Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3651

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3649 and Rru_A3650 are separated by 27 nucleotidesRru_A3650 and Rru_A3651 are separated by 115 nucleotidesRru_A3651 and Rru_A3652 overlap by 4 nucleotidesRru_A3652 and Rru_A3653 overlap by 4 nucleotides Rru_A3649: Rru_A3649 - 2',5' RNA ligase (NCBI), at 4,188,468 to 4,189,067 _A3649 Rru_A3650: Rru_A3650 - Lipolytic enzyme, G-D-S-L (NCBI), at 4,189,095 to 4,189,700 _A3650 Rru_A3651: Rru_A3651 - ABC transporter component (NCBI), at 4,189,816 to 4,190,529 _A3651 Rru_A3652: Rru_A3652 - hypothetical protein (NCBI), at 4,190,526 to 4,191,257 _A3652 Rru_A3653: Rru_A3653 - Protein of unknown function DUF214 (NCBI), at 4,191,254 to 4,193,797 _A3653 Position (kb) 4189 4190 4191Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 4189.081 kb on + strandat 4189.082 kb on - strandat 4189.082 kb on - strandat 4189.086 kb on + strandat 4189.086 kb on + strandat 4189.087 kb on - strandat 4189.096 kb on + strandat 4189.096 kb on + strandat 4189.097 kb on - strandat 4189.250 kb on - strand, within Rru_A3650at 4189.309 kb on + strand, within Rru_A3650at 4189.309 kb on + strand, within Rru_A3650at 4189.310 kb on - strand, within Rru_A3650at 4189.310 kb on - strand, within Rru_A3650at 4189.622 kb on - strand, within Rru_A3650at 4189.700 kb on + strandat 4189.700 kb on + strandat 4189.701 kb on - strandat 4189.701 kb on - strandat 4189.701 kb on - strandat 4189.825 kb on - strandat 4189.842 kb on + strandat 4189.842 kb on + strandat 4189.842 kb on + strandat 4189.842 kb on + strandat 4189.843 kb on - strandat 4189.843 kb on - strandat 4189.843 kb on - strandat 4190.412 kb on + strand, within Rru_A3651at 4190.412 kb on + strand, within Rru_A3651at 4190.412 kb on + strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.413 kb on - strand, within Rru_A3651at 4190.693 kb on + strand, within Rru_A3652at 4190.693 kb on + strand, within Rru_A3652at 4190.693 kb on + strand, within Rru_A3652at 4190.932 kb on - strand, within Rru_A3652at 4191.470 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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4,189,081 + -1.7
4,189,082 - -0.1
4,189,082 - -2.1
4,189,086 + +0.9
4,189,086 + -1.3
4,189,087 - +1.9
4,189,096 + -0.1
4,189,096 + -0.1
4,189,097 - +1.3
4,189,250 - Rru_A3650 0.26 -0.1
4,189,309 + Rru_A3650 0.35 -0.1
4,189,309 + Rru_A3650 0.35 -1.1
4,189,310 - Rru_A3650 0.35 +0.9
4,189,310 - Rru_A3650 0.35 -0.1
4,189,622 - Rru_A3650 0.87 -1.1
4,189,700 + +0.5
4,189,700 + -0.1
4,189,701 - +0.5
4,189,701 - -1.7
4,189,701 - -1.7
4,189,825 - -0.1
4,189,842 + +0.9
4,189,842 + -1.5
4,189,842 + -4.2
4,189,842 + -1.8
4,189,843 - -1.0
4,189,843 - -0.1
4,189,843 - -0.1
4,190,412 + Rru_A3651 0.83 -1.6
4,190,412 + Rru_A3651 0.83 -1.7
4,190,412 + Rru_A3651 0.83 -1.7
4,190,413 - Rru_A3651 0.84 -2.7
4,190,413 - Rru_A3651 0.84 -3.5
4,190,413 - Rru_A3651 0.84 -1.5
4,190,413 - Rru_A3651 0.84 -0.7
4,190,413 - Rru_A3651 0.84 -2.1
4,190,413 - Rru_A3651 0.84 -1.7
4,190,693 + Rru_A3652 0.23 -1.3
4,190,693 + Rru_A3652 0.23 +0.9
4,190,693 + Rru_A3652 0.23 -0.1
4,190,932 - Rru_A3652 0.55 +1.1
4,191,470 + +1.8

Or see this region's nucleotide sequence