Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3418

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3417 and Rru_A3418 overlap by 4 nucleotidesRru_A3418 and Rru_A3419 are separated by 186 nucleotides Rru_A3417: Rru_A3417 - Extracellular ligand-binding receptor (NCBI), at 3,932,976 to 3,934,205 _A3417 Rru_A3418: Rru_A3418 - Transcriptional Regulator, TetR family (NCBI), at 3,934,202 to 3,934,906 _A3418 Rru_A3419: Rru_A3419 - Phosphoenolpyruvate carboxykinase (GTP) (NCBI), at 3,935,093 to 3,936,955 _A3419 Position (kb) 3934 3935Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3933.265 kb on + strand, within Rru_A3417at 3933.265 kb on + strand, within Rru_A3417at 3933.265 kb on + strand, within Rru_A3417at 3933.265 kb on + strand, within Rru_A3417at 3933.265 kb on + strand, within Rru_A3417at 3933.265 kb on + strand, within Rru_A3417at 3933.265 kb on + strand, within Rru_A3417at 3933.265 kb on + strand, within Rru_A3417at 3933.265 kb on + strand, within Rru_A3417at 3933.265 kb on + strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.266 kb on - strand, within Rru_A3417at 3933.280 kb on + strand, within Rru_A3417at 3933.280 kb on + strand, within Rru_A3417at 3933.281 kb on - strand, within Rru_A3417at 3933.517 kb on + strand, within Rru_A3417at 3933.517 kb on + strand, within Rru_A3417at 3933.517 kb on + strand, within Rru_A3417at 3933.517 kb on + strand, within Rru_A3417at 3933.518 kb on - strand, within Rru_A3417at 3933.518 kb on - strand, within Rru_A3417at 3933.518 kb on - strand, within Rru_A3417at 3933.518 kb on - strand, within Rru_A3417at 3933.598 kb on + strand, within Rru_A3417at 3933.598 kb on + strand, within Rru_A3417at 3933.599 kb on - strand, within Rru_A3417at 3933.599 kb on - strand, within Rru_A3417at 3933.618 kb on - strand, within Rru_A3417at 3933.660 kb on - strand, within Rru_A3417at 3933.915 kb on - strand, within Rru_A3417at 3933.915 kb on - strand, within Rru_A3417at 3933.915 kb on - strand, within Rru_A3417at 3933.915 kb on - strand, within Rru_A3417at 3934.069 kb on + strand, within Rru_A3417at 3934.329 kb on + strand, within Rru_A3418at 3934.329 kb on + strand, within Rru_A3418at 3934.330 kb on - strand, within Rru_A3418at 3934.330 kb on - strand, within Rru_A3418at 3934.332 kb on + strand, within Rru_A3418at 3934.333 kb on - strand, within Rru_A3418at 3934.333 kb on - strand, within Rru_A3418at 3934.558 kb on - strand, within Rru_A3418at 3934.558 kb on - strand, within Rru_A3418at 3934.558 kb on - strand, within Rru_A3418at 3934.593 kb on + strand, within Rru_A3418at 3934.788 kb on + strand, within Rru_A3418at 3934.789 kb on - strand, within Rru_A3418

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,933,265 + Rru_A3417 0.23 -3.2
3,933,265 + Rru_A3417 0.23 +0.1
3,933,265 + Rru_A3417 0.23 -1.4
3,933,265 + Rru_A3417 0.23 -1.2
3,933,265 + Rru_A3417 0.23 +0.1
3,933,265 + Rru_A3417 0.23 +1.1
3,933,265 + Rru_A3417 0.23 -2.9
3,933,265 + Rru_A3417 0.23 +0.1
3,933,265 + Rru_A3417 0.23 -0.9
3,933,265 + Rru_A3417 0.23 -0.9
3,933,266 - Rru_A3417 0.24 +0.1
3,933,266 - Rru_A3417 0.24 +0.1
3,933,266 - Rru_A3417 0.24 +0.1
3,933,266 - Rru_A3417 0.24 +0.1
3,933,266 - Rru_A3417 0.24 -0.9
3,933,266 - Rru_A3417 0.24 -2.9
3,933,266 - Rru_A3417 0.24 +0.5
3,933,266 - Rru_A3417 0.24 -0.9
3,933,266 - Rru_A3417 0.24 -1.6
3,933,266 - Rru_A3417 0.24 -2.1
3,933,266 - Rru_A3417 0.24 -0.8
3,933,266 - Rru_A3417 0.24 -1.3
3,933,266 - Rru_A3417 0.24 -2.3
3,933,280 + Rru_A3417 0.25 -0.9
3,933,280 + Rru_A3417 0.25 +0.8
3,933,281 - Rru_A3417 0.25 -2.7
3,933,517 + Rru_A3417 0.44 -1.2
3,933,517 + Rru_A3417 0.44 -2.4
3,933,517 + Rru_A3417 0.44 +0.1
3,933,517 + Rru_A3417 0.44 -1.5
3,933,518 - Rru_A3417 0.44 -2.7
3,933,518 - Rru_A3417 0.44 +0.1
3,933,518 - Rru_A3417 0.44 -3.9
3,933,518 - Rru_A3417 0.44 +0.1
3,933,598 + Rru_A3417 0.51 -2.6
3,933,598 + Rru_A3417 0.51 -1.3
3,933,599 - Rru_A3417 0.51 -1.4
3,933,599 - Rru_A3417 0.51 -0.6
3,933,618 - Rru_A3417 0.52 -2.5
3,933,660 - Rru_A3417 0.56 +0.1
3,933,915 - Rru_A3417 0.76 +0.1
3,933,915 - Rru_A3417 0.76 -0.5
3,933,915 - Rru_A3417 0.76 -2.5
3,933,915 - Rru_A3417 0.76 +0.1
3,934,069 + Rru_A3417 0.89 +0.1
3,934,329 + Rru_A3418 0.18 -0.6
3,934,329 + Rru_A3418 0.18 -2.8
3,934,330 - Rru_A3418 0.18 +0.1
3,934,330 - Rru_A3418 0.18 -0.9
3,934,332 + Rru_A3418 0.18 -1.5
3,934,333 - Rru_A3418 0.19 -2.8
3,934,333 - Rru_A3418 0.19 -2.9
3,934,558 - Rru_A3418 0.50 +0.1
3,934,558 - Rru_A3418 0.50 -1.5
3,934,558 - Rru_A3418 0.50 -2.9
3,934,593 + Rru_A3418 0.55 -2.1
3,934,788 + Rru_A3418 0.83 +0.1
3,934,789 - Rru_A3418 0.83 -2.2

Or see this region's nucleotide sequence