Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3285 and Rru_A3286 are separated by 451 nucleotides Rru_A3286 and Rru_A3287 are separated by 14 nucleotides Rru_A3287 and Rru_A3288 are separated by 95 nucleotides
Rru_A3285: Rru_A3285 - Response regulator receiver domain protein (CheY) (NCBI), at 3,781,210 to 3,782,007
_A3285
Rru_A3286: Rru_A3286 - hypothetical protein (NCBI), at 3,782,459 to 3,782,908
_A3286
Rru_A3287: Rru_A3287 - Sigma-24 (FecI) (NCBI), at 3,782,923 to 3,783,759
_A3287
Rru_A3288: Rru_A3288 - Signal Transduction Histidine Kinase (NCBI), at 3,783,855 to 3,785,843
_A3288
Position (kb)
3782
3783 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3781.537 kb on - strand, within Rru_A3285 at 3781.815 kb on + strand, within Rru_A3285 at 3781.815 kb on + strand, within Rru_A3285 at 3781.816 kb on - strand, within Rru_A3285 at 3781.830 kb on - strand, within Rru_A3285 at 3782.024 kb on + strand at 3782.025 kb on - strand at 3782.025 kb on - strand at 3782.030 kb on + strand at 3782.031 kb on - strand at 3782.031 kb on - strand at 3782.065 kb on - strand at 3782.140 kb on + strand at 3782.301 kb on - strand at 3782.357 kb on + strand at 3782.386 kb on + strand at 3782.386 kb on + strand at 3783.335 kb on - strand, within Rru_A3287 at 3783.830 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,781,537 - Rru_A3285 0.41 -1.3 3,781,815 + Rru_A3285 0.76 +0.0 3,781,815 + Rru_A3285 0.76 +0.0 3,781,816 - Rru_A3285 0.76 +0.0 3,781,830 - Rru_A3285 0.78 +0.0 3,782,024 + +0.0 3,782,025 - -3.0 3,782,025 - +0.0 3,782,030 + +0.0 3,782,031 - +1.0 3,782,031 - -1.6 3,782,065 - +0.0 3,782,140 + +0.0 3,782,301 - -0.5 3,782,357 + -1.0 3,782,386 + -1.0 3,782,386 + -1.0 3,783,335 - Rru_A3287 0.49 -2.0 3,783,830 + +0.0
Or see this region's nucleotide sequence