Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS02305

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS02295 and ABZR87_RS02300 are separated by 158 nucleotidesABZR87_RS02300 and ABZR87_RS02305 are separated by 9 nucleotidesABZR87_RS02305 and ABZR87_RS02310 overlap by 4 nucleotides ABZR87_RS02295: ABZR87_RS02295 - hypothetical protein, at 492,628 to 492,939 _RS02295 ABZR87_RS02300: ABZR87_RS02300 - aminoacyl-tRNA deacylase, at 493,098 to 493,586 _RS02300 ABZR87_RS02305: ABZR87_RS02305 - CDGSH iron-sulfur domain-containing protein, at 493,596 to 493,820 _RS02305 ABZR87_RS02310: ABZR87_RS02310 - energy-dependent translational throttle protein EttA, at 493,817 to 495,484 _RS02310 Position (kb) 493 494Strain fitness (log2 ratio) -2 -1 0 1 2at 492.726 kb on - strand, within ABZR87_RS02295at 492.742 kb on + strand, within ABZR87_RS02295at 492.742 kb on + strand, within ABZR87_RS02295at 492.742 kb on + strand, within ABZR87_RS02295at 492.742 kb on + strand, within ABZR87_RS02295at 492.742 kb on + strand, within ABZR87_RS02295at 492.743 kb on - strand, within ABZR87_RS02295at 492.743 kb on - strand, within ABZR87_RS02295at 492.743 kb on - strand, within ABZR87_RS02295at 492.743 kb on - strand, within ABZR87_RS02295at 492.763 kb on + strand, within ABZR87_RS02295at 492.763 kb on + strand, within ABZR87_RS02295at 492.763 kb on + strand, within ABZR87_RS02295at 492.764 kb on - strand, within ABZR87_RS02295at 492.764 kb on - strand, within ABZR87_RS02295at 492.784 kb on + strand, within ABZR87_RS02295at 492.784 kb on + strand, within ABZR87_RS02295at 492.784 kb on + strand, within ABZR87_RS02295at 492.785 kb on - strand, within ABZR87_RS02295at 492.785 kb on - strand, within ABZR87_RS02295at 492.785 kb on - strand, within ABZR87_RS02295at 492.802 kb on + strand, within ABZR87_RS02295at 492.803 kb on - strand, within ABZR87_RS02295at 492.803 kb on - strand, within ABZR87_RS02295at 492.803 kb on - strand, within ABZR87_RS02295at 492.823 kb on + strand, within ABZR87_RS02295at 492.832 kb on + strand, within ABZR87_RS02295at 492.832 kb on + strand, within ABZR87_RS02295at 492.832 kb on + strand, within ABZR87_RS02295at 492.835 kb on + strand, within ABZR87_RS02295at 492.851 kb on - strand, within ABZR87_RS02295at 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.038 kb on + strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.039 kb on - strandat 493.048 kb on + strandat 493.049 kb on - strandat 493.049 kb on - strandat 493.149 kb on + strand, within ABZR87_RS02300at 493.150 kb on - strand, within ABZR87_RS02300at 493.150 kb on - strand, within ABZR87_RS02300at 493.150 kb on - strand, within ABZR87_RS02300at 493.150 kb on - strand, within ABZR87_RS02300at 493.172 kb on + strand, within ABZR87_RS02300at 493.172 kb on + strand, within ABZR87_RS02300at 493.178 kb on + strand, within ABZR87_RS02300at 493.178 kb on + strand, within ABZR87_RS02300at 493.179 kb on - strand, within ABZR87_RS02300at 493.179 kb on - strand, within ABZR87_RS02300at 493.179 kb on - strand, within ABZR87_RS02300at 493.237 kb on + strand, within ABZR87_RS02300at 493.237 kb on + strand, within ABZR87_RS02300at 493.261 kb on - strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.287 kb on + strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.288 kb on - strand, within ABZR87_RS02300at 493.417 kb on - strand, within ABZR87_RS02300at 493.417 kb on - strand, within ABZR87_RS02300at 493.417 kb on - strand, within ABZR87_RS02300at 493.431 kb on + strand, within ABZR87_RS02300at 493.431 kb on + strand, within ABZR87_RS02300at 493.431 kb on + strand, within ABZR87_RS02300at 493.431 kb on + strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.432 kb on - strand, within ABZR87_RS02300at 493.467 kb on + strand, within ABZR87_RS02300at 493.468 kb on - strand, within ABZR87_RS02300at 493.468 kb on - strand, within ABZR87_RS02300at 493.468 kb on - strand, within ABZR87_RS02300at 493.468 kb on - strand, within ABZR87_RS02300at 493.502 kb on + strand, within ABZR87_RS02300at 493.502 kb on + strand, within ABZR87_RS02300at 493.502 kb on + strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.503 kb on - strand, within ABZR87_RS02300at 493.693 kb on + strand, within ABZR87_RS02305at 493.694 kb on - strand, within ABZR87_RS02305at 493.819 kb on - strandat 493.826 kb on - strandat 493.896 kb on + strandat 493.896 kb on + strandat 493.896 kb on + strandat 493.896 kb on + strandat 493.896 kb on + strandat 493.905 kb on + strandat 493.906 kb on - strandat 493.906 kb on - strandat 494.205 kb on + strand, within ABZR87_RS02310at 494.205 kb on + strand, within ABZR87_RS02310at 494.205 kb on + strand, within ABZR87_RS02310at 494.205 kb on + strand, within ABZR87_RS02310at 494.205 kb on + strand, within ABZR87_RS02310at 494.206 kb on - strand, within ABZR87_RS02310at 494.206 kb on - strand, within ABZR87_RS02310at 494.316 kb on + strand, within ABZR87_RS02310at 494.317 kb on - strand, within ABZR87_RS02310at 494.317 kb on - strand, within ABZR87_RS02310at 494.401 kb on + strand, within ABZR87_RS02310at 494.401 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.487 kb on + strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.488 kb on - strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.754 kb on + strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310at 494.755 kb on - strand, within ABZR87_RS02310

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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492,726 - ABZR87_RS02295 0.31 -0.2
492,742 + ABZR87_RS02295 0.37 -0.6
492,742 + ABZR87_RS02295 0.37 -0.0
492,742 + ABZR87_RS02295 0.37 -0.0
492,742 + ABZR87_RS02295 0.37 -0.5
492,742 + ABZR87_RS02295 0.37 +0.1
492,743 - ABZR87_RS02295 0.37 +1.2
492,743 - ABZR87_RS02295 0.37 -0.4
492,743 - ABZR87_RS02295 0.37 +0.2
492,743 - ABZR87_RS02295 0.37 +0.6
492,763 + ABZR87_RS02295 0.43 -0.0
492,763 + ABZR87_RS02295 0.43 +0.5
492,763 + ABZR87_RS02295 0.43 -1.3
492,764 - ABZR87_RS02295 0.44 +1.4
492,764 - ABZR87_RS02295 0.44 +0.1
492,784 + ABZR87_RS02295 0.50 +1.5
492,784 + ABZR87_RS02295 0.50 -0.4
492,784 + ABZR87_RS02295 0.50 +0.4
492,785 - ABZR87_RS02295 0.50 +0.3
492,785 - ABZR87_RS02295 0.50 +0.5
492,785 - ABZR87_RS02295 0.50 -0.1
492,802 + ABZR87_RS02295 0.56 -2.3
492,803 - ABZR87_RS02295 0.56 -0.3
492,803 - ABZR87_RS02295 0.56 +0.5
492,803 - ABZR87_RS02295 0.56 -0.1
492,823 + ABZR87_RS02295 0.62 +0.2
492,832 + ABZR87_RS02295 0.65 +0.6
492,832 + ABZR87_RS02295 0.65 -0.3
492,832 + ABZR87_RS02295 0.65 -0.3
492,835 + ABZR87_RS02295 0.66 +0.5
492,851 - ABZR87_RS02295 0.71 -0.8
493,038 + +0.5
493,038 + -0.0
493,038 + -1.2
493,038 + +0.6
493,038 + +0.6
493,038 + +0.6
493,038 + +0.3
493,038 + -1.5
493,038 + +0.6
493,038 + +0.7
493,038 + +1.2
493,038 + +0.6
493,038 + -0.2
493,039 - -1.4
493,039 - -0.7
493,039 - -1.4
493,039 - -0.2
493,039 - +0.5
493,039 - -0.7
493,048 + +0.5
493,049 - +1.0
493,049 - -0.5
493,149 + ABZR87_RS02300 0.10 -0.6
493,150 - ABZR87_RS02300 0.11 -0.7
493,150 - ABZR87_RS02300 0.11 +0.1
493,150 - ABZR87_RS02300 0.11 +0.6
493,150 - ABZR87_RS02300 0.11 -0.4
493,172 + ABZR87_RS02300 0.15 -0.4
493,172 + ABZR87_RS02300 0.15 +0.2
493,178 + ABZR87_RS02300 0.16 -0.9
493,178 + ABZR87_RS02300 0.16 +1.0
493,179 - ABZR87_RS02300 0.17 -0.3
493,179 - ABZR87_RS02300 0.17 -2.3
493,179 - ABZR87_RS02300 0.17 -0.3
493,237 + ABZR87_RS02300 0.28 -0.5
493,237 + ABZR87_RS02300 0.28 +0.2
493,261 - ABZR87_RS02300 0.33 -1.1
493,287 + ABZR87_RS02300 0.39 -0.6
493,287 + ABZR87_RS02300 0.39 +0.4
493,287 + ABZR87_RS02300 0.39 +0.2
493,287 + ABZR87_RS02300 0.39 -0.3
493,287 + ABZR87_RS02300 0.39 -0.2
493,287 + ABZR87_RS02300 0.39 +0.4
493,287 + ABZR87_RS02300 0.39 -1.4
493,288 - ABZR87_RS02300 0.39 +1.2
493,288 - ABZR87_RS02300 0.39 -0.1
493,288 - ABZR87_RS02300 0.39 -0.8
493,288 - ABZR87_RS02300 0.39 -1.8
493,288 - ABZR87_RS02300 0.39 -0.5
493,417 - ABZR87_RS02300 0.65 -0.0
493,417 - ABZR87_RS02300 0.65 -0.1
493,417 - ABZR87_RS02300 0.65 -0.0
493,431 + ABZR87_RS02300 0.68 -0.3
493,431 + ABZR87_RS02300 0.68 +0.1
493,431 + ABZR87_RS02300 0.68 -0.9
493,431 + ABZR87_RS02300 0.68 -1.1
493,432 - ABZR87_RS02300 0.68 +1.5
493,432 - ABZR87_RS02300 0.68 +0.1
493,432 - ABZR87_RS02300 0.68 +0.7
493,432 - ABZR87_RS02300 0.68 -0.2
493,432 - ABZR87_RS02300 0.68 -2.2
493,467 + ABZR87_RS02300 0.75 -2.4
493,468 - ABZR87_RS02300 0.76 -0.7
493,468 - ABZR87_RS02300 0.76 +0.3
493,468 - ABZR87_RS02300 0.76 -0.1
493,468 - ABZR87_RS02300 0.76 -0.2
493,502 + ABZR87_RS02300 0.83 -0.5
493,502 + ABZR87_RS02300 0.83 +1.9
493,502 + ABZR87_RS02300 0.83 +2.3
493,503 - ABZR87_RS02300 0.83 -1.6
493,503 - ABZR87_RS02300 0.83 -0.2
493,503 - ABZR87_RS02300 0.83 -1.0
493,503 - ABZR87_RS02300 0.83 -1.1
493,503 - ABZR87_RS02300 0.83 -1.9
493,503 - ABZR87_RS02300 0.83 +0.2
493,503 - ABZR87_RS02300 0.83 +0.4
493,503 - ABZR87_RS02300 0.83 -0.7
493,693 + ABZR87_RS02305 0.43 +0.4
493,694 - ABZR87_RS02305 0.44 +0.3
493,819 - -0.5
493,826 - +0.5
493,896 + +1.1
493,896 + +0.1
493,896 + +0.2
493,896 + -0.2
493,896 + +0.9
493,905 + -0.4
493,906 - +0.2
493,906 - -0.4
494,205 + ABZR87_RS02310 0.23 -0.2
494,205 + ABZR87_RS02310 0.23 +0.1
494,205 + ABZR87_RS02310 0.23 -0.5
494,205 + ABZR87_RS02310 0.23 +1.1
494,205 + ABZR87_RS02310 0.23 +2.2
494,206 - ABZR87_RS02310 0.23 -1.0
494,206 - ABZR87_RS02310 0.23 +0.4
494,316 + ABZR87_RS02310 0.30 +0.5
494,317 - ABZR87_RS02310 0.30 -1.2
494,317 - ABZR87_RS02310 0.30 +0.8
494,401 + ABZR87_RS02310 0.35 +0.1
494,401 + ABZR87_RS02310 0.35 -0.1
494,487 + ABZR87_RS02310 0.40 +0.4
494,487 + ABZR87_RS02310 0.40 -1.3
494,487 + ABZR87_RS02310 0.40 +0.5
494,487 + ABZR87_RS02310 0.40 +0.5
494,487 + ABZR87_RS02310 0.40 -0.3
494,488 - ABZR87_RS02310 0.40 -0.7
494,488 - ABZR87_RS02310 0.40 +0.6
494,488 - ABZR87_RS02310 0.40 +0.3
494,488 - ABZR87_RS02310 0.40 -1.1
494,488 - ABZR87_RS02310 0.40 -0.3
494,754 + ABZR87_RS02310 0.56 -0.8
494,754 + ABZR87_RS02310 0.56 -0.2
494,754 + ABZR87_RS02310 0.56 -0.7
494,754 + ABZR87_RS02310 0.56 +0.7
494,754 + ABZR87_RS02310 0.56 -0.2
494,754 + ABZR87_RS02310 0.56 +0.6
494,754 + ABZR87_RS02310 0.56 -0.0
494,755 - ABZR87_RS02310 0.56 +0.5
494,755 - ABZR87_RS02310 0.56 +0.1
494,755 - ABZR87_RS02310 0.56 -1.3
494,755 - ABZR87_RS02310 0.56 -0.4
494,755 - ABZR87_RS02310 0.56 +0.8
494,755 - ABZR87_RS02310 0.56 -0.3
494,755 - ABZR87_RS02310 0.56 -1.5
494,755 - ABZR87_RS02310 0.56 -0.0

Or see this region's nucleotide sequence