Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3403 and Rru_A3404 are separated by 30 nucleotides Rru_A3404 and Rru_A3405 are separated by 103 nucleotides
Rru_A3403: Rru_A3403 - Sulphate transport system permease protein 1 (NCBI), at 3,918,825 to 3,919,895
_A3403
Rru_A3404: Rru_A3404 - trkA-C domain protein (NCBI), at 3,919,926 to 3,921,680
_A3404
Rru_A3405: Rru_A3405 - Formaldehyde dehydrogenase (glutathione) (NCBI), at 3,921,784 to 3,922,902
_A3405
Position (kb)
3919
3920
3921
3922 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3920.001 kb on + strand at 3920.001 kb on + strand at 3920.329 kb on + strand, within Rru_A3404 at 3920.329 kb on + strand, within Rru_A3404 at 3921.231 kb on + strand, within Rru_A3404 at 3921.232 kb on - strand, within Rru_A3404 at 3921.457 kb on + strand, within Rru_A3404 at 3921.457 kb on + strand, within Rru_A3404 at 3921.457 kb on + strand, within Rru_A3404 at 3921.458 kb on - strand, within Rru_A3404 at 3921.458 kb on - strand, within Rru_A3404 at 3921.458 kb on - strand, within Rru_A3404 at 3921.600 kb on + strand at 3921.732 kb on - strand at 3921.732 kb on - strand at 3921.732 kb on - strand at 3921.909 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.919 kb on + strand, within Rru_A3405 at 3921.920 kb on - strand, within Rru_A3405 at 3921.920 kb on - strand, within Rru_A3405 at 3921.920 kb on - strand, within Rru_A3405 at 3921.920 kb on - strand, within Rru_A3405 at 3921.920 kb on - strand, within Rru_A3405 at 3921.921 kb on + strand, within Rru_A3405 at 3921.921 kb on + strand, within Rru_A3405 at 3921.921 kb on + strand, within Rru_A3405 at 3921.922 kb on - strand, within Rru_A3405 at 3921.922 kb on - strand, within Rru_A3405 at 3921.922 kb on - strand, within Rru_A3405 at 3921.922 kb on - strand, within Rru_A3405 at 3922.048 kb on + strand, within Rru_A3405 at 3922.189 kb on + strand, within Rru_A3405 at 3922.189 kb on + strand, within Rru_A3405 at 3922.189 kb on + strand, within Rru_A3405 at 3922.189 kb on + strand, within Rru_A3405 at 3922.189 kb on + strand, within Rru_A3405 at 3922.189 kb on + strand, within Rru_A3405 at 3922.189 kb on + strand, within Rru_A3405 at 3922.189 kb on + strand, within Rru_A3405 at 3922.190 kb on - strand, within Rru_A3405 at 3922.190 kb on - strand, within Rru_A3405 at 3922.190 kb on - strand, within Rru_A3405 at 3922.190 kb on - strand, within Rru_A3405 at 3922.190 kb on - strand, within Rru_A3405 at 3922.190 kb on - strand, within Rru_A3405 at 3922.190 kb on - strand, within Rru_A3405 at 3922.216 kb on + strand, within Rru_A3405 at 3922.217 kb on - strand, within Rru_A3405 at 3922.217 kb on - strand, within Rru_A3405 at 3922.326 kb on + strand, within Rru_A3405 at 3922.326 kb on + strand, within Rru_A3405 at 3922.327 kb on - strand, within Rru_A3405 at 3922.453 kb on - strand, within Rru_A3405 at 3922.507 kb on + strand, within Rru_A3405 at 3922.508 kb on - strand, within Rru_A3405 at 3922.561 kb on + strand, within Rru_A3405
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,920,001 + +0.0 3,920,001 + +1.0 3,920,329 + Rru_A3404 0.23 +0.0 3,920,329 + Rru_A3404 0.23 -2.8 3,921,231 + Rru_A3404 0.74 -2.4 3,921,232 - Rru_A3404 0.74 +0.0 3,921,457 + Rru_A3404 0.87 +0.0 3,921,457 + Rru_A3404 0.87 -1.6 3,921,457 + Rru_A3404 0.87 -1.6 3,921,458 - Rru_A3404 0.87 -1.7 3,921,458 - Rru_A3404 0.87 -2.8 3,921,458 - Rru_A3404 0.87 +0.0 3,921,600 + +0.0 3,921,732 - -1.7 3,921,732 - -0.5 3,921,732 - -1.5 3,921,909 + Rru_A3405 0.11 +0.0 3,921,919 + Rru_A3405 0.12 -1.0 3,921,919 + Rru_A3405 0.12 -1.8 3,921,919 + Rru_A3405 0.12 +0.0 3,921,919 + Rru_A3405 0.12 +0.0 3,921,919 + Rru_A3405 0.12 -0.9 3,921,919 + Rru_A3405 0.12 -1.5 3,921,919 + Rru_A3405 0.12 +0.5 3,921,919 + Rru_A3405 0.12 +0.0 3,921,919 + Rru_A3405 0.12 +0.0 3,921,919 + Rru_A3405 0.12 -1.5 3,921,920 - Rru_A3405 0.12 -0.8 3,921,920 - Rru_A3405 0.12 -1.0 3,921,920 - Rru_A3405 0.12 +0.5 3,921,920 - Rru_A3405 0.12 +0.8 3,921,920 - Rru_A3405 0.12 -0.4 3,921,921 + Rru_A3405 0.12 +0.0 3,921,921 + Rru_A3405 0.12 -0.8 3,921,921 + Rru_A3405 0.12 +0.0 3,921,922 - Rru_A3405 0.12 +0.0 3,921,922 - Rru_A3405 0.12 +0.0 3,921,922 - Rru_A3405 0.12 -2.8 3,921,922 - Rru_A3405 0.12 -3.0 3,922,048 + Rru_A3405 0.24 -0.3 3,922,189 + Rru_A3405 0.36 -1.1 3,922,189 + Rru_A3405 0.36 +0.6 3,922,189 + Rru_A3405 0.36 +0.0 3,922,189 + Rru_A3405 0.36 -2.5 3,922,189 + Rru_A3405 0.36 -1.0 3,922,189 + Rru_A3405 0.36 -1.6 3,922,189 + Rru_A3405 0.36 -1.4 3,922,189 + Rru_A3405 0.36 -0.5 3,922,190 - Rru_A3405 0.36 +0.0 3,922,190 - Rru_A3405 0.36 -2.2 3,922,190 - Rru_A3405 0.36 -1.6 3,922,190 - Rru_A3405 0.36 +0.0 3,922,190 - Rru_A3405 0.36 -2.3 3,922,190 - Rru_A3405 0.36 -1.0 3,922,190 - Rru_A3405 0.36 +0.0 3,922,216 + Rru_A3405 0.39 +0.0 3,922,217 - Rru_A3405 0.39 +0.0 3,922,217 - Rru_A3405 0.39 +0.0 3,922,326 + Rru_A3405 0.48 +0.0 3,922,326 + Rru_A3405 0.48 +0.0 3,922,327 - Rru_A3405 0.49 -2.8 3,922,453 - Rru_A3405 0.60 +0.0 3,922,507 + Rru_A3405 0.65 -2.0 3,922,508 - Rru_A3405 0.65 +0.0 3,922,561 + Rru_A3405 0.69 -1.0
Or see this region's nucleotide sequence