Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3360

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3359 and Rru_A3360 overlap by 4 nucleotidesRru_A3360 and Rru_A3361 are separated by 34 nucleotidesRru_A3361 and Rru_A3362 are separated by 18 nucleotides Rru_A3359: Rru_A3359 - Cobyrinic acid a,c-diamide synthase CbiA (NCBI), at 3,871,656 to 3,873,038 _A3359 Rru_A3360: Rru_A3360 - Electron transport protein SCO1/SenC (NCBI), at 3,873,035 to 3,873,667 _A3360 Rru_A3361: Rru_A3361 - hypothetical protein (NCBI), at 3,873,702 to 3,874,469 _A3361 Rru_A3362: Rru_A3362 - Uroporphyrin-III C-methyltransferase-like (NCBI), at 3,874,488 to 3,875,363 _A3362 Position (kb) 3873 3874Strain fitness (log2 ratio) -3 -2 -1 0 1at 3872.212 kb on + strand, within Rru_A3359at 3872.342 kb on + strand, within Rru_A3359at 3872.342 kb on + strand, within Rru_A3359at 3872.343 kb on - strand, within Rru_A3359at 3872.343 kb on - strand, within Rru_A3359at 3872.471 kb on + strand, within Rru_A3359at 3872.471 kb on + strand, within Rru_A3359at 3872.472 kb on - strand, within Rru_A3359at 3872.472 kb on - strand, within Rru_A3359at 3872.802 kb on + strand, within Rru_A3359at 3872.826 kb on - strand, within Rru_A3359at 3872.826 kb on - strand, within Rru_A3359at 3872.881 kb on + strand, within Rru_A3359at 3872.881 kb on + strand, within Rru_A3359at 3872.881 kb on + strand, within Rru_A3359at 3872.882 kb on - strand, within Rru_A3359at 3872.882 kb on - strand, within Rru_A3359at 3872.951 kb on + strandat 3872.952 kb on - strandat 3872.952 kb on - strandat 3872.952 kb on - strandat 3873.141 kb on + strand, within Rru_A3360at 3873.142 kb on - strand, within Rru_A3360at 3873.142 kb on - strand, within Rru_A3360at 3873.142 kb on - strand, within Rru_A3360at 3873.142 kb on - strand, within Rru_A3360at 3873.168 kb on + strand, within Rru_A3360at 3873.204 kb on + strand, within Rru_A3360at 3873.204 kb on + strand, within Rru_A3360at 3873.205 kb on - strand, within Rru_A3360at 3873.205 kb on - strand, within Rru_A3360at 3873.211 kb on + strand, within Rru_A3360at 3873.211 kb on + strand, within Rru_A3360at 3873.212 kb on - strand, within Rru_A3360at 3873.212 kb on - strand, within Rru_A3360at 3873.213 kb on + strand, within Rru_A3360at 3873.213 kb on + strand, within Rru_A3360at 3873.213 kb on + strand, within Rru_A3360at 3873.213 kb on + strand, within Rru_A3360at 3873.214 kb on - strand, within Rru_A3360at 3873.214 kb on - strand, within Rru_A3360at 3873.429 kb on + strand, within Rru_A3360at 3873.429 kb on + strand, within Rru_A3360at 3873.429 kb on + strand, within Rru_A3360at 3873.430 kb on - strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.433 kb on + strand, within Rru_A3360at 3873.434 kb on - strand, within Rru_A3360at 3873.434 kb on - strand, within Rru_A3360at 3873.434 kb on - strand, within Rru_A3360at 3873.434 kb on - strand, within Rru_A3360at 3873.445 kb on - strand, within Rru_A3360at 3873.482 kb on - strand, within Rru_A3360at 3874.490 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,872,212 + Rru_A3359 0.40 -0.9
3,872,342 + Rru_A3359 0.50 +0.1
3,872,342 + Rru_A3359 0.50 +0.1
3,872,343 - Rru_A3359 0.50 +0.1
3,872,343 - Rru_A3359 0.50 -0.9
3,872,471 + Rru_A3359 0.59 +0.1
3,872,471 + Rru_A3359 0.59 -0.9
3,872,472 - Rru_A3359 0.59 +0.1
3,872,472 - Rru_A3359 0.59 -1.9
3,872,802 + Rru_A3359 0.83 +0.1
3,872,826 - Rru_A3359 0.85 +0.1
3,872,826 - Rru_A3359 0.85 -2.5
3,872,881 + Rru_A3359 0.89 -0.5
3,872,881 + Rru_A3359 0.89 -2.5
3,872,881 + Rru_A3359 0.89 -0.9
3,872,882 - Rru_A3359 0.89 +0.1
3,872,882 - Rru_A3359 0.89 -1.3
3,872,951 + +0.1
3,872,952 - -0.5
3,872,952 - +0.1
3,872,952 - -0.9
3,873,141 + Rru_A3360 0.17 -2.3
3,873,142 - Rru_A3360 0.17 -2.1
3,873,142 - Rru_A3360 0.17 -0.8
3,873,142 - Rru_A3360 0.17 -1.9
3,873,142 - Rru_A3360 0.17 +0.1
3,873,168 + Rru_A3360 0.21 +0.1
3,873,204 + Rru_A3360 0.27 +0.1
3,873,204 + Rru_A3360 0.27 +0.1
3,873,205 - Rru_A3360 0.27 -2.3
3,873,205 - Rru_A3360 0.27 -1.9
3,873,211 + Rru_A3360 0.28 -1.9
3,873,211 + Rru_A3360 0.28 -3.3
3,873,212 - Rru_A3360 0.28 +0.1
3,873,212 - Rru_A3360 0.28 -1.9
3,873,213 + Rru_A3360 0.28 -0.9
3,873,213 + Rru_A3360 0.28 -3.6
3,873,213 + Rru_A3360 0.28 -0.4
3,873,213 + Rru_A3360 0.28 -0.9
3,873,214 - Rru_A3360 0.28 -2.3
3,873,214 - Rru_A3360 0.28 -0.5
3,873,429 + Rru_A3360 0.62 +0.1
3,873,429 + Rru_A3360 0.62 +0.1
3,873,429 + Rru_A3360 0.62 -1.5
3,873,430 - Rru_A3360 0.62 +0.1
3,873,433 + Rru_A3360 0.63 -0.9
3,873,433 + Rru_A3360 0.63 -0.4
3,873,433 + Rru_A3360 0.63 -1.9
3,873,433 + Rru_A3360 0.63 -1.9
3,873,433 + Rru_A3360 0.63 +0.1
3,873,433 + Rru_A3360 0.63 -2.8
3,873,433 + Rru_A3360 0.63 +0.1
3,873,433 + Rru_A3360 0.63 +0.1
3,873,433 + Rru_A3360 0.63 -2.9
3,873,433 + Rru_A3360 0.63 +0.1
3,873,434 - Rru_A3360 0.63 -1.9
3,873,434 - Rru_A3360 0.63 -2.9
3,873,434 - Rru_A3360 0.63 -2.9
3,873,434 - Rru_A3360 0.63 -3.3
3,873,445 - Rru_A3360 0.65 -0.9
3,873,482 - Rru_A3360 0.71 -2.0
3,874,490 - +1.1

Or see this region's nucleotide sequence