Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3649 and Rru_A3650 are separated by 27 nucleotides Rru_A3650 and Rru_A3651 are separated by 115 nucleotides Rru_A3651 and Rru_A3652 overlap by 4 nucleotides Rru_A3652 and Rru_A3653 overlap by 4 nucleotides
Rru_A3649: Rru_A3649 - 2',5' RNA ligase (NCBI), at 4,188,468 to 4,189,067
_A3649
Rru_A3650: Rru_A3650 - Lipolytic enzyme, G-D-S-L (NCBI), at 4,189,095 to 4,189,700
_A3650
Rru_A3651: Rru_A3651 - ABC transporter component (NCBI), at 4,189,816 to 4,190,529
_A3651
Rru_A3652: Rru_A3652 - hypothetical protein (NCBI), at 4,190,526 to 4,191,257
_A3652
Rru_A3653: Rru_A3653 - Protein of unknown function DUF214 (NCBI), at 4,191,254 to 4,193,797
_A3653
Position (kb)
4189
4190
4191 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 4189.081 kb on + strand at 4189.082 kb on - strand at 4189.082 kb on - strand at 4189.086 kb on + strand at 4189.086 kb on + strand at 4189.087 kb on - strand at 4189.096 kb on + strand at 4189.096 kb on + strand at 4189.097 kb on - strand at 4189.250 kb on - strand, within Rru_A3650 at 4189.309 kb on + strand, within Rru_A3650 at 4189.309 kb on + strand, within Rru_A3650 at 4189.310 kb on - strand, within Rru_A3650 at 4189.310 kb on - strand, within Rru_A3650 at 4189.622 kb on - strand, within Rru_A3650 at 4189.700 kb on + strand at 4189.700 kb on + strand at 4189.701 kb on - strand at 4189.701 kb on - strand at 4189.701 kb on - strand at 4189.825 kb on - strand at 4189.842 kb on + strand at 4189.842 kb on + strand at 4189.842 kb on + strand at 4189.842 kb on + strand at 4189.843 kb on - strand at 4189.843 kb on - strand at 4189.843 kb on - strand at 4190.412 kb on + strand, within Rru_A3651 at 4190.412 kb on + strand, within Rru_A3651 at 4190.412 kb on + strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.413 kb on - strand, within Rru_A3651 at 4190.693 kb on + strand, within Rru_A3652 at 4190.693 kb on + strand, within Rru_A3652 at 4190.693 kb on + strand, within Rru_A3652 at 4190.932 kb on - strand, within Rru_A3652 at 4191.470 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 4,189,081 + -1.7 4,189,082 - -0.1 4,189,082 - -2.1 4,189,086 + +0.9 4,189,086 + -1.3 4,189,087 - +1.9 4,189,096 + -0.1 4,189,096 + -0.1 4,189,097 - +1.3 4,189,250 - Rru_A3650 0.26 -0.1 4,189,309 + Rru_A3650 0.35 -0.1 4,189,309 + Rru_A3650 0.35 -1.1 4,189,310 - Rru_A3650 0.35 +0.9 4,189,310 - Rru_A3650 0.35 -0.1 4,189,622 - Rru_A3650 0.87 -1.1 4,189,700 + +0.5 4,189,700 + -0.1 4,189,701 - +0.5 4,189,701 - -1.7 4,189,701 - -1.7 4,189,825 - -0.1 4,189,842 + +0.9 4,189,842 + -1.5 4,189,842 + -4.2 4,189,842 + -1.8 4,189,843 - -1.0 4,189,843 - -0.1 4,189,843 - -0.1 4,190,412 + Rru_A3651 0.83 -1.6 4,190,412 + Rru_A3651 0.83 -1.7 4,190,412 + Rru_A3651 0.83 -1.7 4,190,413 - Rru_A3651 0.84 -2.7 4,190,413 - Rru_A3651 0.84 -3.5 4,190,413 - Rru_A3651 0.84 -1.5 4,190,413 - Rru_A3651 0.84 -0.7 4,190,413 - Rru_A3651 0.84 -2.1 4,190,413 - Rru_A3651 0.84 -1.7 4,190,693 + Rru_A3652 0.23 -1.3 4,190,693 + Rru_A3652 0.23 +0.9 4,190,693 + Rru_A3652 0.23 -0.1 4,190,932 - Rru_A3652 0.55 +1.1 4,191,470 + +1.8
Or see this region's nucleotide sequence