Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS03530 and ABZR87_RS03535 are separated by 129 nucleotides ABZR87_RS03535 and ABZR87_RS03540 are separated by 197 nucleotides ABZR87_RS03540 and ABZR87_RS03545 are separated by 281 nucleotides ABZR87_RS03545 and ABZR87_RS03550 are separated by 89 nucleotides
ABZR87_RS03530: ABZR87_RS03530 - bifunctional glycoside hydrolase 114/ polysaccharide deacetylase family protein, at 741,317 to 744,094
_RS03530
ABZR87_RS03535: ABZR87_RS03535 - hypothetical protein, at 744,224 to 744,451
_RS03535
ABZR87_RS03540: ABZR87_RS03540 - SDR family oxidoreductase, at 744,649 to 745,437
_RS03540
ABZR87_RS03545: ABZR87_RS03545 - MarR family transcriptional regulator, at 745,719 to 746,207
_RS03545
ABZR87_RS03550: ABZR87_RS03550 - response regulator transcription factor, at 746,297 to 746,995
_RS03550
Position (kb) 744
745
746 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 743.718 kb on + strand, within ABZR87_RS03530 at 743.718 kb on + strand, within ABZR87_RS03530 at 743.718 kb on + strand, within ABZR87_RS03530 at 743.719 kb on - strand, within ABZR87_RS03530 at 743.719 kb on - strand, within ABZR87_RS03530 at 743.810 kb on + strand, within ABZR87_RS03530 at 743.810 kb on + strand, within ABZR87_RS03530 at 743.811 kb on - strand, within ABZR87_RS03530 at 743.811 kb on - strand, within ABZR87_RS03530 at 743.811 kb on - strand, within ABZR87_RS03530 at 743.811 kb on - strand, within ABZR87_RS03530 at 743.811 kb on - strand, within ABZR87_RS03530 at 743.928 kb on + strand at 743.928 kb on + strand at 743.929 kb on - strand at 743.929 kb on - strand at 743.931 kb on + strand at 743.931 kb on + strand at 743.931 kb on + strand at 743.931 kb on + strand at 743.931 kb on + strand at 743.931 kb on + strand at 743.932 kb on - strand at 743.932 kb on - strand at 743.932 kb on - strand at 743.932 kb on - strand at 743.932 kb on - strand at 743.932 kb on - strand at 743.932 kb on - strand at 743.932 kb on - strand at 744.228 kb on + strand at 744.228 kb on + strand at 744.243 kb on + strand at 744.243 kb on + strand at 744.243 kb on + strand at 744.243 kb on + strand at 744.244 kb on - strand at 744.244 kb on - strand at 744.244 kb on - strand at 744.244 kb on - strand at 744.244 kb on - strand at 744.306 kb on + strand, within ABZR87_RS03535 at 744.306 kb on + strand, within ABZR87_RS03535 at 744.306 kb on + strand, within ABZR87_RS03535 at 744.306 kb on + strand, within ABZR87_RS03535 at 744.306 kb on + strand, within ABZR87_RS03535 at 744.306 kb on + strand, within ABZR87_RS03535 at 744.306 kb on + strand, within ABZR87_RS03535 at 744.306 kb on + strand, within ABZR87_RS03535 at 744.307 kb on - strand, within ABZR87_RS03535 at 744.307 kb on - strand, within ABZR87_RS03535 at 744.307 kb on - strand, within ABZR87_RS03535 at 744.307 kb on - strand, within ABZR87_RS03535 at 744.307 kb on - strand, within ABZR87_RS03535 at 744.307 kb on - strand, within ABZR87_RS03535 at 744.307 kb on - strand, within ABZR87_RS03535 at 744.307 kb on - strand, within ABZR87_RS03535 at 744.334 kb on - strand, within ABZR87_RS03535 at 744.334 kb on - strand, within ABZR87_RS03535 at 744.432 kb on + strand at 744.433 kb on - strand at 744.478 kb on - strand at 744.537 kb on + strand at 744.538 kb on - strand at 744.599 kb on + strand at 744.600 kb on - strand at 744.650 kb on + strand at 744.650 kb on + strand at 744.650 kb on + strand at 744.650 kb on + strand at 744.650 kb on + strand at 744.651 kb on - strand at 744.651 kb on - strand at 744.651 kb on - strand at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.728 kb on + strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.729 kb on - strand, within ABZR87_RS03540 at 744.977 kb on + strand, within ABZR87_RS03540 at 744.977 kb on + strand, within ABZR87_RS03540 at 745.067 kb on + strand, within ABZR87_RS03540 at 745.067 kb on + strand, within ABZR87_RS03540 at 745.067 kb on + strand, within ABZR87_RS03540 at 745.068 kb on - strand, within ABZR87_RS03540 at 745.363 kb on + strand at 745.364 kb on - strand at 745.364 kb on - strand at 745.455 kb on + strand at 745.456 kb on - strand at 745.456 kb on - strand at 745.456 kb on - strand at 745.456 kb on - strand at 745.499 kb on + strand at 745.500 kb on - strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.524 kb on + strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.525 kb on - strand at 745.569 kb on + strand at 745.637 kb on - strand at 745.637 kb on - strand at 745.637 kb on - strand at 745.682 kb on + strand at 745.682 kb on + strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.683 kb on - strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.732 kb on + strand at 745.733 kb on - strand at 745.733 kb on - strand at 745.733 kb on - strand at 745.733 kb on - strand at 745.733 kb on - strand at 745.777 kb on - strand, within ABZR87_RS03545 at 745.803 kb on - strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.911 kb on + strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.912 kb on - strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.965 kb on + strand, within ABZR87_RS03545 at 745.966 kb on - strand, within ABZR87_RS03545 at 745.966 kb on - strand, within ABZR87_RS03545 at 745.966 kb on - strand, within ABZR87_RS03545 at 745.966 kb on - strand, within ABZR87_RS03545 at 746.091 kb on + strand, within ABZR87_RS03545 at 746.091 kb on + strand, within ABZR87_RS03545 at 746.091 kb on + strand, within ABZR87_RS03545 at 746.092 kb on - strand, within ABZR87_RS03545 at 746.199 kb on - strand at 746.199 kb on - strand at 746.199 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 743,718 + ABZR87_RS03530 0.86 -0.9 743,718 + ABZR87_RS03530 0.86 -1.9 743,718 + ABZR87_RS03530 0.86 -0.9 743,719 - ABZR87_RS03530 0.86 +1.8 743,719 - ABZR87_RS03530 0.86 -0.8 743,810 + ABZR87_RS03530 0.90 +0.0 743,810 + ABZR87_RS03530 0.90 -0.1 743,811 - ABZR87_RS03530 0.90 -0.4 743,811 - ABZR87_RS03530 0.90 +1.5 743,811 - ABZR87_RS03530 0.90 +0.3 743,811 - ABZR87_RS03530 0.90 +0.9 743,811 - ABZR87_RS03530 0.90 +2.3 743,928 + -0.0 743,928 + -1.2 743,929 - -0.2 743,929 - +0.2 743,931 + +0.9 743,931 + -0.1 743,931 + -0.4 743,931 + +0.5 743,931 + -2.2 743,931 + +0.3 743,932 - +1.0 743,932 - -1.8 743,932 - +0.9 743,932 - -0.0 743,932 - -0.3 743,932 - -0.1 743,932 - -0.1 743,932 - +0.4 744,228 + -0.2 744,228 + -1.2 744,243 + -0.2 744,243 + +0.3 744,243 + +0.6 744,243 + -0.5 744,244 - +0.8 744,244 - -3.0 744,244 - -0.3 744,244 - -1.3 744,244 - -0.5 744,306 + ABZR87_RS03535 0.36 +0.8 744,306 + ABZR87_RS03535 0.36 +0.4 744,306 + ABZR87_RS03535 0.36 -0.3 744,306 + ABZR87_RS03535 0.36 +0.5 744,306 + ABZR87_RS03535 0.36 -1.9 744,306 + ABZR87_RS03535 0.36 -1.0 744,306 + ABZR87_RS03535 0.36 -0.3 744,306 + ABZR87_RS03535 0.36 -1.5 744,307 - ABZR87_RS03535 0.36 +0.2 744,307 - ABZR87_RS03535 0.36 +0.0 744,307 - ABZR87_RS03535 0.36 -1.1 744,307 - ABZR87_RS03535 0.36 -0.8 744,307 - ABZR87_RS03535 0.36 +0.3 744,307 - ABZR87_RS03535 0.36 +0.3 744,307 - ABZR87_RS03535 0.36 -0.1 744,307 - ABZR87_RS03535 0.36 -3.0 744,334 - ABZR87_RS03535 0.48 +0.6 744,334 - ABZR87_RS03535 0.48 +2.8 744,432 + -1.0 744,433 - +2.5 744,478 - +1.6 744,537 + -0.3 744,538 - +4.8 744,599 + +1.0 744,600 - -0.6 744,650 + +0.4 744,650 + +1.8 744,650 + +1.2 744,650 + +0.7 744,650 + +0.3 744,651 - +0.2 744,651 - -1.1 744,651 - -0.9 744,728 + ABZR87_RS03540 0.10 +1.4 744,728 + ABZR87_RS03540 0.10 -0.0 744,728 + ABZR87_RS03540 0.10 -0.2 744,728 + ABZR87_RS03540 0.10 +0.8 744,728 + ABZR87_RS03540 0.10 +0.5 744,728 + ABZR87_RS03540 0.10 +1.4 744,728 + ABZR87_RS03540 0.10 +0.9 744,728 + ABZR87_RS03540 0.10 -0.3 744,728 + ABZR87_RS03540 0.10 -0.6 744,728 + ABZR87_RS03540 0.10 +1.2 744,728 + ABZR87_RS03540 0.10 -0.7 744,728 + ABZR87_RS03540 0.10 +1.0 744,729 - ABZR87_RS03540 0.10 -0.6 744,729 - ABZR87_RS03540 0.10 -0.9 744,729 - ABZR87_RS03540 0.10 +0.2 744,729 - ABZR87_RS03540 0.10 -0.4 744,729 - ABZR87_RS03540 0.10 +0.8 744,729 - ABZR87_RS03540 0.10 +0.6 744,729 - ABZR87_RS03540 0.10 -1.1 744,729 - ABZR87_RS03540 0.10 -1.6 744,729 - ABZR87_RS03540 0.10 -0.6 744,729 - ABZR87_RS03540 0.10 +1.3 744,729 - ABZR87_RS03540 0.10 +0.1 744,977 + ABZR87_RS03540 0.42 +1.1 744,977 + ABZR87_RS03540 0.42 +0.8 745,067 + ABZR87_RS03540 0.53 +0.4 745,067 + ABZR87_RS03540 0.53 +1.5 745,067 + ABZR87_RS03540 0.53 -0.3 745,068 - ABZR87_RS03540 0.53 -0.8 745,363 + +0.7 745,364 - +1.2 745,364 - +0.3 745,455 + +0.7 745,456 - -0.4 745,456 - +0.4 745,456 - +0.9 745,456 - -0.6 745,499 + +1.3 745,500 - -0.7 745,524 + +0.2 745,524 + +2.1 745,524 + -0.6 745,524 + +0.0 745,524 + +0.3 745,524 + +1.6 745,524 + -0.5 745,524 + -0.1 745,524 + +0.7 745,525 - -0.5 745,525 - -0.9 745,525 - -0.4 745,525 - +1.7 745,525 - -0.1 745,525 - +0.7 745,525 - +1.6 745,525 - -1.9 745,525 - +0.8 745,525 - +0.1 745,569 + +0.6 745,637 - -0.8 745,637 - -0.6 745,637 - -1.1 745,682 + +0.9 745,682 + +0.7 745,683 - -0.3 745,683 - -0.4 745,683 - +1.6 745,683 - -0.8 745,683 - +0.0 745,683 - +0.5 745,732 + +0.4 745,732 + +0.5 745,732 + -0.1 745,732 + +0.1 745,732 + -0.6 745,732 + +0.5 745,732 + -0.1 745,733 - -0.5 745,733 - -0.6 745,733 - -1.4 745,733 - -0.4 745,733 - -0.9 745,777 - ABZR87_RS03545 0.12 +1.1 745,803 - ABZR87_RS03545 0.17 +1.3 745,911 + ABZR87_RS03545 0.39 -1.0 745,911 + ABZR87_RS03545 0.39 +0.3 745,911 + ABZR87_RS03545 0.39 +1.2 745,911 + ABZR87_RS03545 0.39 -0.8 745,911 + ABZR87_RS03545 0.39 -0.1 745,911 + ABZR87_RS03545 0.39 -0.0 745,911 + ABZR87_RS03545 0.39 -0.1 745,912 - ABZR87_RS03545 0.39 +3.2 745,912 - ABZR87_RS03545 0.39 -0.1 745,912 - ABZR87_RS03545 0.39 +0.9 745,912 - ABZR87_RS03545 0.39 -0.4 745,912 - ABZR87_RS03545 0.39 -0.1 745,912 - ABZR87_RS03545 0.39 -0.1 745,912 - ABZR87_RS03545 0.39 -0.7 745,965 + ABZR87_RS03545 0.50 +0.8 745,965 + ABZR87_RS03545 0.50 +0.6 745,965 + ABZR87_RS03545 0.50 -0.3 745,965 + ABZR87_RS03545 0.50 -0.4 745,965 + ABZR87_RS03545 0.50 +0.5 745,966 - ABZR87_RS03545 0.51 +1.2 745,966 - ABZR87_RS03545 0.51 +0.9 745,966 - ABZR87_RS03545 0.51 +2.2 745,966 - ABZR87_RS03545 0.51 +0.5 746,091 + ABZR87_RS03545 0.76 +1.8 746,091 + ABZR87_RS03545 0.76 -0.5 746,091 + ABZR87_RS03545 0.76 +1.1 746,092 - ABZR87_RS03545 0.76 -1.1 746,199 - -0.6 746,199 - -1.0 746,199 - +0.1
Or see this region's nucleotide sequence