Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS01030

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS01025 and ABZR87_RS01030 are separated by 25 nucleotidesABZR87_RS01030 and ABZR87_RS01035 are separated by 154 nucleotidesABZR87_RS01035 and ABZR87_RS01040 are separated by 7 nucleotides ABZR87_RS01025: ABZR87_RS01025 - histidine ammonia-lyase, at 203,817 to 205,373 _RS01025 ABZR87_RS01030: ABZR87_RS01030 - urocanate hydratase, at 205,399 to 207,117 _RS01030 ABZR87_RS01035: ABZR87_RS01035 - histidine utilization repressor, at 207,272 to 207,985 _RS01035 ABZR87_RS01040: ABZR87_RS01040 - ABC transporter permease subunit, at 207,993 to 208,862 _RS01040 Position (kb) 205 206 207 208Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 204.403 kb on + strand, within ABZR87_RS01025at 204.403 kb on + strand, within ABZR87_RS01025at 204.404 kb on - strand, within ABZR87_RS01025at 204.512 kb on + strand, within ABZR87_RS01025at 204.512 kb on + strand, within ABZR87_RS01025at 204.513 kb on - strand, within ABZR87_RS01025at 204.513 kb on - strand, within ABZR87_RS01025at 204.514 kb on + strand, within ABZR87_RS01025at 204.514 kb on + strand, within ABZR87_RS01025at 204.514 kb on + strand, within ABZR87_RS01025at 204.515 kb on - strand, within ABZR87_RS01025at 204.515 kb on - strand, within ABZR87_RS01025at 204.586 kb on + strand, within ABZR87_RS01025at 205.373 kb on + strandat 205.373 kb on + strandat 205.373 kb on + strandat 205.373 kb on + strandat 205.373 kb on + strandat 205.374 kb on - strandat 205.374 kb on - strandat 205.374 kb on - strandat 205.374 kb on - strandat 205.395 kb on + strandat 205.396 kb on - strandat 205.396 kb on - strandat 205.396 kb on - strandat 205.396 kb on - strandat 205.396 kb on - strandat 205.400 kb on + strandat 205.401 kb on - strandat 205.401 kb on - strandat 205.577 kb on + strand, within ABZR87_RS01030at 205.578 kb on - strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.949 kb on + strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 205.950 kb on - strand, within ABZR87_RS01030at 206.024 kb on + strand, within ABZR87_RS01030at 206.024 kb on + strand, within ABZR87_RS01030at 206.024 kb on + strand, within ABZR87_RS01030at 206.024 kb on + strand, within ABZR87_RS01030at 206.025 kb on - strand, within ABZR87_RS01030at 206.025 kb on - strand, within ABZR87_RS01030at 206.102 kb on + strand, within ABZR87_RS01030at 206.103 kb on - strand, within ABZR87_RS01030at 206.256 kb on - strand, within ABZR87_RS01030at 206.431 kb on + strand, within ABZR87_RS01030at 206.434 kb on - strand, within ABZR87_RS01030at 206.434 kb on - strand, within ABZR87_RS01030at 206.464 kb on - strand, within ABZR87_RS01030at 206.464 kb on - strand, within ABZR87_RS01030at 206.606 kb on + strand, within ABZR87_RS01030at 206.606 kb on + strand, within ABZR87_RS01030at 206.606 kb on + strand, within ABZR87_RS01030at 206.607 kb on - strand, within ABZR87_RS01030at 206.607 kb on - strand, within ABZR87_RS01030at 206.639 kb on + strand, within ABZR87_RS01030at 206.639 kb on + strand, within ABZR87_RS01030at 206.640 kb on - strand, within ABZR87_RS01030at 206.672 kb on + strand, within ABZR87_RS01030at 206.672 kb on + strand, within ABZR87_RS01030at 206.672 kb on + strand, within ABZR87_RS01030at 206.673 kb on - strand, within ABZR87_RS01030at 206.673 kb on - strand, within ABZR87_RS01030at 206.702 kb on + strand, within ABZR87_RS01030at 206.702 kb on + strand, within ABZR87_RS01030at 206.703 kb on - strand, within ABZR87_RS01030at 206.703 kb on - strand, within ABZR87_RS01030at 206.703 kb on - strand, within ABZR87_RS01030at 206.934 kb on - strand, within ABZR87_RS01030at 207.071 kb on + strandat 207.072 kb on - strandat 207.169 kb on + strandat 207.198 kb on + strandat 207.198 kb on + strandat 207.199 kb on - strandat 207.199 kb on - strandat 207.199 kb on - strandat 207.506 kb on + strand, within ABZR87_RS01035at 207.740 kb on + strand, within ABZR87_RS01035at 207.740 kb on + strand, within ABZR87_RS01035at 207.740 kb on + strand, within ABZR87_RS01035at 207.741 kb on - strand, within ABZR87_RS01035at 207.741 kb on - strand, within ABZR87_RS01035at 207.741 kb on - strand, within ABZR87_RS01035at 207.741 kb on - strand, within ABZR87_RS01035at 207.780 kb on - strand, within ABZR87_RS01035at 207.780 kb on - strand, within ABZR87_RS01035at 207.780 kb on - strand, within ABZR87_RS01035at 207.816 kb on - strand, within ABZR87_RS01035

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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204,403 + ABZR87_RS01025 0.38 +0.2
204,403 + ABZR87_RS01025 0.38 +0.1
204,404 - ABZR87_RS01025 0.38 +0.5
204,512 + ABZR87_RS01025 0.45 +0.6
204,512 + ABZR87_RS01025 0.45 +1.7
204,513 - ABZR87_RS01025 0.45 -0.8
204,513 - ABZR87_RS01025 0.45 +0.1
204,514 + ABZR87_RS01025 0.45 +1.0
204,514 + ABZR87_RS01025 0.45 -2.6
204,514 + ABZR87_RS01025 0.45 -0.5
204,515 - ABZR87_RS01025 0.45 -1.0
204,515 - ABZR87_RS01025 0.45 -0.1
204,586 + ABZR87_RS01025 0.49 -0.0
205,373 + +0.5
205,373 + -0.0
205,373 + -0.4
205,373 + -0.8
205,373 + +0.1
205,374 - -1.9
205,374 - -1.1
205,374 - +0.5
205,374 - -0.0
205,395 + +0.4
205,396 - -1.8
205,396 - -1.0
205,396 - +0.1
205,396 - +1.1
205,396 - -0.4
205,400 + +1.8
205,401 - +0.2
205,401 - -0.6
205,577 + ABZR87_RS01030 0.10 +1.0
205,578 - ABZR87_RS01030 0.10 -0.3
205,949 + ABZR87_RS01030 0.32 +1.3
205,949 + ABZR87_RS01030 0.32 +0.0
205,949 + ABZR87_RS01030 0.32 -0.1
205,949 + ABZR87_RS01030 0.32 -0.1
205,949 + ABZR87_RS01030 0.32 +0.6
205,949 + ABZR87_RS01030 0.32 -0.2
205,949 + ABZR87_RS01030 0.32 +0.1
205,949 + ABZR87_RS01030 0.32 -1.2
205,949 + ABZR87_RS01030 0.32 -1.5
205,949 + ABZR87_RS01030 0.32 +1.3
205,950 - ABZR87_RS01030 0.32 +3.7
205,950 - ABZR87_RS01030 0.32 +3.7
205,950 - ABZR87_RS01030 0.32 +0.2
205,950 - ABZR87_RS01030 0.32 -1.3
205,950 - ABZR87_RS01030 0.32 -0.2
206,024 + ABZR87_RS01030 0.36 +1.7
206,024 + ABZR87_RS01030 0.36 +1.3
206,024 + ABZR87_RS01030 0.36 -1.3
206,024 + ABZR87_RS01030 0.36 -1.1
206,025 - ABZR87_RS01030 0.36 +0.5
206,025 - ABZR87_RS01030 0.36 +0.0
206,102 + ABZR87_RS01030 0.41 +1.7
206,103 - ABZR87_RS01030 0.41 -1.9
206,256 - ABZR87_RS01030 0.50 +0.4
206,431 + ABZR87_RS01030 0.60 -0.2
206,434 - ABZR87_RS01030 0.60 +2.0
206,434 - ABZR87_RS01030 0.60 +2.7
206,464 - ABZR87_RS01030 0.62 +0.1
206,464 - ABZR87_RS01030 0.62 -0.1
206,606 + ABZR87_RS01030 0.70 -1.3
206,606 + ABZR87_RS01030 0.70 -0.9
206,606 + ABZR87_RS01030 0.70 +1.4
206,607 - ABZR87_RS01030 0.70 +4.5
206,607 - ABZR87_RS01030 0.70 +0.1
206,639 + ABZR87_RS01030 0.72 -0.4
206,639 + ABZR87_RS01030 0.72 -0.4
206,640 - ABZR87_RS01030 0.72 -0.2
206,672 + ABZR87_RS01030 0.74 +1.5
206,672 + ABZR87_RS01030 0.74 +0.6
206,672 + ABZR87_RS01030 0.74 -0.2
206,673 - ABZR87_RS01030 0.74 +1.1
206,673 - ABZR87_RS01030 0.74 -0.4
206,702 + ABZR87_RS01030 0.76 +1.1
206,702 + ABZR87_RS01030 0.76 +0.6
206,703 - ABZR87_RS01030 0.76 +0.6
206,703 - ABZR87_RS01030 0.76 -0.7
206,703 - ABZR87_RS01030 0.76 -0.2
206,934 - ABZR87_RS01030 0.89 +0.6
207,071 + -0.6
207,072 - +0.4
207,169 + +1.1
207,198 + +0.4
207,198 + -0.7
207,199 - +0.7
207,199 - -0.2
207,199 - -0.7
207,506 + ABZR87_RS01035 0.33 -2.3
207,740 + ABZR87_RS01035 0.66 -1.6
207,740 + ABZR87_RS01035 0.66 -2.6
207,740 + ABZR87_RS01035 0.66 -2.3
207,741 - ABZR87_RS01035 0.66 -2.9
207,741 - ABZR87_RS01035 0.66 -2.3
207,741 - ABZR87_RS01035 0.66 -0.4
207,741 - ABZR87_RS01035 0.66 -2.1
207,780 - ABZR87_RS01035 0.71 -2.9
207,780 - ABZR87_RS01035 0.71 -0.2
207,780 - ABZR87_RS01035 0.71 -2.5
207,816 - ABZR87_RS01035 0.76 -2.2

Or see this region's nucleotide sequence