Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3793

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3791 and Rru_A3792 are separated by 169 nucleotidesRru_A3792 and Rru_A3793 overlap by 11 nucleotidesRru_A3793 and Rru_A3794 are separated by 155 nucleotides Rru_A3791: Rru_A3791 - hypothetical protein (NCBI), at 4,342,070 to 4,342,381 _A3791 Rru_A3792: Rru_A3792 - hypothetical protein (NCBI), at 4,342,551 to 4,343,039 _A3792 Rru_A3793: Rru_A3793 - molybdopterin biosynthesis protein (NCBI), at 4,343,029 to 4,343,844 _A3793 Rru_A3794: Rru_A3794 - Cysteine synthase (NCBI), at 4,344,000 to 4,345,019 _A3794 Position (kb) 4343 4344Strain fitness (log2 ratio) -2 -1 0 1at 4342.481 kb on - strandat 4342.541 kb on - strandat 4342.541 kb on - strandat 4342.546 kb on + strandat 4342.546 kb on + strandat 4342.546 kb on + strandat 4342.547 kb on - strandat 4342.547 kb on - strandat 4342.552 kb on + strandat 4342.552 kb on + strandat 4342.553 kb on - strandat 4342.553 kb on - strandat 4342.553 kb on - strandat 4342.553 kb on - strandat 4342.553 kb on - strandat 4342.553 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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4,342,481 - -0.5
4,342,541 - +0.5
4,342,541 - -0.1
4,342,546 + -0.1
4,342,546 + +0.3
4,342,546 + -0.1
4,342,547 - -0.1
4,342,547 - +1.7
4,342,552 + -0.1
4,342,552 + -0.1
4,342,553 - -0.1
4,342,553 - -1.1
4,342,553 - -0.9
4,342,553 - -2.4
4,342,553 - -1.4
4,342,553 - -0.3

Or see this region's nucleotide sequence