Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3637

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3636 and Rru_A3637 are separated by 264 nucleotidesRru_A3637 and Rru_A3638 are separated by 89 nucleotidesRru_A3638 and Rru_A3639 overlap by 19 nucleotides Rru_A3636: Rru_A3636 - hypothetical protein (NCBI), at 4,176,516 to 4,177,910 _A3636 Rru_A3637: Rru_A3637 - GTP cyclohydrolase II (NCBI), at 4,178,175 to 4,179,329 _A3637 Rru_A3638: Rru_A3638 - Two component Transcriptional regulator, Winged helix family (NCBI), at 4,179,419 to 4,180,231 _A3638 Rru_A3639: Rru_A3639 - Putative oxygen-independent coproporphyrinogen III oxidase (NCBI), at 4,180,213 to 4,181,457 _A3639 Position (kb) 4178 4179 4180Strain fitness (log2 ratio) -2 -1 0 1 2at 4177.231 kb on + strand, within Rru_A3636at 4177.232 kb on - strand, within Rru_A3636at 4177.379 kb on - strand, within Rru_A3636at 4177.379 kb on - strand, within Rru_A3636at 4177.561 kb on + strand, within Rru_A3636at 4178.100 kb on + strandat 4178.100 kb on + strandat 4178.101 kb on - strandat 4178.163 kb on + strandat 4178.164 kb on - strandat 4178.164 kb on - strandat 4179.396 kb on + strandat 4179.396 kb on + strandat 4179.401 kb on - strandat 4179.401 kb on - strandat 4179.401 kb on - strandat 4179.401 kb on - strandat 4179.401 kb on - strandat 4179.401 kb on - strandat 4179.474 kb on + strandat 4179.474 kb on + strandat 4179.474 kb on + strandat 4179.474 kb on + strandat 4179.474 kb on + strandat 4179.475 kb on - strandat 4179.475 kb on - strandat 4179.475 kb on - strandat 4179.475 kb on - strandat 4179.475 kb on - strandat 4179.475 kb on - strandat 4179.475 kb on - strandat 4179.475 kb on - strandat 4179.475 kb on - strandat 4179.478 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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4,177,231 + Rru_A3636 0.51 -2.1
4,177,232 - Rru_A3636 0.51 -1.5
4,177,379 - Rru_A3636 0.62 -0.1
4,177,379 - Rru_A3636 0.62 -0.1
4,177,561 + Rru_A3636 0.75 -0.1
4,178,100 + -0.1
4,178,100 + -2.1
4,178,101 - -0.1
4,178,163 + +0.9
4,178,164 - -2.4
4,178,164 - -0.1
4,179,396 + -0.1
4,179,396 + -0.1
4,179,401 - -1.7
4,179,401 - -0.9
4,179,401 - +1.9
4,179,401 - -0.1
4,179,401 - -0.1
4,179,401 - -0.1
4,179,474 + -1.1
4,179,474 + -0.7
4,179,474 + -1.7
4,179,474 + -0.1
4,179,474 + -2.4
4,179,475 - -0.1
4,179,475 - -0.1
4,179,475 - -2.1
4,179,475 - -1.7
4,179,475 - -0.1
4,179,475 - -1.4
4,179,475 - -1.1
4,179,475 - -1.1
4,179,475 - -0.1
4,179,478 + -0.4

Or see this region's nucleotide sequence