Strain Fitness in Ralstonia sp. UNC404CL21Col around ABZR87_RS00755

Experiment: Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABZR87_RS00750 and ABZR87_RS00755 are separated by 119 nucleotidesABZR87_RS00755 and ABZR87_RS00760 are separated by 0 nucleotidesABZR87_RS00760 and ABZR87_RS00765 are separated by 3 nucleotides ABZR87_RS00750: ABZR87_RS00750 - LysR family transcriptional regulator, at 151,154 to 152,047 _RS00750 ABZR87_RS00755: ABZR87_RS00755 - bile acid:sodium symporter family protein, at 152,167 to 153,198 _RS00755 ABZR87_RS00760: ABZR87_RS00760 - GNAT family N-acetyltransferase, at 153,199 to 153,744 _RS00760 ABZR87_RS00765: ABZR87_RS00765 - N-acetylmuramoyl-L-alanine amidase, at 153,748 to 155,271 _RS00765 Position (kb) 152 153 154Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 151.390 kb on + strand, within ABZR87_RS00750at 151.390 kb on + strand, within ABZR87_RS00750at 151.390 kb on + strand, within ABZR87_RS00750at 151.390 kb on + strand, within ABZR87_RS00750at 151.391 kb on - strand, within ABZR87_RS00750at 151.614 kb on - strand, within ABZR87_RS00750at 151.716 kb on + strand, within ABZR87_RS00750at 151.716 kb on + strand, within ABZR87_RS00750at 151.716 kb on + strand, within ABZR87_RS00750at 151.716 kb on + strand, within ABZR87_RS00750at 151.716 kb on + strand, within ABZR87_RS00750at 151.716 kb on + strand, within ABZR87_RS00750at 151.716 kb on + strand, within ABZR87_RS00750at 151.717 kb on - strand, within ABZR87_RS00750at 151.717 kb on - strand, within ABZR87_RS00750at 151.717 kb on - strand, within ABZR87_RS00750at 152.086 kb on - strandat 152.095 kb on - strandat 152.110 kb on + strandat 152.111 kb on - strandat 152.117 kb on + strandat 152.142 kb on + strandat 152.143 kb on - strandat 152.143 kb on - strandat 152.146 kb on + strandat 152.147 kb on - strandat 152.147 kb on - strandat 152.147 kb on - strandat 152.183 kb on + strandat 152.183 kb on + strandat 152.183 kb on + strandat 152.184 kb on - strandat 152.184 kb on - strandat 152.184 kb on - strandat 152.500 kb on + strand, within ABZR87_RS00755at 152.500 kb on + strand, within ABZR87_RS00755at 152.500 kb on + strand, within ABZR87_RS00755at 152.501 kb on - strand, within ABZR87_RS00755at 152.501 kb on - strand, within ABZR87_RS00755at 152.501 kb on - strand, within ABZR87_RS00755at 152.863 kb on + strand, within ABZR87_RS00755at 152.864 kb on - strand, within ABZR87_RS00755at 153.091 kb on + strand, within ABZR87_RS00755at 153.091 kb on + strand, within ABZR87_RS00755at 153.091 kb on + strand, within ABZR87_RS00755at 153.092 kb on - strand, within ABZR87_RS00755at 153.092 kb on - strand, within ABZR87_RS00755at 153.092 kb on - strand, within ABZR87_RS00755at 153.092 kb on - strand, within ABZR87_RS00755at 153.137 kb on - strandat 153.137 kb on - strandat 153.137 kb on - strandat 153.245 kb on + strandat 153.245 kb on + strandat 153.245 kb on + strandat 153.245 kb on + strandat 153.245 kb on + strandat 153.246 kb on - strandat 153.246 kb on - strandat 153.323 kb on + strand, within ABZR87_RS00760at 153.323 kb on + strand, within ABZR87_RS00760at 153.323 kb on + strand, within ABZR87_RS00760at 153.323 kb on + strand, within ABZR87_RS00760at 153.323 kb on + strand, within ABZR87_RS00760at 153.323 kb on + strand, within ABZR87_RS00760at 153.324 kb on - strand, within ABZR87_RS00760at 153.324 kb on - strand, within ABZR87_RS00760at 153.324 kb on - strand, within ABZR87_RS00760at 153.353 kb on + strand, within ABZR87_RS00760at 153.681 kb on + strand, within ABZR87_RS00760at 154.116 kb on - strand, within ABZR87_RS00765

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Sorghum_bicolor; PlantTreatment=None; Sample=soil; GrowthSubstrate=calcine_clay; Collection=outgrowth_in_LB
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151,390 + ABZR87_RS00750 0.26 -0.5
151,390 + ABZR87_RS00750 0.26 -0.0
151,390 + ABZR87_RS00750 0.26 +1.0
151,390 + ABZR87_RS00750 0.26 +0.3
151,391 - ABZR87_RS00750 0.27 +0.3
151,614 - ABZR87_RS00750 0.51 -0.1
151,716 + ABZR87_RS00750 0.63 -0.1
151,716 + ABZR87_RS00750 0.63 +0.5
151,716 + ABZR87_RS00750 0.63 -0.3
151,716 + ABZR87_RS00750 0.63 +1.6
151,716 + ABZR87_RS00750 0.63 -1.7
151,716 + ABZR87_RS00750 0.63 -2.2
151,716 + ABZR87_RS00750 0.63 -0.8
151,717 - ABZR87_RS00750 0.63 +0.5
151,717 - ABZR87_RS00750 0.63 +0.8
151,717 - ABZR87_RS00750 0.63 +0.4
152,086 - +0.4
152,095 - -0.7
152,110 + -0.0
152,111 - -0.7
152,117 + -1.3
152,142 + -1.9
152,143 - +5.1
152,143 - -0.2
152,146 + -0.6
152,147 - +0.4
152,147 - +0.5
152,147 - -0.4
152,183 + +0.1
152,183 + -0.3
152,183 + -0.8
152,184 - -0.3
152,184 - -0.6
152,184 - -0.8
152,500 + ABZR87_RS00755 0.32 +0.1
152,500 + ABZR87_RS00755 0.32 +0.1
152,500 + ABZR87_RS00755 0.32 +0.2
152,501 - ABZR87_RS00755 0.32 +0.5
152,501 - ABZR87_RS00755 0.32 +1.6
152,501 - ABZR87_RS00755 0.32 -1.3
152,863 + ABZR87_RS00755 0.67 +1.4
152,864 - ABZR87_RS00755 0.68 +0.9
153,091 + ABZR87_RS00755 0.90 +0.0
153,091 + ABZR87_RS00755 0.90 -0.6
153,091 + ABZR87_RS00755 0.90 +0.3
153,092 - ABZR87_RS00755 0.90 +0.1
153,092 - ABZR87_RS00755 0.90 -1.0
153,092 - ABZR87_RS00755 0.90 +1.3
153,092 - ABZR87_RS00755 0.90 -1.2
153,137 - +0.8
153,137 - -0.1
153,137 - -0.3
153,245 + -0.2
153,245 + +0.6
153,245 + -1.6
153,245 + -0.3
153,245 + -0.3
153,246 - -1.0
153,246 - -0.6
153,323 + ABZR87_RS00760 0.23 +1.9
153,323 + ABZR87_RS00760 0.23 -0.2
153,323 + ABZR87_RS00760 0.23 +1.7
153,323 + ABZR87_RS00760 0.23 -0.3
153,323 + ABZR87_RS00760 0.23 -0.5
153,323 + ABZR87_RS00760 0.23 +0.8
153,324 - ABZR87_RS00760 0.23 +0.9
153,324 - ABZR87_RS00760 0.23 -0.7
153,324 - ABZR87_RS00760 0.23 -0.5
153,353 + ABZR87_RS00760 0.28 -0.1
153,681 + ABZR87_RS00760 0.88 +0.0
154,116 - ABZR87_RS00765 0.24 -0.0

Or see this region's nucleotide sequence