Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3551

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3550 and Rru_A3551 are separated by 64 nucleotidesRru_A3551 and Rru_A3552 are separated by 43 nucleotidesRru_A3552 and Rru_A3553 overlap by 1 nucleotidesRru_A3553 and Rru_A3554 are separated by 211 nucleotides Rru_A3550: Rru_A3550 - Cobyric acid synthase CobQ (NCBI), at 4,089,637 to 4,091,178 _A3550 Rru_A3551: Rru_A3551 - Aldo/keto reductase (NCBI), at 4,091,243 to 4,092,145 _A3551 Rru_A3552: Rru_A3552 - hypothetical protein (NCBI), at 4,092,189 to 4,092,326 _A3552 Rru_A3553: Rru_A3553 - hypothetical protein (NCBI), at 4,092,326 to 4,092,580 _A3553 Rru_A3554: Rru_A3554 - Heat shock protein DnaJ (NCBI), at 4,092,792 to 4,093,958 _A3554 Position (kb) 4091 4092 4093Strain fitness (log2 ratio) -3 -2 -1 0 1at 4090.287 kb on + strand, within Rru_A3550at 4090.287 kb on + strand, within Rru_A3550at 4090.287 kb on + strand, within Rru_A3550at 4090.553 kb on + strand, within Rru_A3550at 4091.002 kb on + strand, within Rru_A3550at 4091.002 kb on + strand, within Rru_A3550at 4091.003 kb on - strand, within Rru_A3550at 4091.248 kb on - strandat 4091.480 kb on + strand, within Rru_A3551at 4091.487 kb on - strand, within Rru_A3551at 4091.487 kb on - strand, within Rru_A3551at 4091.487 kb on - strand, within Rru_A3551at 4091.579 kb on + strand, within Rru_A3551at 4091.580 kb on - strand, within Rru_A3551at 4091.778 kb on - strand, within Rru_A3551at 4091.807 kb on + strand, within Rru_A3551at 4091.808 kb on - strand, within Rru_A3551at 4091.808 kb on - strand, within Rru_A3551at 4091.847 kb on - strand, within Rru_A3551at 4092.163 kb on - strandat 4092.291 kb on - strand, within Rru_A3552at 4092.291 kb on - strand, within Rru_A3552at 4092.307 kb on + strand, within Rru_A3552at 4092.339 kb on + strandat 4092.339 kb on + strandat 4092.475 kb on + strand, within Rru_A3553at 4092.475 kb on + strand, within Rru_A3553at 4092.476 kb on - strand, within Rru_A3553at 4092.625 kb on - strandat 4092.625 kb on - strandat 4092.636 kb on + strandat 4092.636 kb on + strandat 4092.637 kb on - strandat 4092.642 kb on + strandat 4092.643 kb on - strandat 4092.682 kb on + strandat 4092.682 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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4,090,287 + Rru_A3550 0.42 -0.0
4,090,287 + Rru_A3550 0.42 -0.0
4,090,287 + Rru_A3550 0.42 -1.9
4,090,553 + Rru_A3550 0.59 -0.0
4,091,002 + Rru_A3550 0.89 -0.0
4,091,002 + Rru_A3550 0.89 -0.0
4,091,003 - Rru_A3550 0.89 -1.0
4,091,248 - -2.4
4,091,480 + Rru_A3551 0.26 -0.0
4,091,487 - Rru_A3551 0.27 -1.6
4,091,487 - Rru_A3551 0.27 -2.9
4,091,487 - Rru_A3551 0.27 -3.0
4,091,579 + Rru_A3551 0.37 +1.0
4,091,580 - Rru_A3551 0.37 -1.6
4,091,778 - Rru_A3551 0.59 -2.2
4,091,807 + Rru_A3551 0.62 -1.0
4,091,808 - Rru_A3551 0.63 -0.0
4,091,808 - Rru_A3551 0.63 -1.4
4,091,847 - Rru_A3551 0.67 -3.7
4,092,163 - -1.8
4,092,291 - Rru_A3552 0.74 -1.2
4,092,291 - Rru_A3552 0.74 -1.6
4,092,307 + Rru_A3552 0.86 -0.0
4,092,339 + -0.3
4,092,339 + -1.4
4,092,475 + Rru_A3553 0.58 -1.0
4,092,475 + Rru_A3553 0.58 -0.0
4,092,476 - Rru_A3553 0.59 -1.5
4,092,625 - -0.0
4,092,625 - -0.0
4,092,636 + -0.6
4,092,636 + -1.2
4,092,637 - -0.0
4,092,642 + -2.0
4,092,643 - -2.8
4,092,682 + -2.4
4,092,682 + -0.0

Or see this region's nucleotide sequence