Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3156 and Rru_A3157 are separated by 148 nucleotides Rru_A3157 and Rru_A3158 are separated by 182 nucleotides Rru_A3158 and Rru_A3159 are separated by 66 nucleotides
Rru_A3156: Rru_A3156 - von Willebrand factor, type A (NCBI), at 3,646,322 to 3,648,049
_A3156
Rru_A3157: Rru_A3157 - hypothetical protein (NCBI), at 3,648,198 to 3,649,415
_A3157
Rru_A3158: Rru_A3158 - hypothetical protein (NCBI), at 3,649,598 to 3,650,047
_A3158
Rru_A3159: Rru_A3159 - General substrate transporter (NCBI), at 3,650,114 to 3,651,400
_A3159
Position (kb)
3648
3649
3650 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3647.269 kb on + strand, within Rru_A3156 at 3647.644 kb on - strand, within Rru_A3156 at 3647.668 kb on + strand, within Rru_A3156 at 3648.093 kb on + strand at 3648.094 kb on - strand at 3648.132 kb on - strand at 3648.197 kb on + strand at 3648.426 kb on + strand, within Rru_A3157 at 3649.233 kb on + strand, within Rru_A3157 at 3649.233 kb on + strand, within Rru_A3157 at 3649.234 kb on - strand, within Rru_A3157 at 3649.234 kb on - strand, within Rru_A3157 at 3649.343 kb on + strand at 3649.492 kb on + strand at 3649.492 kb on + strand at 3649.492 kb on + strand at 3649.493 kb on - strand at 3649.493 kb on - strand at 3649.493 kb on - strand at 3649.496 kb on + strand at 3649.496 kb on + strand at 3649.496 kb on + strand at 3649.496 kb on + strand at 3649.497 kb on - strand at 3649.497 kb on - strand at 3649.497 kb on - strand at 3649.505 kb on + strand at 3649.505 kb on + strand at 3649.505 kb on + strand at 3649.505 kb on + strand at 3649.505 kb on + strand at 3649.506 kb on - strand at 3649.506 kb on - strand at 3649.764 kb on - strand, within Rru_A3158 at 3649.764 kb on - strand, within Rru_A3158 at 3649.764 kb on - strand, within Rru_A3158 at 3649.796 kb on + strand, within Rru_A3158 at 3649.796 kb on + strand, within Rru_A3158 at 3650.056 kb on + strand at 3650.056 kb on + strand at 3650.077 kb on + strand at 3650.078 kb on - strand at 3650.116 kb on - strand at 3650.193 kb on + strand at 3650.193 kb on + strand at 3650.193 kb on + strand at 3650.193 kb on + strand at 3650.194 kb on - strand at 3650.194 kb on - strand at 3650.194 kb on - strand at 3650.194 kb on - strand at 3650.194 kb on - strand at 3650.194 kb on - strand at 3650.289 kb on + strand, within Rru_A3159 at 3650.289 kb on + strand, within Rru_A3159 at 3650.289 kb on + strand, within Rru_A3159 at 3650.289 kb on + strand, within Rru_A3159 at 3650.290 kb on - strand, within Rru_A3159 at 3650.290 kb on - strand, within Rru_A3159 at 3650.309 kb on - strand, within Rru_A3159 at 3650.309 kb on - strand, within Rru_A3159 at 3650.310 kb on + strand, within Rru_A3159 at 3650.311 kb on - strand, within Rru_A3159
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,647,269 + Rru_A3156 0.55 +0.1 3,647,644 - Rru_A3156 0.77 +0.1 3,647,668 + Rru_A3156 0.78 +0.1 3,648,093 + +0.1 3,648,094 - -1.6 3,648,132 - -1.9 3,648,197 + +0.1 3,648,426 + Rru_A3157 0.19 -3.4 3,649,233 + Rru_A3157 0.85 -4.7 3,649,233 + Rru_A3157 0.85 -3.7 3,649,234 - Rru_A3157 0.85 -1.4 3,649,234 - Rru_A3157 0.85 +0.1 3,649,343 + +0.1 3,649,492 + -0.9 3,649,492 + +0.6 3,649,492 + -1.5 3,649,493 - -0.9 3,649,493 - -2.9 3,649,493 - -1.9 3,649,496 + -1.4 3,649,496 + -0.9 3,649,496 + +1.6 3,649,496 + +0.1 3,649,497 - -1.5 3,649,497 - +0.1 3,649,497 - +0.1 3,649,505 + -1.4 3,649,505 + -3.4 3,649,505 + +0.1 3,649,505 + -0.5 3,649,505 + +0.1 3,649,506 - +3.2 3,649,506 - +2.4 3,649,764 - Rru_A3158 0.37 -1.5 3,649,764 - Rru_A3158 0.37 -0.9 3,649,764 - Rru_A3158 0.37 +0.2 3,649,796 + Rru_A3158 0.44 -0.9 3,649,796 + Rru_A3158 0.44 -1.5 3,650,056 + -1.3 3,650,056 + -1.3 3,650,077 + -1.5 3,650,078 - -0.9 3,650,116 - +0.1 3,650,193 + -0.9 3,650,193 + -1.3 3,650,193 + -1.8 3,650,193 + -1.4 3,650,194 - -2.5 3,650,194 - +0.5 3,650,194 - -0.3 3,650,194 - +0.1 3,650,194 - -0.9 3,650,194 - +1.1 3,650,289 + Rru_A3159 0.14 +1.6 3,650,289 + Rru_A3159 0.14 +1.1 3,650,289 + Rru_A3159 0.14 -0.9 3,650,289 + Rru_A3159 0.14 -2.9 3,650,290 - Rru_A3159 0.14 +0.7 3,650,290 - Rru_A3159 0.14 +0.1 3,650,309 - Rru_A3159 0.15 +0.1 3,650,309 - Rru_A3159 0.15 -3.4 3,650,310 + Rru_A3159 0.15 -0.9 3,650,311 - Rru_A3159 0.15 -0.9
Or see this region's nucleotide sequence