Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR87_RS01270 and ABZR87_RS01275 are separated by 131 nucleotides ABZR87_RS01275 and ABZR87_RS01280 are separated by 2 nucleotides
ABZR87_RS01270: ABZR87_RS01270 - ATP-dependent DNA helicase RecG, at 263,475 to 265,622
_RS01270
ABZR87_RS01275: ABZR87_RS01275 - tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA, at 265,754 to 266,815
_RS01275
ABZR87_RS01280: ABZR87_RS01280 - tRNA guanosine(34) transglycosylase Tgt, at 266,818 to 267,969
_RS01280
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 264.845 kb on + strand, within ABZR87_RS01270 at 264.846 kb on - strand, within ABZR87_RS01270 at 264.846 kb on - strand, within ABZR87_RS01270 at 264.945 kb on + strand, within ABZR87_RS01270 at 265.103 kb on - strand, within ABZR87_RS01270 at 265.103 kb on - strand, within ABZR87_RS01270 at 265.103 kb on - strand, within ABZR87_RS01270 at 265.103 kb on - strand, within ABZR87_RS01270 at 265.103 kb on - strand, within ABZR87_RS01270 at 265.103 kb on - strand, within ABZR87_RS01270 at 265.132 kb on + strand, within ABZR87_RS01270 at 265.132 kb on + strand, within ABZR87_RS01270 at 265.282 kb on + strand, within ABZR87_RS01270 at 265.328 kb on + strand, within ABZR87_RS01270 at 265.328 kb on + strand, within ABZR87_RS01270 at 265.462 kb on + strand at 265.462 kb on + strand at 265.462 kb on + strand at 265.565 kb on + strand at 265.566 kb on - strand at 265.566 kb on - strand at 265.608 kb on - strand at 265.622 kb on + strand at 265.623 kb on - strand at 265.670 kb on + strand at 265.670 kb on + strand at 265.670 kb on + strand at 265.671 kb on - strand at 265.671 kb on - strand at 265.671 kb on - strand at 265.671 kb on - strand at 265.702 kb on + strand at 265.849 kb on - strand at 265.907 kb on + strand, within ABZR87_RS01275 at 265.907 kb on + strand, within ABZR87_RS01275 at 266.203 kb on + strand, within ABZR87_RS01275 at 266.204 kb on + strand, within ABZR87_RS01275 at 266.255 kb on + strand, within ABZR87_RS01275 at 266.255 kb on + strand, within ABZR87_RS01275 at 266.256 kb on - strand, within ABZR87_RS01275 at 266.256 kb on - strand, within ABZR87_RS01275 at 266.256 kb on - strand, within ABZR87_RS01275 at 266.256 kb on - strand, within ABZR87_RS01275 at 266.256 kb on - strand, within ABZR87_RS01275 at 266.256 kb on - strand, within ABZR87_RS01275 at 266.256 kb on - strand, within ABZR87_RS01275 at 266.446 kb on + strand, within ABZR87_RS01275 at 266.676 kb on + strand, within ABZR87_RS01275 at 266.714 kb on + strand at 266.714 kb on + strand at 266.714 kb on + strand at 266.714 kb on + strand at 266.714 kb on + strand at 266.715 kb on - strand at 266.754 kb on - strand at 266.827 kb on + strand at 266.827 kb on + strand at 266.828 kb on - strand at 266.842 kb on - strand at 266.923 kb on + strand at 266.923 kb on + strand at 266.923 kb on + strand at 266.923 kb on + strand at 266.924 kb on - strand at 266.924 kb on - strand at 266.924 kb on - strand at 267.262 kb on + strand, within ABZR87_RS01280 at 267.263 kb on - strand, within ABZR87_RS01280 at 267.485 kb on - strand, within ABZR87_RS01280 at 267.580 kb on + strand, within ABZR87_RS01280 at 267.580 kb on + strand, within ABZR87_RS01280 at 267.581 kb on - strand, within ABZR87_RS01280 at 267.581 kb on - strand, within ABZR87_RS01280 at 267.581 kb on - strand, within ABZR87_RS01280 at 267.726 kb on - strand, within ABZR87_RS01280 at 267.769 kb on + strand, within ABZR87_RS01280 at 267.770 kb on - strand, within ABZR87_RS01280 at 267.797 kb on - strand, within ABZR87_RS01280
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB remove 264,845 + ABZR87_RS01270 0.64 -2.3 264,846 - ABZR87_RS01270 0.64 -2.0 264,846 - ABZR87_RS01270 0.64 +0.4 264,945 + ABZR87_RS01270 0.68 -1.6 265,103 - ABZR87_RS01270 0.76 -1.4 265,103 - ABZR87_RS01270 0.76 -0.4 265,103 - ABZR87_RS01270 0.76 -1.1 265,103 - ABZR87_RS01270 0.76 +0.1 265,103 - ABZR87_RS01270 0.76 -0.1 265,103 - ABZR87_RS01270 0.76 -0.4 265,132 + ABZR87_RS01270 0.77 -1.8 265,132 + ABZR87_RS01270 0.77 -0.6 265,282 + ABZR87_RS01270 0.84 +1.3 265,328 + ABZR87_RS01270 0.86 +0.1 265,328 + ABZR87_RS01270 0.86 -1.7 265,462 + +0.1 265,462 + +0.7 265,462 + -2.2 265,565 + -0.1 265,566 - -1.1 265,566 - -1.5 265,608 - +0.3 265,622 + +0.7 265,623 - +0.8 265,670 + -1.2 265,670 + +0.7 265,670 + -1.0 265,671 - -0.4 265,671 - -0.1 265,671 - -0.5 265,671 - +0.1 265,702 + +0.1 265,849 - +1.7 265,907 + ABZR87_RS01275 0.14 -0.4 265,907 + ABZR87_RS01275 0.14 -1.2 266,203 + ABZR87_RS01275 0.42 -0.9 266,204 + ABZR87_RS01275 0.42 +1.0 266,255 + ABZR87_RS01275 0.47 +0.7 266,255 + ABZR87_RS01275 0.47 -2.1 266,256 - ABZR87_RS01275 0.47 -2.9 266,256 - ABZR87_RS01275 0.47 -2.6 266,256 - ABZR87_RS01275 0.47 -1.7 266,256 - ABZR87_RS01275 0.47 -1.4 266,256 - ABZR87_RS01275 0.47 -1.1 266,256 - ABZR87_RS01275 0.47 -0.2 266,256 - ABZR87_RS01275 0.47 -1.0 266,446 + ABZR87_RS01275 0.65 -2.2 266,676 + ABZR87_RS01275 0.87 -2.1 266,714 + +2.7 266,714 + +1.1 266,714 + -1.1 266,714 + -2.3 266,714 + -2.4 266,715 - -2.7 266,754 - -1.0 266,827 + +0.7 266,827 + +0.0 266,828 - +1.2 266,842 - +0.4 266,923 + -0.8 266,923 + -2.0 266,923 + -0.3 266,923 + +1.1 266,924 - +0.4 266,924 - -1.2 266,924 - +2.8 267,262 + ABZR87_RS01280 0.39 +0.1 267,263 - ABZR87_RS01280 0.39 -1.8 267,485 - ABZR87_RS01280 0.58 -0.6 267,580 + ABZR87_RS01280 0.66 -0.3 267,580 + ABZR87_RS01280 0.66 +1.1 267,581 - ABZR87_RS01280 0.66 +1.4 267,581 - ABZR87_RS01280 0.66 +0.8 267,581 - ABZR87_RS01280 0.66 -1.1 267,726 - ABZR87_RS01280 0.79 -1.1 267,769 + ABZR87_RS01280 0.83 -0.5 267,770 - ABZR87_RS01280 0.83 -1.9 267,797 - ABZR87_RS01280 0.85 -2.7
Or see this region's nucleotide sequence