Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3359 and Rru_A3360 overlap by 4 nucleotides Rru_A3360 and Rru_A3361 are separated by 34 nucleotides Rru_A3361 and Rru_A3362 are separated by 18 nucleotides
Rru_A3359: Rru_A3359 - Cobyrinic acid a,c-diamide synthase CbiA (NCBI), at 3,871,656 to 3,873,038
_A3359
Rru_A3360: Rru_A3360 - Electron transport protein SCO1/SenC (NCBI), at 3,873,035 to 3,873,667
_A3360
Rru_A3361: Rru_A3361 - hypothetical protein (NCBI), at 3,873,702 to 3,874,469
_A3361
Rru_A3362: Rru_A3362 - Uroporphyrin-III C-methyltransferase-like (NCBI), at 3,874,488 to 3,875,363
_A3362
Position (kb)
3873
3874 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3872.212 kb on + strand, within Rru_A3359 at 3872.342 kb on + strand, within Rru_A3359 at 3872.342 kb on + strand, within Rru_A3359 at 3872.343 kb on - strand, within Rru_A3359 at 3872.343 kb on - strand, within Rru_A3359 at 3872.471 kb on + strand, within Rru_A3359 at 3872.471 kb on + strand, within Rru_A3359 at 3872.472 kb on - strand, within Rru_A3359 at 3872.472 kb on - strand, within Rru_A3359 at 3872.802 kb on + strand, within Rru_A3359 at 3872.826 kb on - strand, within Rru_A3359 at 3872.826 kb on - strand, within Rru_A3359 at 3872.881 kb on + strand, within Rru_A3359 at 3872.881 kb on + strand, within Rru_A3359 at 3872.881 kb on + strand, within Rru_A3359 at 3872.882 kb on - strand, within Rru_A3359 at 3872.882 kb on - strand, within Rru_A3359 at 3872.951 kb on + strand at 3872.952 kb on - strand at 3872.952 kb on - strand at 3872.952 kb on - strand at 3873.141 kb on + strand, within Rru_A3360 at 3873.142 kb on - strand, within Rru_A3360 at 3873.142 kb on - strand, within Rru_A3360 at 3873.142 kb on - strand, within Rru_A3360 at 3873.142 kb on - strand, within Rru_A3360 at 3873.168 kb on + strand, within Rru_A3360 at 3873.204 kb on + strand, within Rru_A3360 at 3873.204 kb on + strand, within Rru_A3360 at 3873.205 kb on - strand, within Rru_A3360 at 3873.205 kb on - strand, within Rru_A3360 at 3873.211 kb on + strand, within Rru_A3360 at 3873.211 kb on + strand, within Rru_A3360 at 3873.212 kb on - strand, within Rru_A3360 at 3873.212 kb on - strand, within Rru_A3360 at 3873.213 kb on + strand, within Rru_A3360 at 3873.213 kb on + strand, within Rru_A3360 at 3873.213 kb on + strand, within Rru_A3360 at 3873.213 kb on + strand, within Rru_A3360 at 3873.214 kb on - strand, within Rru_A3360 at 3873.214 kb on - strand, within Rru_A3360 at 3873.429 kb on + strand, within Rru_A3360 at 3873.429 kb on + strand, within Rru_A3360 at 3873.429 kb on + strand, within Rru_A3360 at 3873.430 kb on - strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.433 kb on + strand, within Rru_A3360 at 3873.434 kb on - strand, within Rru_A3360 at 3873.434 kb on - strand, within Rru_A3360 at 3873.434 kb on - strand, within Rru_A3360 at 3873.434 kb on - strand, within Rru_A3360 at 3873.445 kb on - strand, within Rru_A3360 at 3873.482 kb on - strand, within Rru_A3360 at 3874.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,872,212 + Rru_A3359 0.40 -0.9 3,872,342 + Rru_A3359 0.50 +0.1 3,872,342 + Rru_A3359 0.50 +0.1 3,872,343 - Rru_A3359 0.50 +0.1 3,872,343 - Rru_A3359 0.50 -0.9 3,872,471 + Rru_A3359 0.59 +0.1 3,872,471 + Rru_A3359 0.59 -0.9 3,872,472 - Rru_A3359 0.59 +0.1 3,872,472 - Rru_A3359 0.59 -1.9 3,872,802 + Rru_A3359 0.83 +0.1 3,872,826 - Rru_A3359 0.85 +0.1 3,872,826 - Rru_A3359 0.85 -2.5 3,872,881 + Rru_A3359 0.89 -0.5 3,872,881 + Rru_A3359 0.89 -2.5 3,872,881 + Rru_A3359 0.89 -0.9 3,872,882 - Rru_A3359 0.89 +0.1 3,872,882 - Rru_A3359 0.89 -1.3 3,872,951 + +0.1 3,872,952 - -0.5 3,872,952 - +0.1 3,872,952 - -0.9 3,873,141 + Rru_A3360 0.17 -2.3 3,873,142 - Rru_A3360 0.17 -2.1 3,873,142 - Rru_A3360 0.17 -0.8 3,873,142 - Rru_A3360 0.17 -1.9 3,873,142 - Rru_A3360 0.17 +0.1 3,873,168 + Rru_A3360 0.21 +0.1 3,873,204 + Rru_A3360 0.27 +0.1 3,873,204 + Rru_A3360 0.27 +0.1 3,873,205 - Rru_A3360 0.27 -2.3 3,873,205 - Rru_A3360 0.27 -1.9 3,873,211 + Rru_A3360 0.28 -1.9 3,873,211 + Rru_A3360 0.28 -3.3 3,873,212 - Rru_A3360 0.28 +0.1 3,873,212 - Rru_A3360 0.28 -1.9 3,873,213 + Rru_A3360 0.28 -0.9 3,873,213 + Rru_A3360 0.28 -3.6 3,873,213 + Rru_A3360 0.28 -0.4 3,873,213 + Rru_A3360 0.28 -0.9 3,873,214 - Rru_A3360 0.28 -2.3 3,873,214 - Rru_A3360 0.28 -0.5 3,873,429 + Rru_A3360 0.62 +0.1 3,873,429 + Rru_A3360 0.62 +0.1 3,873,429 + Rru_A3360 0.62 -1.5 3,873,430 - Rru_A3360 0.62 +0.1 3,873,433 + Rru_A3360 0.63 -0.9 3,873,433 + Rru_A3360 0.63 -0.4 3,873,433 + Rru_A3360 0.63 -1.9 3,873,433 + Rru_A3360 0.63 -1.9 3,873,433 + Rru_A3360 0.63 +0.1 3,873,433 + Rru_A3360 0.63 -2.8 3,873,433 + Rru_A3360 0.63 +0.1 3,873,433 + Rru_A3360 0.63 +0.1 3,873,433 + Rru_A3360 0.63 -2.9 3,873,433 + Rru_A3360 0.63 +0.1 3,873,434 - Rru_A3360 0.63 -1.9 3,873,434 - Rru_A3360 0.63 -2.9 3,873,434 - Rru_A3360 0.63 -2.9 3,873,434 - Rru_A3360 0.63 -3.3 3,873,445 - Rru_A3360 0.65 -0.9 3,873,482 - Rru_A3360 0.71 -2.0 3,874,490 - +1.1
Or see this region's nucleotide sequence