1.4
1,447,009	-		ABZR87_RS06830	0.86	+0.0
1,447,009	-		ABZR87_RS06830	0.86	-1.7
1,447,009	-		ABZR87_RS06830	0.86	-0.7
1,447,068	+				-0.8
1,447,140	+				+0.1
1,447,140	+				-1.3
1,447,141	-				-0.2
1,447,141	-				+0.2
1,447,141	-				+0.3
1,447,313	-		ABZR87_RS06835	0.22	-0.1
1,447,313	-		ABZR87_RS06835	0.22	-1.4
1,447,321	+		ABZR87_RS06835	0.23	+0.8
1,447,321	+		ABZR87_RS06835	0.23	+0.3
1,447,321	+		ABZR87_RS06835	0.23	+2.4
1,447,321	+		ABZR87_RS06835	0.23	-1.7
1,447,321	+		ABZR87_RS06835	0.23	-0.6
1,447,322	-		ABZR87_RS06835	0.23	+0.0
1,447,322	-		ABZR87_RS06835	0.23	-2.3
1,447,322	-		ABZR87_RS06835	0.23	-1.7
1,447,322	-		ABZR87_RS06835	0.23	+0.5
1,447,322	-		ABZR87_RS06835	0.23	-1.2
1,447,324	+		ABZR87_RS06835	0.23	-0.2
1,447,324	+		ABZR87_RS06835	0.23	-2.0
1,447,324	+		ABZR87_RS06835	0.23	-0.9
1,447,325	-		ABZR87_RS06835	0.23	+2.8
1,447,325	-		ABZR87_RS06835	0.23	-1.6
1,447,325	-		ABZR87_RS06835	0.23	-1.6
1,447,357	+		ABZR87_RS06835	0.28	+0.2
1,447,357	+		ABZR87_RS06835	0.28	+0.2
1,447,358	-		ABZR87_RS06835	0.28	-1.0
1,447,358	-		ABZR87_RS06835	0.28	-1.1
1,447,621	+		ABZR87_RS06835	0.68	+0.6
1,447,621	+		ABZR87_RS06835	0.68	+0.8
1,447,621	+		ABZR87_RS06835	0.68	+0.5
1,447,621	+		ABZR87_RS06835	0.68	-0.6
1,447,622	-		ABZR87_RS06835	0.69	-1.1
1,447,622	-		ABZR87_RS06835	0.69	-2.3
1,447,634	-		ABZR87_RS06835	0.70	-2.3
1,447,810	+				-0.4
1,447,811	-				-0.0
1,447,825	+				+1.0
1,447,885	+				-1.1
1,447,885	+				-3.8
1,447,885	+				-1.3
1,447,885	+				-1.0
1,447,885	+				-0.6
1,447,885	+				-1.0
1,447,885	+				-1.3
1,447,885	+				+0.1
1,447,885	+				+0.3
1,447,885	+				-1.1
1,447,885	+				-3.0
1,447,886	-				-1.4
1,447,886	-				-2.7
1,447,886	-				-2.3
1,447,886	-				-1.2
1,447,886	-				-1.2
1,447,886	-				-3.4
1,447,915	+				-1.4
1,447,915	+				-0.9
1,448,137	+		ABZR87_RS06840	0.28	-0.1
1,448,138	-		ABZR87_RS06840	0.28	-2.1
1,448,224	+		ABZR87_RS06840	0.36	-1.1
1,448,225	-		ABZR87_RS06840	0.36	+1.2
1,448,225	-		ABZR87_RS06840	0.36	-1.6
1,448,249	+		ABZR87_RS06840	0.38	-2.8
1,448,249	+		ABZR87_RS06840	0.38	-0.2
1,448,249	+		ABZR87_RS06840	0.38	+1.2
1,448,249	+		ABZR87_RS06840	0.38	-1.4
1,448,249	+		ABZR87_RS06840	0.38	-1.8
1,448,250	-		ABZR87_RS06840	0.38	-2.0
1,448,250	-		ABZR87_RS06840	0.38	-1.3
1,448,250	-		ABZR87_RS06840	0.38	+0.2
1,448,250	-		ABZR87_RS06840	0.38	-2.5
1,448,250	-		ABZR87_RS06840	0.38	-0.7
1,448,250	-		ABZR87_RS06840	0.38	-3.1
1,448,250	-		ABZR87_RS06840	0.38	+0.6
1,448,485	+		ABZR87_RS06840	0.60	-1.8
1,448,485	+		ABZR87_RS06840	0.60	-0.9
1,448,485	+		ABZR87_RS06840	0.60	-0.2
1,448,486	-		ABZR87_RS06840	0.60	-1.8
1,448,486	-		ABZR87_RS06840	0.60	-2.4
1,448,486	-		ABZR87_RS06840	0.60	-0.1
1,448,486	-		ABZR87_RS06840	0.60	+0.8
1,448,486	-		ABZR87_RS06840	0.60	-1.8
1,448,671	+		ABZR87_RS06840	0.77	-1.3
1,448,672	-		ABZR87_RS06840	0.77	-3.2
1,448,672	-		ABZR87_RS06840	0.77	-0.8
1,448,672	-		ABZR87_RS06840	0.77	+0.1
1,448,863	+				-1.3
1,448,948	+				+0.6
1,448,948	+				-2.1
1,448,949	-				-1.3
1,448,949	-				-1.5
1,449,009	+				-1.0
1,449,204	-		ABZR87_RS06845	0.28	-2.3
1,449,351	+		ABZR87_RS06845	0.43	-0.9
1,449,363	+		ABZR87_RS06845	0.45	+0.8
1,449,363	+		ABZR87_RS06845	0.45	-2.8
1,449,363	+		ABZR87_RS06845	0.45	-2.9
1,449,363	+		ABZR87_RS06845	0.45	-1.9
1,449,363	+		ABZR87_RS06845	0.45	-3.1
1,449,503	+		ABZR87_RS06845	0.59	-2.2
1,449,504	-		ABZR87_RS06845	0.60	-2.9
1,449,538	+		ABZR87_RS06845	0.63	-2.7
1,449,538	+		ABZR87_RS06845	0.63	-2.9
1,449,538	+		ABZR87_RS06845	0.63	-0.9
1,449,538	+		ABZR87_RS06845	0.63	-1.3
1,449,540	+		ABZR87_RS06845	0.63	-0.2
1,449,556	-		ABZR87_RS06845	0.65	-0.5
1,449,556	-		ABZR87_RS06845	0.65	-0.4
1,449,571	+		ABZR87_RS06845	0.67	-0.9
1,449,572	-		ABZR87_RS06845	0.67	-1.5
1,449,572	-		ABZR87_RS06845	0.67	-1.0
1,449,603	+		ABZR87_RS06845	0.70	-1.1
1,449,603	+		ABZR87_RS06845	0.70	-1.0
1,449,627	+		ABZR87_RS06845	0.73	-1.4
1,449,627	+		ABZR87_RS06845	0.73	-2.4
1,449,628	-		ABZR87_RS06845	0.73	-2.6
1,449,628	-		ABZR87_RS06845	0.73	-1.5
1,449,670	-		ABZR87_RS06845	0.77	-3.5
1,449,684	+		ABZR87_RS06845	0.79	-0.3
1,449,685	-		ABZR87_RS06845	0.79	+0.2
1,449,685	-		ABZR87_RS06845	0.79	-2.3
1,449,686	+		ABZR87_RS06845	0.79	-3.4
1,449,687	-		ABZR87_RS06845	0.79	-1.5
1,449,687	-		ABZR87_RS06845	0.79	-2.2
1,449,690	+		ABZR87_RS06845	0.79	-0.8
1,449,690	+		ABZR87_RS06845	0.79	-1.0
1,449,690	+		ABZR87_RS06845	0.79	-2.8
1,449,690	+		ABZR87_RS06845	0.79	+0.6
1,449,691	-		ABZR87_RS06845	0.79	-1.6
1,449,691	-		ABZR87_RS06845	0.79	-1.5
1,449,733	-		ABZR87_RS06845	0.84	-0.8
1,449,733	-		ABZR87_RS06845	0.84	-1.2
1,449,747	+		ABZR87_RS06845	0.85	-2.6
1,449,748	-		ABZR87_RS06845	0.85	-3.1
1,449,748	-		ABZR87_RS06845	0.85	-0.4
1,449,757	-		ABZR87_RS06845	0.86	-1.8
1,449,801	+				-1.3
1,449,801	+				-1.3
1,449,801	+				-0.6
1,449,802	-				-0.5
1,449,840	+				+2.8
1,449,840	+				-0.6
1,449,841	-				-2.7
1,449,841	-				-0.3