Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS02090 and ABZR87_RS02095 are separated by 613 nucleotides ABZR87_RS02095 and ABZR87_RS02100 are separated by 83 nucleotides ABZR87_RS02100 and ABZR87_RS02105 are separated by 4 nucleotides
ABZR87_RS02090: ABZR87_RS02090 - 16S ribosomal RNA, at 449,499 to 451,038
_RS02090
ABZR87_RS02095: ABZR87_RS02095 - enoyl-CoA hydratase, at 451,652 to 452,428
_RS02095
ABZR87_RS02100: ABZR87_RS02100 - 2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase PaaG, at 452,512 to 453,300
_RS02100
ABZR87_RS02105: ABZR87_RS02105 - hydroxyphenylacetyl-CoA thioesterase PaaI, at 453,305 to 453,772
_RS02105
Position (kb) 451
452
453 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 451.365 kb on - strand at 451.365 kb on - strand at 451.469 kb on + strand at 451.469 kb on + strand at 451.469 kb on + strand at 451.469 kb on + strand at 451.469 kb on + strand at 451.469 kb on + strand at 451.469 kb on + strand at 451.469 kb on + strand at 451.470 kb on - strand at 451.470 kb on - strand at 451.470 kb on - strand at 451.470 kb on - strand at 451.470 kb on - strand at 451.471 kb on + strand at 451.472 kb on - strand at 451.537 kb on - strand at 451.553 kb on + strand at 451.553 kb on + strand at 451.553 kb on + strand at 451.553 kb on + strand at 451.553 kb on + strand at 451.554 kb on - strand at 451.554 kb on - strand at 451.554 kb on - strand at 451.602 kb on - strand at 451.653 kb on + strand at 451.782 kb on + strand, within ABZR87_RS02095 at 451.782 kb on + strand, within ABZR87_RS02095 at 451.783 kb on - strand, within ABZR87_RS02095 at 451.783 kb on - strand, within ABZR87_RS02095 at 452.181 kb on + strand, within ABZR87_RS02095 at 452.181 kb on + strand, within ABZR87_RS02095 at 452.181 kb on + strand, within ABZR87_RS02095 at 452.181 kb on + strand, within ABZR87_RS02095 at 452.181 kb on + strand, within ABZR87_RS02095 at 452.181 kb on + strand, within ABZR87_RS02095 at 452.181 kb on + strand, within ABZR87_RS02095 at 452.181 kb on + strand, within ABZR87_RS02095 at 452.181 kb on + strand, within ABZR87_RS02095 at 452.182 kb on - strand, within ABZR87_RS02095 at 452.182 kb on - strand, within ABZR87_RS02095 at 452.191 kb on + strand, within ABZR87_RS02095 at 452.191 kb on + strand, within ABZR87_RS02095 at 452.191 kb on + strand, within ABZR87_RS02095 at 452.191 kb on + strand, within ABZR87_RS02095 at 452.192 kb on - strand, within ABZR87_RS02095 at 452.192 kb on - strand, within ABZR87_RS02095 at 452.192 kb on - strand, within ABZR87_RS02095 at 452.192 kb on - strand, within ABZR87_RS02095 at 452.192 kb on - strand, within ABZR87_RS02095 at 452.193 kb on + strand, within ABZR87_RS02095 at 452.193 kb on + strand, within ABZR87_RS02095 at 452.193 kb on + strand, within ABZR87_RS02095 at 452.193 kb on + strand, within ABZR87_RS02095 at 452.193 kb on + strand, within ABZR87_RS02095 at 452.193 kb on + strand, within ABZR87_RS02095 at 452.194 kb on - strand, within ABZR87_RS02095 at 452.194 kb on - strand, within ABZR87_RS02095 at 452.194 kb on - strand, within ABZR87_RS02095 at 452.194 kb on - strand, within ABZR87_RS02095 at 452.194 kb on - strand, within ABZR87_RS02095 at 452.211 kb on + strand, within ABZR87_RS02095 at 452.211 kb on + strand, within ABZR87_RS02095 at 452.212 kb on - strand, within ABZR87_RS02095 at 452.267 kb on - strand, within ABZR87_RS02095 at 452.377 kb on + strand at 452.377 kb on + strand at 452.377 kb on + strand at 452.378 kb on - strand at 452.378 kb on - strand at 452.378 kb on - strand at 452.422 kb on - strand at 452.422 kb on - strand at 452.452 kb on + strand at 452.452 kb on + strand at 452.918 kb on + strand, within ABZR87_RS02100 at 452.918 kb on + strand, within ABZR87_RS02100 at 452.918 kb on + strand, within ABZR87_RS02100 at 452.919 kb on - strand, within ABZR87_RS02100 at 452.919 kb on - strand, within ABZR87_RS02100 at 452.919 kb on - strand, within ABZR87_RS02100 at 453.241 kb on + strand at 453.278 kb on + strand at 453.278 kb on + strand at 453.298 kb on + strand at 453.298 kb on + strand at 453.298 kb on + strand at 453.298 kb on + strand at 453.299 kb on - strand at 453.299 kb on - strand at 453.299 kb on - strand at 453.299 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 451,365 - -0.7 451,365 - -0.4 451,469 + -0.9 451,469 + -1.1 451,469 + +1.7 451,469 + +1.4 451,469 + +0.5 451,469 + +1.3 451,469 + -0.4 451,469 + +0.3 451,470 - +0.9 451,470 - -0.3 451,470 - -0.1 451,470 - +1.6 451,470 - -1.2 451,471 + +0.1 451,472 - -0.5 451,537 - -1.0 451,553 + -0.4 451,553 + -0.9 451,553 + -1.7 451,553 + -0.3 451,553 + -0.1 451,554 - -0.5 451,554 - -0.0 451,554 - +0.1 451,602 - +0.5 451,653 + +0.7 451,782 + ABZR87_RS02095 0.17 -0.7 451,782 + ABZR87_RS02095 0.17 +0.4 451,783 - ABZR87_RS02095 0.17 -1.2 451,783 - ABZR87_RS02095 0.17 +0.5 452,181 + ABZR87_RS02095 0.68 +0.6 452,181 + ABZR87_RS02095 0.68 +1.4 452,181 + ABZR87_RS02095 0.68 +0.5 452,181 + ABZR87_RS02095 0.68 -0.3 452,181 + ABZR87_RS02095 0.68 -0.8 452,181 + ABZR87_RS02095 0.68 -2.0 452,181 + ABZR87_RS02095 0.68 -0.6 452,181 + ABZR87_RS02095 0.68 +0.8 452,181 + ABZR87_RS02095 0.68 +1.2 452,182 - ABZR87_RS02095 0.68 -0.6 452,182 - ABZR87_RS02095 0.68 +0.7 452,191 + ABZR87_RS02095 0.69 +1.7 452,191 + ABZR87_RS02095 0.69 -0.9 452,191 + ABZR87_RS02095 0.69 -0.5 452,191 + ABZR87_RS02095 0.69 +0.0 452,192 - ABZR87_RS02095 0.69 -0.6 452,192 - ABZR87_RS02095 0.69 -1.5 452,192 - ABZR87_RS02095 0.69 -1.0 452,192 - ABZR87_RS02095 0.69 +0.4 452,192 - ABZR87_RS02095 0.69 +1.1 452,193 + ABZR87_RS02095 0.70 +1.2 452,193 + ABZR87_RS02095 0.70 +0.1 452,193 + ABZR87_RS02095 0.70 -0.2 452,193 + ABZR87_RS02095 0.70 -1.0 452,193 + ABZR87_RS02095 0.70 -0.9 452,193 + ABZR87_RS02095 0.70 -1.0 452,194 - ABZR87_RS02095 0.70 +0.8 452,194 - ABZR87_RS02095 0.70 -1.4 452,194 - ABZR87_RS02095 0.70 -1.3 452,194 - ABZR87_RS02095 0.70 +1.9 452,194 - ABZR87_RS02095 0.70 -0.6 452,211 + ABZR87_RS02095 0.72 +0.2 452,211 + ABZR87_RS02095 0.72 +1.4 452,212 - ABZR87_RS02095 0.72 -0.0 452,267 - ABZR87_RS02095 0.79 +1.8 452,377 + -0.3 452,377 + +0.0 452,377 + -0.5 452,378 - -0.2 452,378 - +0.1 452,378 - -1.6 452,422 - +0.3 452,422 - -0.4 452,452 + -0.8 452,452 + +0.4 452,918 + ABZR87_RS02100 0.51 +0.2 452,918 + ABZR87_RS02100 0.51 -0.9 452,918 + ABZR87_RS02100 0.51 +1.1 452,919 - ABZR87_RS02100 0.52 +0.4 452,919 - ABZR87_RS02100 0.52 -0.8 452,919 - ABZR87_RS02100 0.52 +2.1 453,241 + +0.1 453,278 + -0.6 453,278 + +1.5 453,298 + +0.4 453,298 + +0.5 453,298 + +1.8 453,298 + +3.5 453,299 - +0.3 453,299 - -0.2 453,299 - +0.5 453,299 - +0.7
Or see this region's nucleotide sequence