Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3550 and Rru_A3551 are separated by 64 nucleotides Rru_A3551 and Rru_A3552 are separated by 43 nucleotides Rru_A3552 and Rru_A3553 overlap by 1 nucleotides Rru_A3553 and Rru_A3554 are separated by 211 nucleotides
Rru_A3550: Rru_A3550 - Cobyric acid synthase CobQ (NCBI), at 4,089,637 to 4,091,178
_A3550
Rru_A3551: Rru_A3551 - Aldo/keto reductase (NCBI), at 4,091,243 to 4,092,145
_A3551
Rru_A3552: Rru_A3552 - hypothetical protein (NCBI), at 4,092,189 to 4,092,326
_A3552
Rru_A3553: Rru_A3553 - hypothetical protein (NCBI), at 4,092,326 to 4,092,580
_A3553
Rru_A3554: Rru_A3554 - Heat shock protein DnaJ (NCBI), at 4,092,792 to 4,093,958
_A3554
Position (kb)
4091
4092
4093 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 4090.287 kb on + strand, within Rru_A3550 at 4090.287 kb on + strand, within Rru_A3550 at 4090.287 kb on + strand, within Rru_A3550 at 4090.553 kb on + strand, within Rru_A3550 at 4091.002 kb on + strand, within Rru_A3550 at 4091.002 kb on + strand, within Rru_A3550 at 4091.003 kb on - strand, within Rru_A3550 at 4091.248 kb on - strand at 4091.480 kb on + strand, within Rru_A3551 at 4091.487 kb on - strand, within Rru_A3551 at 4091.487 kb on - strand, within Rru_A3551 at 4091.487 kb on - strand, within Rru_A3551 at 4091.579 kb on + strand, within Rru_A3551 at 4091.580 kb on - strand, within Rru_A3551 at 4091.778 kb on - strand, within Rru_A3551 at 4091.807 kb on + strand, within Rru_A3551 at 4091.808 kb on - strand, within Rru_A3551 at 4091.808 kb on - strand, within Rru_A3551 at 4091.847 kb on - strand, within Rru_A3551 at 4092.163 kb on - strand at 4092.291 kb on - strand, within Rru_A3552 at 4092.291 kb on - strand, within Rru_A3552 at 4092.307 kb on + strand, within Rru_A3552 at 4092.339 kb on + strand at 4092.339 kb on + strand at 4092.475 kb on + strand, within Rru_A3553 at 4092.475 kb on + strand, within Rru_A3553 at 4092.476 kb on - strand, within Rru_A3553 at 4092.625 kb on - strand at 4092.625 kb on - strand at 4092.636 kb on + strand at 4092.636 kb on + strand at 4092.637 kb on - strand at 4092.642 kb on + strand at 4092.643 kb on - strand at 4092.682 kb on + strand at 4092.682 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 4,090,287 + Rru_A3550 0.42 -0.0 4,090,287 + Rru_A3550 0.42 -0.0 4,090,287 + Rru_A3550 0.42 -1.9 4,090,553 + Rru_A3550 0.59 -0.0 4,091,002 + Rru_A3550 0.89 -0.0 4,091,002 + Rru_A3550 0.89 -0.0 4,091,003 - Rru_A3550 0.89 -1.0 4,091,248 - -2.4 4,091,480 + Rru_A3551 0.26 -0.0 4,091,487 - Rru_A3551 0.27 -1.6 4,091,487 - Rru_A3551 0.27 -2.9 4,091,487 - Rru_A3551 0.27 -3.0 4,091,579 + Rru_A3551 0.37 +1.0 4,091,580 - Rru_A3551 0.37 -1.6 4,091,778 - Rru_A3551 0.59 -2.2 4,091,807 + Rru_A3551 0.62 -1.0 4,091,808 - Rru_A3551 0.63 -0.0 4,091,808 - Rru_A3551 0.63 -1.4 4,091,847 - Rru_A3551 0.67 -3.7 4,092,163 - -1.8 4,092,291 - Rru_A3552 0.74 -1.2 4,092,291 - Rru_A3552 0.74 -1.6 4,092,307 + Rru_A3552 0.86 -0.0 4,092,339 + -0.3 4,092,339 + -1.4 4,092,475 + Rru_A3553 0.58 -1.0 4,092,475 + Rru_A3553 0.58 -0.0 4,092,476 - Rru_A3553 0.59 -1.5 4,092,625 - -0.0 4,092,625 - -0.0 4,092,636 + -0.6 4,092,636 + -1.2 4,092,637 - -0.0 4,092,642 + -2.0 4,092,643 - -2.8 4,092,682 + -2.4 4,092,682 + -0.0
Or see this region's nucleotide sequence