Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3587

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3586 and Rru_A3587 are separated by 114 nucleotidesRru_A3587 and Rru_A3588 are separated by 464 nucleotides Rru_A3586: Rru_A3586 - Peptidoglycan-binding LysM (NCBI), at 4,129,234 to 4,130,292 _A3586 Rru_A3587: Rru_A3587 - hypothetical protein (NCBI), at 4,130,407 to 4,131,249 _A3587 Rru_A3588: Rru_A3588 - Cytochrome B561 (NCBI), at 4,131,714 to 4,132,463 _A3588 Position (kb) 4130 4131 4132Strain fitness (log2 ratio) -3 -2 -1 0 1at 4129.527 kb on + strand, within Rru_A3586at 4129.527 kb on + strand, within Rru_A3586at 4129.527 kb on + strand, within Rru_A3586at 4129.527 kb on + strand, within Rru_A3586at 4129.528 kb on - strand, within Rru_A3586at 4129.530 kb on - strand, within Rru_A3586at 4129.530 kb on - strand, within Rru_A3586at 4129.612 kb on - strand, within Rru_A3586at 4129.620 kb on - strand, within Rru_A3586at 4129.620 kb on - strand, within Rru_A3586at 4129.682 kb on + strand, within Rru_A3586at 4129.682 kb on + strand, within Rru_A3586at 4129.683 kb on - strand, within Rru_A3586at 4130.053 kb on - strand, within Rru_A3586at 4130.328 kb on + strandat 4130.329 kb on - strandat 4130.329 kb on - strandat 4130.329 kb on - strandat 4130.512 kb on - strand, within Rru_A3587at 4130.512 kb on - strand, within Rru_A3587at 4130.512 kb on - strand, within Rru_A3587at 4130.601 kb on + strand, within Rru_A3587at 4131.284 kb on + strandat 4131.284 kb on + strandat 4131.284 kb on + strandat 4131.284 kb on + strandat 4131.285 kb on - strandat 4131.288 kb on + strandat 4131.289 kb on - strandat 4131.560 kb on - strandat 4131.710 kb on + strandat 4131.710 kb on + strandat 4131.711 kb on - strandat 4131.711 kb on - strandat 4131.905 kb on + strand, within Rru_A3588at 4131.905 kb on + strand, within Rru_A3588at 4131.905 kb on + strand, within Rru_A3588at 4131.905 kb on + strand, within Rru_A3588at 4131.906 kb on - strand, within Rru_A3588at 4131.906 kb on - strand, within Rru_A3588at 4131.942 kb on + strand, within Rru_A3588at 4131.942 kb on + strand, within Rru_A3588at 4132.023 kb on + strand, within Rru_A3588at 4132.024 kb on - strand, within Rru_A3588at 4132.024 kb on - strand, within Rru_A3588at 4132.220 kb on + strand, within Rru_A3588at 4132.220 kb on + strand, within Rru_A3588at 4132.220 kb on + strand, within Rru_A3588at 4132.220 kb on + strand, within Rru_A3588at 4132.220 kb on + strand, within Rru_A3588at 4132.220 kb on + strand, within Rru_A3588at 4132.221 kb on - strand, within Rru_A3588at 4132.221 kb on - strand, within Rru_A3588at 4132.221 kb on - strand, within Rru_A3588at 4132.238 kb on + strand, within Rru_A3588at 4132.239 kb on - strand, within Rru_A3588at 4132.239 kb on - strand, within Rru_A3588

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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4,129,527 + Rru_A3586 0.28 +0.0
4,129,527 + Rru_A3586 0.28 +0.0
4,129,527 + Rru_A3586 0.28 +0.0
4,129,527 + Rru_A3586 0.28 +0.0
4,129,528 - Rru_A3586 0.28 -2.0
4,129,530 - Rru_A3586 0.28 -2.0
4,129,530 - Rru_A3586 0.28 -1.3
4,129,612 - Rru_A3586 0.36 -2.2
4,129,620 - Rru_A3586 0.36 +0.0
4,129,620 - Rru_A3586 0.36 -3.3
4,129,682 + Rru_A3586 0.42 +0.0
4,129,682 + Rru_A3586 0.42 +0.0
4,129,683 - Rru_A3586 0.42 +0.3
4,130,053 - Rru_A3586 0.77 +0.0
4,130,328 + -1.3
4,130,329 - -0.4
4,130,329 - +0.0
4,130,329 - -1.8
4,130,512 - Rru_A3587 0.12 -2.3
4,130,512 - Rru_A3587 0.12 +0.0
4,130,512 - Rru_A3587 0.12 -2.1
4,130,601 + Rru_A3587 0.23 -1.0
4,131,284 + -3.3
4,131,284 + -1.4
4,131,284 + +0.0
4,131,284 + -3.1
4,131,285 - -2.0
4,131,288 + +0.0
4,131,289 - -1.6
4,131,560 - -2.6
4,131,710 + -1.4
4,131,710 + -2.3
4,131,711 - -2.0
4,131,711 - -2.5
4,131,905 + Rru_A3588 0.25 -0.6
4,131,905 + Rru_A3588 0.25 -0.0
4,131,905 + Rru_A3588 0.25 -2.0
4,131,905 + Rru_A3588 0.25 -0.0
4,131,906 - Rru_A3588 0.26 -0.0
4,131,906 - Rru_A3588 0.26 -0.0
4,131,942 + Rru_A3588 0.30 -1.6
4,131,942 + Rru_A3588 0.30 -0.6
4,132,023 + Rru_A3588 0.41 -0.0
4,132,024 - Rru_A3588 0.41 +0.6
4,132,024 - Rru_A3588 0.41 -1.2
4,132,220 + Rru_A3588 0.67 -1.6
4,132,220 + Rru_A3588 0.67 -0.6
4,132,220 + Rru_A3588 0.67 -0.6
4,132,220 + Rru_A3588 0.67 -0.1
4,132,220 + Rru_A3588 0.67 -1.6
4,132,220 + Rru_A3588 0.67 -0.9
4,132,221 - Rru_A3588 0.68 -1.0
4,132,221 - Rru_A3588 0.68 -2.6
4,132,221 - Rru_A3588 0.68 -2.1
4,132,238 + Rru_A3588 0.70 -1.3
4,132,239 - Rru_A3588 0.70 -0.0
4,132,239 - Rru_A3588 0.70 -2.5

Or see this region's nucleotide sequence