Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3509 and Rru_A3510 overlap by 1 nucleotides Rru_A3510 and Rru_A3511 are separated by 378 nucleotides
Rru_A3509: Rru_A3509 - AMP-dependent synthetase and ligase (NCBI), at 4,036,633 to 4,038,600
_A3509
Rru_A3510: Rru_A3510 - ABC transporter component (NCBI), at 4,038,600 to 4,039,424
_A3510
Rru_A3511: Rru_A3511 - Aconitate hydratase 1 (NCBI), at 4,039,803 to 4,042,478
_A3511
Position (kb)
4038
4039
4040 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5
6 at 4037.843 kb on + strand, within Rru_A3509 at 4037.843 kb on + strand, within Rru_A3509 at 4037.844 kb on - strand, within Rru_A3509 at 4037.844 kb on - strand, within Rru_A3509 at 4037.844 kb on - strand, within Rru_A3509 at 4037.844 kb on - strand, within Rru_A3509 at 4037.844 kb on - strand, within Rru_A3509 at 4037.885 kb on + strand, within Rru_A3509 at 4037.885 kb on + strand, within Rru_A3509 at 4037.885 kb on + strand, within Rru_A3509 at 4037.885 kb on + strand, within Rru_A3509 at 4037.886 kb on - strand, within Rru_A3509 at 4037.886 kb on - strand, within Rru_A3509 at 4037.886 kb on - strand, within Rru_A3509 at 4037.886 kb on - strand, within Rru_A3509 at 4037.886 kb on - strand, within Rru_A3509 at 4037.886 kb on - strand, within Rru_A3509 at 4037.886 kb on - strand, within Rru_A3509 at 4037.922 kb on - strand, within Rru_A3509 at 4037.922 kb on - strand, within Rru_A3509 at 4037.922 kb on - strand, within Rru_A3509 at 4037.922 kb on - strand, within Rru_A3509 at 4037.922 kb on - strand, within Rru_A3509 at 4038.047 kb on + strand, within Rru_A3509 at 4038.125 kb on + strand, within Rru_A3509 at 4038.125 kb on + strand, within Rru_A3509 at 4038.125 kb on + strand, within Rru_A3509 at 4038.126 kb on - strand, within Rru_A3509 at 4038.126 kb on - strand, within Rru_A3509 at 4038.126 kb on - strand, within Rru_A3509 at 4038.126 kb on - strand, within Rru_A3509 at 4038.126 kb on - strand, within Rru_A3509 at 4038.126 kb on - strand, within Rru_A3509 at 4038.152 kb on + strand, within Rru_A3509 at 4038.290 kb on + strand, within Rru_A3509 at 4038.290 kb on + strand, within Rru_A3509 at 4038.290 kb on + strand, within Rru_A3509 at 4038.290 kb on + strand, within Rru_A3509 at 4038.290 kb on + strand, within Rru_A3509 at 4038.291 kb on - strand, within Rru_A3509 at 4038.291 kb on - strand, within Rru_A3509 at 4038.291 kb on - strand, within Rru_A3509 at 4038.291 kb on - strand, within Rru_A3509 at 4038.291 kb on - strand, within Rru_A3509 at 4038.291 kb on - strand, within Rru_A3509 at 4038.391 kb on + strand, within Rru_A3509 at 4038.392 kb on - strand, within Rru_A3509 at 4038.392 kb on - strand, within Rru_A3509 at 4038.392 kb on - strand, within Rru_A3509 at 4038.392 kb on - strand, within Rru_A3509 at 4038.420 kb on - strand at 4038.420 kb on - strand at 4038.420 kb on - strand at 4038.566 kb on + strand at 4038.567 kb on - strand at 4038.749 kb on + strand, within Rru_A3510 at 4038.749 kb on + strand, within Rru_A3510 at 4038.758 kb on + strand, within Rru_A3510 at 4038.759 kb on - strand, within Rru_A3510 at 4038.905 kb on + strand, within Rru_A3510 at 4038.906 kb on - strand, within Rru_A3510 at 4039.063 kb on + strand, within Rru_A3510 at 4039.063 kb on + strand, within Rru_A3510 at 4039.063 kb on + strand, within Rru_A3510 at 4039.136 kb on + strand, within Rru_A3510 at 4039.136 kb on + strand, within Rru_A3510 at 4039.136 kb on + strand, within Rru_A3510 at 4039.136 kb on + strand, within Rru_A3510 at 4039.137 kb on - strand, within Rru_A3510 at 4039.137 kb on - strand, within Rru_A3510 at 4039.137 kb on - strand, within Rru_A3510 at 4039.137 kb on - strand, within Rru_A3510 at 4039.529 kb on - strand at 4039.629 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 4,037,843 + Rru_A3509 0.61 -1.1 4,037,843 + Rru_A3509 0.61 -2.0 4,037,844 - Rru_A3509 0.62 -0.7 4,037,844 - Rru_A3509 0.62 -0.3 4,037,844 - Rru_A3509 0.62 -0.0 4,037,844 - Rru_A3509 0.62 -2.0 4,037,844 - Rru_A3509 0.62 -1.2 4,037,885 + Rru_A3509 0.64 -0.0 4,037,885 + Rru_A3509 0.64 -1.0 4,037,885 + Rru_A3509 0.64 -1.0 4,037,885 + Rru_A3509 0.64 -0.4 4,037,886 - Rru_A3509 0.64 -1.5 4,037,886 - Rru_A3509 0.64 -3.2 4,037,886 - Rru_A3509 0.64 -0.0 4,037,886 - Rru_A3509 0.64 +2.0 4,037,886 - Rru_A3509 0.64 -1.6 4,037,886 - Rru_A3509 0.64 -2.2 4,037,886 - Rru_A3509 0.64 -0.0 4,037,922 - Rru_A3509 0.65 -1.9 4,037,922 - Rru_A3509 0.65 -1.0 4,037,922 - Rru_A3509 0.65 -0.0 4,037,922 - Rru_A3509 0.65 -2.1 4,037,922 - Rru_A3509 0.65 -0.0 4,038,047 + Rru_A3509 0.72 -0.0 4,038,125 + Rru_A3509 0.76 -1.5 4,038,125 + Rru_A3509 0.76 -0.0 4,038,125 + Rru_A3509 0.76 -0.0 4,038,126 - Rru_A3509 0.76 -2.8 4,038,126 - Rru_A3509 0.76 -0.0 4,038,126 - Rru_A3509 0.76 -2.0 4,038,126 - Rru_A3509 0.76 -0.0 4,038,126 - Rru_A3509 0.76 -0.0 4,038,126 - Rru_A3509 0.76 -0.3 4,038,152 + Rru_A3509 0.77 -1.9 4,038,290 + Rru_A3509 0.84 +6.3 4,038,290 + Rru_A3509 0.84 -1.1 4,038,290 + Rru_A3509 0.84 -0.7 4,038,290 + Rru_A3509 0.84 -0.0 4,038,290 + Rru_A3509 0.84 +0.6 4,038,291 - Rru_A3509 0.84 -0.0 4,038,291 - Rru_A3509 0.84 -0.8 4,038,291 - Rru_A3509 0.84 -1.0 4,038,291 - Rru_A3509 0.84 -0.9 4,038,291 - Rru_A3509 0.84 -0.0 4,038,291 - Rru_A3509 0.84 -0.0 4,038,391 + Rru_A3509 0.89 -0.0 4,038,392 - Rru_A3509 0.89 -0.2 4,038,392 - Rru_A3509 0.89 -2.3 4,038,392 - Rru_A3509 0.89 -1.2 4,038,392 - Rru_A3509 0.89 -0.0 4,038,420 - -0.0 4,038,420 - -2.2 4,038,420 - -0.0 4,038,566 + -2.1 4,038,567 - -2.0 4,038,749 + Rru_A3510 0.18 -0.0 4,038,749 + Rru_A3510 0.18 -3.0 4,038,758 + Rru_A3510 0.19 -4.0 4,038,759 - Rru_A3510 0.19 -3.5 4,038,905 + Rru_A3510 0.37 -0.0 4,038,906 - Rru_A3510 0.37 -2.0 4,039,063 + Rru_A3510 0.56 -2.2 4,039,063 + Rru_A3510 0.56 -2.8 4,039,063 + Rru_A3510 0.56 -2.1 4,039,136 + Rru_A3510 0.65 -2.5 4,039,136 + Rru_A3510 0.65 -0.0 4,039,136 + Rru_A3510 0.65 -0.5 4,039,136 + Rru_A3510 0.65 -0.0 4,039,137 - Rru_A3510 0.65 -0.0 4,039,137 - Rru_A3510 0.65 -3.0 4,039,137 - Rru_A3510 0.65 -0.0 4,039,137 - Rru_A3510 0.65 -2.0 4,039,529 - -1.0 4,039,629 + -0.2
Or see this region's nucleotide sequence