Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03710 and ABZR87_RS03715 are separated by 91 nucleotides ABZR87_RS03715 and ABZR87_RS03720 are separated by 46 nucleotides ABZR87_RS03720 and ABZR87_RS03725 are separated by 700 nucleotides
ABZR87_RS03710: ABZR87_RS03710 - Hsp70 family protein, at 771,364 to 772,617
_RS03710
ABZR87_RS03715: ABZR87_RS03715 - NADPH-dependent FMN reductase, at 772,709 to 773,275
_RS03715
ABZR87_RS03720: ABZR87_RS03720 - hypothetical protein, at 773,322 to 773,690
_RS03720
ABZR87_RS03725: ABZR87_RS03725 - hypothetical protein, at 774,391 to 774,864
_RS03725
Position (kb) 773
774 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 772.468 kb on - strand, within ABZR87_RS03710 at 772.695 kb on + strand at 772.764 kb on + strand at 772.765 kb on - strand at 772.765 kb on - strand at 772.793 kb on - strand, within ABZR87_RS03715 at 772.806 kb on + strand, within ABZR87_RS03715 at 772.807 kb on - strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.812 kb on + strand, within ABZR87_RS03715 at 772.813 kb on - strand, within ABZR87_RS03715 at 772.813 kb on - strand, within ABZR87_RS03715 at 772.813 kb on - strand, within ABZR87_RS03715 at 772.924 kb on + strand, within ABZR87_RS03715 at 772.924 kb on + strand, within ABZR87_RS03715 at 772.924 kb on + strand, within ABZR87_RS03715 at 772.924 kb on + strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.925 kb on - strand, within ABZR87_RS03715 at 772.941 kb on - strand, within ABZR87_RS03715 at 772.941 kb on - strand, within ABZR87_RS03715 at 773.323 kb on + strand at 773.323 kb on + strand at 773.324 kb on - strand at 773.324 kb on - strand at 773.324 kb on - strand at 773.324 kb on - strand at 773.333 kb on - strand at 773.333 kb on - strand at 773.346 kb on + strand at 773.347 kb on - strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.355 kb on + strand at 773.356 kb on - strand at 773.356 kb on - strand at 773.356 kb on - strand at 773.356 kb on - strand at 773.356 kb on - strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.358 kb on + strand at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.359 kb on - strand, within ABZR87_RS03720 at 773.406 kb on + strand, within ABZR87_RS03720 at 773.406 kb on + strand, within ABZR87_RS03720 at 773.406 kb on + strand, within ABZR87_RS03720 at 773.406 kb on + strand, within ABZR87_RS03720 at 773.407 kb on - strand, within ABZR87_RS03720 at 773.410 kb on + strand, within ABZR87_RS03720 at 773.410 kb on + strand, within ABZR87_RS03720 at 773.411 kb on - strand, within ABZR87_RS03720 at 773.411 kb on - strand, within ABZR87_RS03720 at 773.411 kb on - strand, within ABZR87_RS03720 at 773.411 kb on - strand, within ABZR87_RS03720 at 773.429 kb on + strand, within ABZR87_RS03720 at 773.429 kb on + strand, within ABZR87_RS03720 at 773.441 kb on + strand, within ABZR87_RS03720 at 773.441 kb on + strand, within ABZR87_RS03720 at 773.441 kb on + strand, within ABZR87_RS03720 at 773.578 kb on + strand, within ABZR87_RS03720 at 773.582 kb on + strand, within ABZR87_RS03720 at 773.582 kb on + strand, within ABZR87_RS03720 at 773.653 kb on + strand, within ABZR87_RS03720 at 773.653 kb on + strand, within ABZR87_RS03720 at 773.654 kb on - strand at 773.690 kb on + strand at 773.690 kb on + strand at 773.690 kb on + strand at 773.691 kb on - strand at 773.691 kb on - strand at 773.691 kb on - strand at 773.820 kb on + strand at 773.820 kb on + strand at 773.927 kb on + strand at 773.927 kb on + strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.928 kb on - strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.929 kb on + strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.930 kb on - strand at 773.985 kb on + strand at 773.985 kb on + strand at 773.986 kb on - strand at 773.986 kb on - strand at 773.986 kb on - strand at 773.986 kb on - strand at 773.986 kb on - strand at 774.188 kb on - strand at 774.188 kb on - strand at 774.302 kb on + strand at 774.302 kb on + strand at 774.302 kb on + strand at 774.303 kb on - strand at 774.303 kb on - strand at 774.303 kb on - strand at 774.315 kb on + strand at 774.370 kb on - strand at 774.378 kb on + strand at 774.378 kb on + strand at 774.378 kb on + strand at 774.378 kb on + strand at 774.378 kb on + strand at 774.379 kb on - strand at 774.379 kb on - strand at 774.379 kb on - strand at 774.379 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 772,468 - ABZR87_RS03710 0.88 +0.4 772,695 + -0.6 772,764 + +0.7 772,765 - +0.2 772,765 - +0.0 772,793 - ABZR87_RS03715 0.15 +0.6 772,806 + ABZR87_RS03715 0.17 -0.8 772,807 - ABZR87_RS03715 0.17 -0.6 772,812 + ABZR87_RS03715 0.18 -0.8 772,812 + ABZR87_RS03715 0.18 -1.4 772,812 + ABZR87_RS03715 0.18 -0.3 772,812 + ABZR87_RS03715 0.18 -1.1 772,812 + ABZR87_RS03715 0.18 -0.8 772,812 + ABZR87_RS03715 0.18 +0.8 772,812 + ABZR87_RS03715 0.18 +0.1 772,813 - ABZR87_RS03715 0.18 -0.4 772,813 - ABZR87_RS03715 0.18 -0.7 772,813 - ABZR87_RS03715 0.18 -0.4 772,924 + ABZR87_RS03715 0.38 +0.5 772,924 + ABZR87_RS03715 0.38 -2.2 772,924 + ABZR87_RS03715 0.38 +0.3 772,924 + ABZR87_RS03715 0.38 +0.6 772,925 - ABZR87_RS03715 0.38 -0.6 772,925 - ABZR87_RS03715 0.38 -0.9 772,925 - ABZR87_RS03715 0.38 +0.7 772,925 - ABZR87_RS03715 0.38 -0.8 772,925 - ABZR87_RS03715 0.38 +0.6 772,925 - ABZR87_RS03715 0.38 -0.1 772,941 - ABZR87_RS03715 0.41 +0.1 772,941 - ABZR87_RS03715 0.41 +1.6 773,323 + -0.6 773,323 + -1.1 773,324 - +1.3 773,324 - +0.9 773,324 - -0.3 773,324 - -0.9 773,333 - +0.2 773,333 - -0.3 773,346 + +0.4 773,347 - -0.7 773,355 + -0.9 773,355 + -0.1 773,355 + +1.0 773,355 + -0.4 773,355 + +0.7 773,355 + -0.8 773,355 + -1.3 773,356 - +0.7 773,356 - +0.1 773,356 - +0.3 773,356 - +1.0 773,356 - +0.5 773,358 + -0.3 773,358 + -0.6 773,358 + -1.2 773,358 + +0.7 773,358 + -0.8 773,359 - ABZR87_RS03720 0.10 -0.3 773,359 - ABZR87_RS03720 0.10 +0.2 773,359 - ABZR87_RS03720 0.10 -0.2 773,359 - ABZR87_RS03720 0.10 +0.0 773,359 - ABZR87_RS03720 0.10 +0.0 773,359 - ABZR87_RS03720 0.10 -0.4 773,359 - ABZR87_RS03720 0.10 -0.2 773,359 - ABZR87_RS03720 0.10 +0.3 773,359 - ABZR87_RS03720 0.10 +1.2 773,406 + ABZR87_RS03720 0.23 +0.9 773,406 + ABZR87_RS03720 0.23 -1.8 773,406 + ABZR87_RS03720 0.23 -1.1 773,406 + ABZR87_RS03720 0.23 -1.0 773,407 - ABZR87_RS03720 0.23 +0.4 773,410 + ABZR87_RS03720 0.24 +1.7 773,410 + ABZR87_RS03720 0.24 -1.0 773,411 - ABZR87_RS03720 0.24 +0.3 773,411 - ABZR87_RS03720 0.24 +0.3 773,411 - ABZR87_RS03720 0.24 +1.0 773,411 - ABZR87_RS03720 0.24 -1.5 773,429 + ABZR87_RS03720 0.29 -0.9 773,429 + ABZR87_RS03720 0.29 +3.2 773,441 + ABZR87_RS03720 0.32 -0.4 773,441 + ABZR87_RS03720 0.32 -0.9 773,441 + ABZR87_RS03720 0.32 +0.9 773,578 + ABZR87_RS03720 0.69 -0.0 773,582 + ABZR87_RS03720 0.70 -0.5 773,582 + ABZR87_RS03720 0.70 +0.2 773,653 + ABZR87_RS03720 0.90 -0.5 773,653 + ABZR87_RS03720 0.90 -0.6 773,654 - +3.1 773,690 + -0.5 773,690 + -0.5 773,690 + -0.1 773,691 - -0.3 773,691 - -0.5 773,691 - -0.5 773,820 + -1.2 773,820 + +0.7 773,927 + -0.4 773,927 + +0.5 773,928 - +2.1 773,928 - -1.0 773,928 - +0.4 773,929 + +0.2 773,929 + -1.1 773,929 + +0.1 773,929 + -0.5 773,929 + -2.1 773,929 + +0.7 773,929 + -0.1 773,929 + +0.1 773,929 + +0.5 773,929 + +0.4 773,930 - +0.7 773,930 - +0.8 773,930 - +0.5 773,930 - -1.0 773,930 - -0.4 773,930 - +1.2 773,985 + -0.4 773,985 + -0.1 773,986 - -2.2 773,986 - -2.9 773,986 - +0.0 773,986 - -1.8 773,986 - +3.1 774,188 - +1.2 774,188 - +0.3 774,302 + -3.0 774,302 + -1.5 774,302 + +1.9 774,303 - -1.6 774,303 - -0.6 774,303 - +0.9 774,315 + +0.4 774,370 - -0.3 774,378 + -1.0 774,378 + +0.4 774,378 + +0.2 774,378 + +0.3 774,378 + +0.6 774,379 - -0.6 774,379 - -2.4 774,379 - +0.5 774,379 - +0.3
Or see this region's nucleotide sequence