Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS04040

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS04035 and ABZR87_RS04040 are separated by 172 nucleotidesABZR87_RS04040 and ABZR87_RS04045 are separated by 13 nucleotides ABZR87_RS04035: ABZR87_RS04035 - phosphate ABC transporter substrate-binding protein PstS, at 846,585 to 847,646 _RS04035 ABZR87_RS04040: ABZR87_RS04040 - DUF3562 domain-containing protein, at 847,819 to 848,022 _RS04040 ABZR87_RS04045: ABZR87_RS04045 - alpha/beta hydrolase, at 848,036 to 848,983 _RS04045 Position (kb) 847 848 849Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 847.071 kb on + strand, within ABZR87_RS04035at 847.071 kb on + strand, within ABZR87_RS04035at 847.071 kb on + strand, within ABZR87_RS04035at 847.071 kb on + strand, within ABZR87_RS04035at 847.071 kb on + strand, within ABZR87_RS04035at 847.071 kb on + strand, within ABZR87_RS04035at 847.071 kb on + strand, within ABZR87_RS04035at 847.072 kb on - strand, within ABZR87_RS04035at 847.072 kb on - strand, within ABZR87_RS04035at 847.072 kb on - strand, within ABZR87_RS04035at 847.072 kb on - strand, within ABZR87_RS04035at 847.072 kb on - strand, within ABZR87_RS04035at 847.086 kb on + strand, within ABZR87_RS04035at 847.087 kb on - strand, within ABZR87_RS04035at 847.123 kb on - strand, within ABZR87_RS04035at 847.123 kb on - strand, within ABZR87_RS04035at 847.224 kb on + strand, within ABZR87_RS04035at 847.224 kb on + strand, within ABZR87_RS04035at 847.224 kb on + strand, within ABZR87_RS04035at 847.224 kb on + strand, within ABZR87_RS04035at 847.225 kb on - strand, within ABZR87_RS04035at 847.225 kb on - strand, within ABZR87_RS04035at 847.225 kb on - strand, within ABZR87_RS04035at 847.233 kb on + strand, within ABZR87_RS04035at 847.233 kb on + strand, within ABZR87_RS04035at 847.233 kb on + strand, within ABZR87_RS04035at 847.233 kb on + strand, within ABZR87_RS04035at 847.234 kb on - strand, within ABZR87_RS04035at 847.234 kb on - strand, within ABZR87_RS04035at 847.239 kb on + strand, within ABZR87_RS04035at 847.239 kb on + strand, within ABZR87_RS04035at 847.239 kb on + strand, within ABZR87_RS04035at 847.239 kb on + strand, within ABZR87_RS04035at 847.239 kb on + strand, within ABZR87_RS04035at 847.239 kb on + strand, within ABZR87_RS04035at 847.239 kb on + strand, within ABZR87_RS04035at 847.239 kb on + strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.240 kb on - strand, within ABZR87_RS04035at 847.494 kb on + strand, within ABZR87_RS04035at 847.495 kb on - strand, within ABZR87_RS04035at 847.567 kb on - strandat 847.593 kb on - strandat 847.752 kb on + strandat 847.752 kb on + strandat 847.752 kb on + strandat 847.752 kb on + strandat 847.752 kb on + strandat 847.752 kb on + strandat 847.752 kb on + strandat 847.752 kb on + strandat 847.753 kb on - strandat 847.753 kb on - strandat 847.753 kb on - strandat 847.753 kb on - strandat 847.754 kb on + strandat 847.754 kb on + strandat 847.755 kb on - strandat 847.755 kb on - strandat 847.755 kb on - strandat 847.755 kb on - strandat 847.825 kb on - strandat 847.906 kb on + strand, within ABZR87_RS04040at 847.906 kb on + strand, within ABZR87_RS04040at 847.906 kb on + strand, within ABZR87_RS04040at 847.906 kb on + strand, within ABZR87_RS04040at 847.906 kb on + strand, within ABZR87_RS04040at 847.906 kb on + strand, within ABZR87_RS04040at 847.907 kb on - strand, within ABZR87_RS04040at 847.907 kb on - strand, within ABZR87_RS04040at 847.907 kb on - strand, within ABZR87_RS04040at 847.907 kb on - strand, within ABZR87_RS04040at 847.907 kb on - strand, within ABZR87_RS04040at 847.954 kb on + strand, within ABZR87_RS04040at 847.954 kb on + strand, within ABZR87_RS04040at 847.955 kb on - strand, within ABZR87_RS04040at 847.955 kb on - strand, within ABZR87_RS04040at 848.037 kb on + strandat 848.037 kb on + strandat 848.038 kb on - strandat 848.038 kb on - strandat 848.116 kb on + strandat 848.117 kb on - strandat 848.185 kb on - strand, within ABZR87_RS04045at 848.185 kb on - strand, within ABZR87_RS04045at 848.185 kb on - strand, within ABZR87_RS04045at 848.185 kb on - strand, within ABZR87_RS04045at 848.193 kb on + strand, within ABZR87_RS04045at 848.193 kb on + strand, within ABZR87_RS04045at 848.194 kb on - strand, within ABZR87_RS04045at 848.257 kb on + strand, within ABZR87_RS04045at 848.258 kb on - strand, within ABZR87_RS04045at 848.259 kb on + strand, within ABZR87_RS04045at 848.259 kb on + strand, within ABZR87_RS04045at 848.259 kb on + strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.260 kb on - strand, within ABZR87_RS04045at 848.337 kb on + strand, within ABZR87_RS04045at 848.337 kb on + strand, within ABZR87_RS04045at 848.337 kb on + strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.338 kb on - strand, within ABZR87_RS04045at 848.349 kb on + strand, within ABZR87_RS04045at 848.349 kb on + strand, within ABZR87_RS04045at 848.349 kb on + strand, within ABZR87_RS04045at 848.349 kb on + strand, within ABZR87_RS04045at 848.350 kb on - strand, within ABZR87_RS04045at 848.350 kb on - strand, within ABZR87_RS04045at 848.400 kb on + strand, within ABZR87_RS04045at 848.401 kb on - strand, within ABZR87_RS04045at 848.401 kb on - strand, within ABZR87_RS04045at 848.437 kb on - strand, within ABZR87_RS04045at 848.574 kb on + strand, within ABZR87_RS04045at 848.575 kb on - strand, within ABZR87_RS04045at 848.575 kb on - strand, within ABZR87_RS04045at 848.665 kb on + strand, within ABZR87_RS04045at 848.666 kb on - strand, within ABZR87_RS04045at 848.952 kb on + strandat 848.952 kb on + strandat 848.952 kb on + strandat 848.953 kb on - strandat 848.953 kb on - strandat 848.953 kb on - strandat 848.988 kb on + strandat 848.988 kb on + strandat 848.988 kb on + strandat 848.988 kb on + strandat 848.988 kb on + strandat 848.989 kb on - strandat 848.989 kb on - strandat 848.989 kb on - strandat 848.989 kb on - strandat 849.016 kb on + strandat 849.016 kb on + strandat 849.017 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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847,071 + ABZR87_RS04035 0.46 -0.6
847,071 + ABZR87_RS04035 0.46 +1.4
847,071 + ABZR87_RS04035 0.46 +0.2
847,071 + ABZR87_RS04035 0.46 -0.1
847,071 + ABZR87_RS04035 0.46 +0.0
847,071 + ABZR87_RS04035 0.46 -1.9
847,071 + ABZR87_RS04035 0.46 -0.2
847,072 - ABZR87_RS04035 0.46 +2.1
847,072 - ABZR87_RS04035 0.46 -0.7
847,072 - ABZR87_RS04035 0.46 +0.2
847,072 - ABZR87_RS04035 0.46 -1.7
847,072 - ABZR87_RS04035 0.46 -1.7
847,086 + ABZR87_RS04035 0.47 -0.2
847,087 - ABZR87_RS04035 0.47 -0.2
847,123 - ABZR87_RS04035 0.51 -0.1
847,123 - ABZR87_RS04035 0.51 +0.3
847,224 + ABZR87_RS04035 0.60 -0.9
847,224 + ABZR87_RS04035 0.60 -2.5
847,224 + ABZR87_RS04035 0.60 +0.2
847,224 + ABZR87_RS04035 0.60 -0.3
847,225 - ABZR87_RS04035 0.60 +0.2
847,225 - ABZR87_RS04035 0.60 +0.1
847,225 - ABZR87_RS04035 0.60 +0.4
847,233 + ABZR87_RS04035 0.61 +0.9
847,233 + ABZR87_RS04035 0.61 +0.8
847,233 + ABZR87_RS04035 0.61 +0.2
847,233 + ABZR87_RS04035 0.61 -0.9
847,234 - ABZR87_RS04035 0.61 +0.9
847,234 - ABZR87_RS04035 0.61 +0.2
847,239 + ABZR87_RS04035 0.62 -1.5
847,239 + ABZR87_RS04035 0.62 +2.1
847,239 + ABZR87_RS04035 0.62 +0.2
847,239 + ABZR87_RS04035 0.62 -0.2
847,239 + ABZR87_RS04035 0.62 +0.6
847,239 + ABZR87_RS04035 0.62 +0.9
847,239 + ABZR87_RS04035 0.62 +1.3
847,239 + ABZR87_RS04035 0.62 -0.8
847,240 - ABZR87_RS04035 0.62 -0.9
847,240 - ABZR87_RS04035 0.62 -1.3
847,240 - ABZR87_RS04035 0.62 +0.5
847,240 - ABZR87_RS04035 0.62 +1.4
847,240 - ABZR87_RS04035 0.62 +1.7
847,240 - ABZR87_RS04035 0.62 -0.2
847,240 - ABZR87_RS04035 0.62 -1.5
847,240 - ABZR87_RS04035 0.62 -0.3
847,240 - ABZR87_RS04035 0.62 +0.4
847,240 - ABZR87_RS04035 0.62 +0.9
847,240 - ABZR87_RS04035 0.62 +0.6
847,494 + ABZR87_RS04035 0.86 +0.1
847,495 - ABZR87_RS04035 0.86 +1.3
847,567 - -1.4
847,593 - +0.0
847,752 + -0.7
847,752 + -0.5
847,752 + -0.5
847,752 + -0.2
847,752 + +0.4
847,752 + -0.5
847,752 + +0.4
847,752 + +0.0
847,753 - -0.4
847,753 - -0.2
847,753 - +1.2
847,753 - -1.1
847,754 + -0.9
847,754 + -2.1
847,755 - -0.4
847,755 - -0.1
847,755 - +0.1
847,755 - +0.3
847,825 - +0.4
847,906 + ABZR87_RS04040 0.43 -0.1
847,906 + ABZR87_RS04040 0.43 +0.5
847,906 + ABZR87_RS04040 0.43 -0.1
847,906 + ABZR87_RS04040 0.43 +0.6
847,906 + ABZR87_RS04040 0.43 +1.8
847,906 + ABZR87_RS04040 0.43 +0.0
847,907 - ABZR87_RS04040 0.43 -2.4
847,907 - ABZR87_RS04040 0.43 +3.3
847,907 - ABZR87_RS04040 0.43 +1.7
847,907 - ABZR87_RS04040 0.43 -0.0
847,907 - ABZR87_RS04040 0.43 +1.2
847,954 + ABZR87_RS04040 0.66 -0.2
847,954 + ABZR87_RS04040 0.66 +0.5
847,955 - ABZR87_RS04040 0.67 -0.4
847,955 - ABZR87_RS04040 0.67 -2.7
848,037 + -0.2
848,037 + -0.5
848,038 - -1.4
848,038 - -0.8
848,116 + -0.9
848,117 - +0.0
848,185 - ABZR87_RS04045 0.16 +5.1
848,185 - ABZR87_RS04045 0.16 -0.6
848,185 - ABZR87_RS04045 0.16 -2.3
848,185 - ABZR87_RS04045 0.16 -0.7
848,193 + ABZR87_RS04045 0.17 -0.3
848,193 + ABZR87_RS04045 0.17 +0.2
848,194 - ABZR87_RS04045 0.17 -0.9
848,257 + ABZR87_RS04045 0.23 -0.7
848,258 - ABZR87_RS04045 0.23 +0.4
848,259 + ABZR87_RS04045 0.24 -0.8
848,259 + ABZR87_RS04045 0.24 +0.1
848,259 + ABZR87_RS04045 0.24 -1.6
848,260 - ABZR87_RS04045 0.24 -1.7
848,260 - ABZR87_RS04045 0.24 +0.7
848,260 - ABZR87_RS04045 0.24 +1.1
848,260 - ABZR87_RS04045 0.24 -0.4
848,260 - ABZR87_RS04045 0.24 +0.5
848,337 + ABZR87_RS04045 0.32 -0.1
848,337 + ABZR87_RS04045 0.32 +1.1
848,337 + ABZR87_RS04045 0.32 +0.2
848,338 - ABZR87_RS04045 0.32 -3.0
848,338 - ABZR87_RS04045 0.32 -1.0
848,338 - ABZR87_RS04045 0.32 +0.3
848,338 - ABZR87_RS04045 0.32 +0.2
848,338 - ABZR87_RS04045 0.32 +0.4
848,338 - ABZR87_RS04045 0.32 +1.8
848,338 - ABZR87_RS04045 0.32 +0.4
848,349 + ABZR87_RS04045 0.33 +0.4
848,349 + ABZR87_RS04045 0.33 -0.3
848,349 + ABZR87_RS04045 0.33 +0.0
848,349 + ABZR87_RS04045 0.33 -0.5
848,350 - ABZR87_RS04045 0.33 -0.6
848,350 - ABZR87_RS04045 0.33 -0.4
848,400 + ABZR87_RS04045 0.38 -2.6
848,401 - ABZR87_RS04045 0.39 +1.4
848,401 - ABZR87_RS04045 0.39 -0.8
848,437 - ABZR87_RS04045 0.42 -0.7
848,574 + ABZR87_RS04045 0.57 -0.2
848,575 - ABZR87_RS04045 0.57 -0.2
848,575 - ABZR87_RS04045 0.57 -0.3
848,665 + ABZR87_RS04045 0.66 +0.6
848,666 - ABZR87_RS04045 0.66 -0.3
848,952 + +0.8
848,952 + +0.2
848,952 + +1.4
848,953 - +0.9
848,953 - +1.0
848,953 - -2.1
848,988 + +0.3
848,988 + -0.4
848,988 + +0.6
848,988 + +0.3
848,988 + -0.5
848,989 - -0.0
848,989 - +0.3
848,989 - -1.8
848,989 - -1.2
849,016 + -0.3
849,016 + -2.2
849,017 - -0.1

Or see this region's nucleotide sequence