Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3417 and Rru_A3418 overlap by 4 nucleotides Rru_A3418 and Rru_A3419 are separated by 186 nucleotides
Rru_A3417: Rru_A3417 - Extracellular ligand-binding receptor (NCBI), at 3,932,976 to 3,934,205
_A3417
Rru_A3418: Rru_A3418 - Transcriptional Regulator, TetR family (NCBI), at 3,934,202 to 3,934,906
_A3418
Rru_A3419: Rru_A3419 - Phosphoenolpyruvate carboxykinase (GTP) (NCBI), at 3,935,093 to 3,936,955
_A3419
Position (kb)
3934
3935 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3933.265 kb on + strand, within Rru_A3417 at 3933.265 kb on + strand, within Rru_A3417 at 3933.265 kb on + strand, within Rru_A3417 at 3933.265 kb on + strand, within Rru_A3417 at 3933.265 kb on + strand, within Rru_A3417 at 3933.265 kb on + strand, within Rru_A3417 at 3933.265 kb on + strand, within Rru_A3417 at 3933.265 kb on + strand, within Rru_A3417 at 3933.265 kb on + strand, within Rru_A3417 at 3933.265 kb on + strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.266 kb on - strand, within Rru_A3417 at 3933.280 kb on + strand, within Rru_A3417 at 3933.280 kb on + strand, within Rru_A3417 at 3933.281 kb on - strand, within Rru_A3417 at 3933.517 kb on + strand, within Rru_A3417 at 3933.517 kb on + strand, within Rru_A3417 at 3933.517 kb on + strand, within Rru_A3417 at 3933.517 kb on + strand, within Rru_A3417 at 3933.518 kb on - strand, within Rru_A3417 at 3933.518 kb on - strand, within Rru_A3417 at 3933.518 kb on - strand, within Rru_A3417 at 3933.518 kb on - strand, within Rru_A3417 at 3933.598 kb on + strand, within Rru_A3417 at 3933.598 kb on + strand, within Rru_A3417 at 3933.599 kb on - strand, within Rru_A3417 at 3933.599 kb on - strand, within Rru_A3417 at 3933.618 kb on - strand, within Rru_A3417 at 3933.660 kb on - strand, within Rru_A3417 at 3933.915 kb on - strand, within Rru_A3417 at 3933.915 kb on - strand, within Rru_A3417 at 3933.915 kb on - strand, within Rru_A3417 at 3933.915 kb on - strand, within Rru_A3417 at 3934.069 kb on + strand, within Rru_A3417 at 3934.329 kb on + strand, within Rru_A3418 at 3934.329 kb on + strand, within Rru_A3418 at 3934.330 kb on - strand, within Rru_A3418 at 3934.330 kb on - strand, within Rru_A3418 at 3934.332 kb on + strand, within Rru_A3418 at 3934.333 kb on - strand, within Rru_A3418 at 3934.333 kb on - strand, within Rru_A3418 at 3934.558 kb on - strand, within Rru_A3418 at 3934.558 kb on - strand, within Rru_A3418 at 3934.558 kb on - strand, within Rru_A3418 at 3934.593 kb on + strand, within Rru_A3418 at 3934.788 kb on + strand, within Rru_A3418 at 3934.789 kb on - strand, within Rru_A3418
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,933,265 + Rru_A3417 0.23 -3.2 3,933,265 + Rru_A3417 0.23 +0.1 3,933,265 + Rru_A3417 0.23 -1.4 3,933,265 + Rru_A3417 0.23 -1.2 3,933,265 + Rru_A3417 0.23 +0.1 3,933,265 + Rru_A3417 0.23 +1.1 3,933,265 + Rru_A3417 0.23 -2.9 3,933,265 + Rru_A3417 0.23 +0.1 3,933,265 + Rru_A3417 0.23 -0.9 3,933,265 + Rru_A3417 0.23 -0.9 3,933,266 - Rru_A3417 0.24 +0.1 3,933,266 - Rru_A3417 0.24 +0.1 3,933,266 - Rru_A3417 0.24 +0.1 3,933,266 - Rru_A3417 0.24 +0.1 3,933,266 - Rru_A3417 0.24 -0.9 3,933,266 - Rru_A3417 0.24 -2.9 3,933,266 - Rru_A3417 0.24 +0.5 3,933,266 - Rru_A3417 0.24 -0.9 3,933,266 - Rru_A3417 0.24 -1.6 3,933,266 - Rru_A3417 0.24 -2.1 3,933,266 - Rru_A3417 0.24 -0.8 3,933,266 - Rru_A3417 0.24 -1.3 3,933,266 - Rru_A3417 0.24 -2.3 3,933,280 + Rru_A3417 0.25 -0.9 3,933,280 + Rru_A3417 0.25 +0.8 3,933,281 - Rru_A3417 0.25 -2.7 3,933,517 + Rru_A3417 0.44 -1.2 3,933,517 + Rru_A3417 0.44 -2.4 3,933,517 + Rru_A3417 0.44 +0.1 3,933,517 + Rru_A3417 0.44 -1.5 3,933,518 - Rru_A3417 0.44 -2.7 3,933,518 - Rru_A3417 0.44 +0.1 3,933,518 - Rru_A3417 0.44 -3.9 3,933,518 - Rru_A3417 0.44 +0.1 3,933,598 + Rru_A3417 0.51 -2.6 3,933,598 + Rru_A3417 0.51 -1.3 3,933,599 - Rru_A3417 0.51 -1.4 3,933,599 - Rru_A3417 0.51 -0.6 3,933,618 - Rru_A3417 0.52 -2.5 3,933,660 - Rru_A3417 0.56 +0.1 3,933,915 - Rru_A3417 0.76 +0.1 3,933,915 - Rru_A3417 0.76 -0.5 3,933,915 - Rru_A3417 0.76 -2.5 3,933,915 - Rru_A3417 0.76 +0.1 3,934,069 + Rru_A3417 0.89 +0.1 3,934,329 + Rru_A3418 0.18 -0.6 3,934,329 + Rru_A3418 0.18 -2.8 3,934,330 - Rru_A3418 0.18 +0.1 3,934,330 - Rru_A3418 0.18 -0.9 3,934,332 + Rru_A3418 0.18 -1.5 3,934,333 - Rru_A3418 0.19 -2.8 3,934,333 - Rru_A3418 0.19 -2.9 3,934,558 - Rru_A3418 0.50 +0.1 3,934,558 - Rru_A3418 0.50 -1.5 3,934,558 - Rru_A3418 0.50 -2.9 3,934,593 + Rru_A3418 0.55 -2.1 3,934,788 + Rru_A3418 0.83 +0.1 3,934,789 - Rru_A3418 0.83 -2.2
Or see this region's nucleotide sequence