Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3067 and Rru_A3068 are separated by 75 nucleotides Rru_A3068 and Rru_A3069 are separated by 4 nucleotides Rru_A3069 and Rru_A3070 are separated by 309 nucleotides Rru_A3070 and Rru_A3071 are separated by 133 nucleotides
Rru_A3067: Rru_A3067 - Transcriptional Regulator, TetR family (NCBI), at 3,533,037 to 3,533,636
_A3067
Rru_A3068: Rru_A3068 - Plasmid maintenance system antidote protein (NCBI), at 3,533,712 to 3,533,999
_A3068
Rru_A3069: Rru_A3069 - Plasmid maintenance system killer (NCBI), at 3,534,004 to 3,534,282
_A3069
Rru_A3070: Rru_A3070 - Transcriptional Regulator, AsnC family (NCBI), at 3,534,592 to 3,535,068
_A3070
Rru_A3071: Rru_A3071 - Protein of unknown function DUF6, transmembrane (NCBI), at 3,535,202 to 3,536,137
_A3071
Position (kb)
3534
3535
3536 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3533.606 kb on + strand at 3533.607 kb on - strand at 3533.607 kb on - strand at 3533.634 kb on + strand at 3533.634 kb on + strand at 3533.635 kb on - strand at 3533.688 kb on - strand at 3534.011 kb on + strand at 3534.032 kb on + strand, within Rru_A3069 at 3534.032 kb on + strand, within Rru_A3069 at 3534.033 kb on - strand, within Rru_A3069 at 3534.033 kb on - strand, within Rru_A3069 at 3534.033 kb on - strand, within Rru_A3069 at 3534.033 kb on - strand, within Rru_A3069 at 3534.033 kb on - strand, within Rru_A3069 at 3534.346 kb on - strand at 3534.346 kb on - strand at 3534.395 kb on + strand at 3534.395 kb on + strand at 3534.454 kb on + strand at 3534.454 kb on + strand at 3534.454 kb on + strand at 3534.454 kb on + strand at 3534.492 kb on + strand at 3534.493 kb on - strand at 3534.684 kb on + strand, within Rru_A3070 at 3534.684 kb on + strand, within Rru_A3070 at 3534.684 kb on + strand, within Rru_A3070 at 3534.685 kb on - strand, within Rru_A3070 at 3534.707 kb on + strand, within Rru_A3070 at 3534.708 kb on - strand, within Rru_A3070 at 3534.856 kb on - strand, within Rru_A3070 at 3534.856 kb on - strand, within Rru_A3070 at 3534.857 kb on + strand, within Rru_A3070 at 3534.857 kb on + strand, within Rru_A3070 at 3534.857 kb on + strand, within Rru_A3070 at 3534.857 kb on + strand, within Rru_A3070 at 3534.858 kb on - strand, within Rru_A3070 at 3534.858 kb on - strand, within Rru_A3070 at 3534.858 kb on - strand, within Rru_A3070 at 3534.858 kb on - strand, within Rru_A3070 at 3534.858 kb on - strand, within Rru_A3070 at 3535.068 kb on + strand at 3535.370 kb on + strand, within Rru_A3071 at 3535.736 kb on + strand, within Rru_A3071 at 3535.736 kb on + strand, within Rru_A3071 at 3535.736 kb on + strand, within Rru_A3071 at 3535.736 kb on + strand, within Rru_A3071 at 3535.737 kb on - strand, within Rru_A3071 at 3535.737 kb on - strand, within Rru_A3071 at 3535.737 kb on - strand, within Rru_A3071 at 3535.737 kb on - strand, within Rru_A3071 at 3535.737 kb on - strand, within Rru_A3071 at 3535.738 kb on + strand, within Rru_A3071 at 3535.899 kb on + strand, within Rru_A3071 at 3535.900 kb on - strand, within Rru_A3071 at 3535.912 kb on + strand, within Rru_A3071 at 3535.913 kb on - strand, within Rru_A3071
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,533,606 + -1.6 3,533,607 - -1.0 3,533,607 - -2.0 3,533,634 + +0.0 3,533,634 + -2.4 3,533,635 - +0.0 3,533,688 - -2.0 3,534,011 + +0.0 3,534,032 + Rru_A3069 0.10 +0.0 3,534,032 + Rru_A3069 0.10 -1.0 3,534,033 - Rru_A3069 0.10 +0.0 3,534,033 - Rru_A3069 0.10 -3.7 3,534,033 - Rru_A3069 0.10 +0.0 3,534,033 - Rru_A3069 0.10 -1.5 3,534,033 - Rru_A3069 0.10 -0.9 3,534,346 - -1.0 3,534,346 - -1.0 3,534,395 + -0.8 3,534,395 + -1.6 3,534,454 + -2.0 3,534,454 + -2.7 3,534,454 + -2.8 3,534,454 + +0.0 3,534,492 + +0.0 3,534,493 - +2.0 3,534,684 + Rru_A3070 0.19 -2.5 3,534,684 + Rru_A3070 0.19 +0.0 3,534,684 + Rru_A3070 0.19 -2.9 3,534,685 - Rru_A3070 0.19 +0.0 3,534,707 + Rru_A3070 0.24 -2.3 3,534,708 - Rru_A3070 0.24 -2.2 3,534,856 - Rru_A3070 0.55 -1.0 3,534,856 - Rru_A3070 0.55 -1.8 3,534,857 + Rru_A3070 0.56 +0.0 3,534,857 + Rru_A3070 0.56 +0.0 3,534,857 + Rru_A3070 0.56 -2.3 3,534,857 + Rru_A3070 0.56 -1.5 3,534,858 - Rru_A3070 0.56 -2.1 3,534,858 - Rru_A3070 0.56 -1.7 3,534,858 - Rru_A3070 0.56 -1.8 3,534,858 - Rru_A3070 0.56 -1.7 3,534,858 - Rru_A3070 0.56 -2.7 3,535,068 + +0.0 3,535,370 + Rru_A3071 0.18 -0.9 3,535,736 + Rru_A3071 0.57 +0.1 3,535,736 + Rru_A3071 0.57 -0.9 3,535,736 + Rru_A3071 0.57 -2.9 3,535,736 + Rru_A3071 0.57 -0.9 3,535,737 - Rru_A3071 0.57 -0.9 3,535,737 - Rru_A3071 0.57 +0.1 3,535,737 - Rru_A3071 0.57 +0.1 3,535,737 - Rru_A3071 0.57 -1.9 3,535,737 - Rru_A3071 0.57 -1.3 3,535,738 + Rru_A3071 0.57 -2.3 3,535,899 + Rru_A3071 0.74 +0.1 3,535,900 - Rru_A3071 0.75 +0.1 3,535,912 + Rru_A3071 0.76 -1.2 3,535,913 - Rru_A3071 0.76 -0.5
Or see this region's nucleotide sequence