Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3157

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3156 and Rru_A3157 are separated by 148 nucleotidesRru_A3157 and Rru_A3158 are separated by 182 nucleotidesRru_A3158 and Rru_A3159 are separated by 66 nucleotides Rru_A3156: Rru_A3156 - von Willebrand factor, type A (NCBI), at 3,646,322 to 3,648,049 _A3156 Rru_A3157: Rru_A3157 - hypothetical protein (NCBI), at 3,648,198 to 3,649,415 _A3157 Rru_A3158: Rru_A3158 - hypothetical protein (NCBI), at 3,649,598 to 3,650,047 _A3158 Rru_A3159: Rru_A3159 - General substrate transporter (NCBI), at 3,650,114 to 3,651,400 _A3159 Position (kb) 3648 3649 3650Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 3647.269 kb on + strand, within Rru_A3156at 3647.644 kb on - strand, within Rru_A3156at 3647.668 kb on + strand, within Rru_A3156at 3648.093 kb on + strandat 3648.094 kb on - strandat 3648.132 kb on - strandat 3648.197 kb on + strandat 3648.426 kb on + strand, within Rru_A3157at 3649.233 kb on + strand, within Rru_A3157at 3649.233 kb on + strand, within Rru_A3157at 3649.234 kb on - strand, within Rru_A3157at 3649.234 kb on - strand, within Rru_A3157at 3649.343 kb on + strandat 3649.492 kb on + strandat 3649.492 kb on + strandat 3649.492 kb on + strandat 3649.493 kb on - strandat 3649.493 kb on - strandat 3649.493 kb on - strandat 3649.496 kb on + strandat 3649.496 kb on + strandat 3649.496 kb on + strandat 3649.496 kb on + strandat 3649.497 kb on - strandat 3649.497 kb on - strandat 3649.497 kb on - strandat 3649.505 kb on + strandat 3649.505 kb on + strandat 3649.505 kb on + strandat 3649.505 kb on + strandat 3649.505 kb on + strandat 3649.506 kb on - strandat 3649.506 kb on - strandat 3649.764 kb on - strand, within Rru_A3158at 3649.764 kb on - strand, within Rru_A3158at 3649.764 kb on - strand, within Rru_A3158at 3649.796 kb on + strand, within Rru_A3158at 3649.796 kb on + strand, within Rru_A3158at 3650.056 kb on + strandat 3650.056 kb on + strandat 3650.077 kb on + strandat 3650.078 kb on - strandat 3650.116 kb on - strandat 3650.193 kb on + strandat 3650.193 kb on + strandat 3650.193 kb on + strandat 3650.193 kb on + strandat 3650.194 kb on - strandat 3650.194 kb on - strandat 3650.194 kb on - strandat 3650.194 kb on - strandat 3650.194 kb on - strandat 3650.194 kb on - strandat 3650.289 kb on + strand, within Rru_A3159at 3650.289 kb on + strand, within Rru_A3159at 3650.289 kb on + strand, within Rru_A3159at 3650.289 kb on + strand, within Rru_A3159at 3650.290 kb on - strand, within Rru_A3159at 3650.290 kb on - strand, within Rru_A3159at 3650.309 kb on - strand, within Rru_A3159at 3650.309 kb on - strand, within Rru_A3159at 3650.310 kb on + strand, within Rru_A3159at 3650.311 kb on - strand, within Rru_A3159

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,647,269 + Rru_A3156 0.55 +0.1
3,647,644 - Rru_A3156 0.77 +0.1
3,647,668 + Rru_A3156 0.78 +0.1
3,648,093 + +0.1
3,648,094 - -1.6
3,648,132 - -1.9
3,648,197 + +0.1
3,648,426 + Rru_A3157 0.19 -3.4
3,649,233 + Rru_A3157 0.85 -4.7
3,649,233 + Rru_A3157 0.85 -3.7
3,649,234 - Rru_A3157 0.85 -1.4
3,649,234 - Rru_A3157 0.85 +0.1
3,649,343 + +0.1
3,649,492 + -0.9
3,649,492 + +0.6
3,649,492 + -1.5
3,649,493 - -0.9
3,649,493 - -2.9
3,649,493 - -1.9
3,649,496 + -1.4
3,649,496 + -0.9
3,649,496 + +1.6
3,649,496 + +0.1
3,649,497 - -1.5
3,649,497 - +0.1
3,649,497 - +0.1
3,649,505 + -1.4
3,649,505 + -3.4
3,649,505 + +0.1
3,649,505 + -0.5
3,649,505 + +0.1
3,649,506 - +3.2
3,649,506 - +2.4
3,649,764 - Rru_A3158 0.37 -1.5
3,649,764 - Rru_A3158 0.37 -0.9
3,649,764 - Rru_A3158 0.37 +0.2
3,649,796 + Rru_A3158 0.44 -0.9
3,649,796 + Rru_A3158 0.44 -1.5
3,650,056 + -1.3
3,650,056 + -1.3
3,650,077 + -1.5
3,650,078 - -0.9
3,650,116 - +0.1
3,650,193 + -0.9
3,650,193 + -1.3
3,650,193 + -1.8
3,650,193 + -1.4
3,650,194 - -2.5
3,650,194 - +0.5
3,650,194 - -0.3
3,650,194 - +0.1
3,650,194 - -0.9
3,650,194 - +1.1
3,650,289 + Rru_A3159 0.14 +1.6
3,650,289 + Rru_A3159 0.14 +1.1
3,650,289 + Rru_A3159 0.14 -0.9
3,650,289 + Rru_A3159 0.14 -2.9
3,650,290 - Rru_A3159 0.14 +0.7
3,650,290 - Rru_A3159 0.14 +0.1
3,650,309 - Rru_A3159 0.15 +0.1
3,650,309 - Rru_A3159 0.15 -3.4
3,650,310 + Rru_A3159 0.15 -0.9
3,650,311 - Rru_A3159 0.15 -0.9

Or see this region's nucleotide sequence