Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3404

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3403 and Rru_A3404 are separated by 30 nucleotidesRru_A3404 and Rru_A3405 are separated by 103 nucleotides Rru_A3403: Rru_A3403 - Sulphate transport system permease protein 1 (NCBI), at 3,918,825 to 3,919,895 _A3403 Rru_A3404: Rru_A3404 - trkA-C domain protein (NCBI), at 3,919,926 to 3,921,680 _A3404 Rru_A3405: Rru_A3405 - Formaldehyde dehydrogenase (glutathione) (NCBI), at 3,921,784 to 3,922,902 _A3405 Position (kb) 3919 3920 3921 3922Strain fitness (log2 ratio) -3 -2 -1 0 1at 3920.001 kb on + strandat 3920.001 kb on + strandat 3920.329 kb on + strand, within Rru_A3404at 3920.329 kb on + strand, within Rru_A3404at 3921.231 kb on + strand, within Rru_A3404at 3921.232 kb on - strand, within Rru_A3404at 3921.457 kb on + strand, within Rru_A3404at 3921.457 kb on + strand, within Rru_A3404at 3921.457 kb on + strand, within Rru_A3404at 3921.458 kb on - strand, within Rru_A3404at 3921.458 kb on - strand, within Rru_A3404at 3921.458 kb on - strand, within Rru_A3404at 3921.600 kb on + strandat 3921.732 kb on - strandat 3921.732 kb on - strandat 3921.732 kb on - strandat 3921.909 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.919 kb on + strand, within Rru_A3405at 3921.920 kb on - strand, within Rru_A3405at 3921.920 kb on - strand, within Rru_A3405at 3921.920 kb on - strand, within Rru_A3405at 3921.920 kb on - strand, within Rru_A3405at 3921.920 kb on - strand, within Rru_A3405at 3921.921 kb on + strand, within Rru_A3405at 3921.921 kb on + strand, within Rru_A3405at 3921.921 kb on + strand, within Rru_A3405at 3921.922 kb on - strand, within Rru_A3405at 3921.922 kb on - strand, within Rru_A3405at 3921.922 kb on - strand, within Rru_A3405at 3921.922 kb on - strand, within Rru_A3405at 3922.048 kb on + strand, within Rru_A3405at 3922.189 kb on + strand, within Rru_A3405at 3922.189 kb on + strand, within Rru_A3405at 3922.189 kb on + strand, within Rru_A3405at 3922.189 kb on + strand, within Rru_A3405at 3922.189 kb on + strand, within Rru_A3405at 3922.189 kb on + strand, within Rru_A3405at 3922.189 kb on + strand, within Rru_A3405at 3922.189 kb on + strand, within Rru_A3405at 3922.190 kb on - strand, within Rru_A3405at 3922.190 kb on - strand, within Rru_A3405at 3922.190 kb on - strand, within Rru_A3405at 3922.190 kb on - strand, within Rru_A3405at 3922.190 kb on - strand, within Rru_A3405at 3922.190 kb on - strand, within Rru_A3405at 3922.190 kb on - strand, within Rru_A3405at 3922.216 kb on + strand, within Rru_A3405at 3922.217 kb on - strand, within Rru_A3405at 3922.217 kb on - strand, within Rru_A3405at 3922.326 kb on + strand, within Rru_A3405at 3922.326 kb on + strand, within Rru_A3405at 3922.327 kb on - strand, within Rru_A3405at 3922.453 kb on - strand, within Rru_A3405at 3922.507 kb on + strand, within Rru_A3405at 3922.508 kb on - strand, within Rru_A3405at 3922.561 kb on + strand, within Rru_A3405

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,920,001 + +0.0
3,920,001 + +1.0
3,920,329 + Rru_A3404 0.23 +0.0
3,920,329 + Rru_A3404 0.23 -2.8
3,921,231 + Rru_A3404 0.74 -2.4
3,921,232 - Rru_A3404 0.74 +0.0
3,921,457 + Rru_A3404 0.87 +0.0
3,921,457 + Rru_A3404 0.87 -1.6
3,921,457 + Rru_A3404 0.87 -1.6
3,921,458 - Rru_A3404 0.87 -1.7
3,921,458 - Rru_A3404 0.87 -2.8
3,921,458 - Rru_A3404 0.87 +0.0
3,921,600 + +0.0
3,921,732 - -1.7
3,921,732 - -0.5
3,921,732 - -1.5
3,921,909 + Rru_A3405 0.11 +0.0
3,921,919 + Rru_A3405 0.12 -1.0
3,921,919 + Rru_A3405 0.12 -1.8
3,921,919 + Rru_A3405 0.12 +0.0
3,921,919 + Rru_A3405 0.12 +0.0
3,921,919 + Rru_A3405 0.12 -0.9
3,921,919 + Rru_A3405 0.12 -1.5
3,921,919 + Rru_A3405 0.12 +0.5
3,921,919 + Rru_A3405 0.12 +0.0
3,921,919 + Rru_A3405 0.12 +0.0
3,921,919 + Rru_A3405 0.12 -1.5
3,921,920 - Rru_A3405 0.12 -0.8
3,921,920 - Rru_A3405 0.12 -1.0
3,921,920 - Rru_A3405 0.12 +0.5
3,921,920 - Rru_A3405 0.12 +0.8
3,921,920 - Rru_A3405 0.12 -0.4
3,921,921 + Rru_A3405 0.12 +0.0
3,921,921 + Rru_A3405 0.12 -0.8
3,921,921 + Rru_A3405 0.12 +0.0
3,921,922 - Rru_A3405 0.12 +0.0
3,921,922 - Rru_A3405 0.12 +0.0
3,921,922 - Rru_A3405 0.12 -2.8
3,921,922 - Rru_A3405 0.12 -3.0
3,922,048 + Rru_A3405 0.24 -0.3
3,922,189 + Rru_A3405 0.36 -1.1
3,922,189 + Rru_A3405 0.36 +0.6
3,922,189 + Rru_A3405 0.36 +0.0
3,922,189 + Rru_A3405 0.36 -2.5
3,922,189 + Rru_A3405 0.36 -1.0
3,922,189 + Rru_A3405 0.36 -1.6
3,922,189 + Rru_A3405 0.36 -1.4
3,922,189 + Rru_A3405 0.36 -0.5
3,922,190 - Rru_A3405 0.36 +0.0
3,922,190 - Rru_A3405 0.36 -2.2
3,922,190 - Rru_A3405 0.36 -1.6
3,922,190 - Rru_A3405 0.36 +0.0
3,922,190 - Rru_A3405 0.36 -2.3
3,922,190 - Rru_A3405 0.36 -1.0
3,922,190 - Rru_A3405 0.36 +0.0
3,922,216 + Rru_A3405 0.39 +0.0
3,922,217 - Rru_A3405 0.39 +0.0
3,922,217 - Rru_A3405 0.39 +0.0
3,922,326 + Rru_A3405 0.48 +0.0
3,922,326 + Rru_A3405 0.48 +0.0
3,922,327 - Rru_A3405 0.49 -2.8
3,922,453 - Rru_A3405 0.60 +0.0
3,922,507 + Rru_A3405 0.65 -2.0
3,922,508 - Rru_A3405 0.65 +0.0
3,922,561 + Rru_A3405 0.69 -1.0

Or see this region's nucleotide sequence