Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3070

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3067 and Rru_A3068 are separated by 75 nucleotidesRru_A3068 and Rru_A3069 are separated by 4 nucleotidesRru_A3069 and Rru_A3070 are separated by 309 nucleotidesRru_A3070 and Rru_A3071 are separated by 133 nucleotides Rru_A3067: Rru_A3067 - Transcriptional Regulator, TetR family (NCBI), at 3,533,037 to 3,533,636 _A3067 Rru_A3068: Rru_A3068 - Plasmid maintenance system antidote protein (NCBI), at 3,533,712 to 3,533,999 _A3068 Rru_A3069: Rru_A3069 - Plasmid maintenance system killer (NCBI), at 3,534,004 to 3,534,282 _A3069 Rru_A3070: Rru_A3070 - Transcriptional Regulator, AsnC family (NCBI), at 3,534,592 to 3,535,068 _A3070 Rru_A3071: Rru_A3071 - Protein of unknown function DUF6, transmembrane (NCBI), at 3,535,202 to 3,536,137 _A3071 Position (kb) 3534 3535 3536Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3533.606 kb on + strandat 3533.607 kb on - strandat 3533.607 kb on - strandat 3533.634 kb on + strandat 3533.634 kb on + strandat 3533.635 kb on - strandat 3533.688 kb on - strandat 3534.011 kb on + strandat 3534.032 kb on + strand, within Rru_A3069at 3534.032 kb on + strand, within Rru_A3069at 3534.033 kb on - strand, within Rru_A3069at 3534.033 kb on - strand, within Rru_A3069at 3534.033 kb on - strand, within Rru_A3069at 3534.033 kb on - strand, within Rru_A3069at 3534.033 kb on - strand, within Rru_A3069at 3534.346 kb on - strandat 3534.346 kb on - strandat 3534.395 kb on + strandat 3534.395 kb on + strandat 3534.454 kb on + strandat 3534.454 kb on + strandat 3534.454 kb on + strandat 3534.454 kb on + strandat 3534.492 kb on + strandat 3534.493 kb on - strandat 3534.684 kb on + strand, within Rru_A3070at 3534.684 kb on + strand, within Rru_A3070at 3534.684 kb on + strand, within Rru_A3070at 3534.685 kb on - strand, within Rru_A3070at 3534.707 kb on + strand, within Rru_A3070at 3534.708 kb on - strand, within Rru_A3070at 3534.856 kb on - strand, within Rru_A3070at 3534.856 kb on - strand, within Rru_A3070at 3534.857 kb on + strand, within Rru_A3070at 3534.857 kb on + strand, within Rru_A3070at 3534.857 kb on + strand, within Rru_A3070at 3534.857 kb on + strand, within Rru_A3070at 3534.858 kb on - strand, within Rru_A3070at 3534.858 kb on - strand, within Rru_A3070at 3534.858 kb on - strand, within Rru_A3070at 3534.858 kb on - strand, within Rru_A3070at 3534.858 kb on - strand, within Rru_A3070at 3535.068 kb on + strandat 3535.370 kb on + strand, within Rru_A3071at 3535.736 kb on + strand, within Rru_A3071at 3535.736 kb on + strand, within Rru_A3071at 3535.736 kb on + strand, within Rru_A3071at 3535.736 kb on + strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.737 kb on - strand, within Rru_A3071at 3535.738 kb on + strand, within Rru_A3071at 3535.899 kb on + strand, within Rru_A3071at 3535.900 kb on - strand, within Rru_A3071at 3535.912 kb on + strand, within Rru_A3071at 3535.913 kb on - strand, within Rru_A3071

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,533,606 + -1.6
3,533,607 - -1.0
3,533,607 - -2.0
3,533,634 + +0.0
3,533,634 + -2.4
3,533,635 - +0.0
3,533,688 - -2.0
3,534,011 + +0.0
3,534,032 + Rru_A3069 0.10 +0.0
3,534,032 + Rru_A3069 0.10 -1.0
3,534,033 - Rru_A3069 0.10 +0.0
3,534,033 - Rru_A3069 0.10 -3.7
3,534,033 - Rru_A3069 0.10 +0.0
3,534,033 - Rru_A3069 0.10 -1.5
3,534,033 - Rru_A3069 0.10 -0.9
3,534,346 - -1.0
3,534,346 - -1.0
3,534,395 + -0.8
3,534,395 + -1.6
3,534,454 + -2.0
3,534,454 + -2.7
3,534,454 + -2.8
3,534,454 + +0.0
3,534,492 + +0.0
3,534,493 - +2.0
3,534,684 + Rru_A3070 0.19 -2.5
3,534,684 + Rru_A3070 0.19 +0.0
3,534,684 + Rru_A3070 0.19 -2.9
3,534,685 - Rru_A3070 0.19 +0.0
3,534,707 + Rru_A3070 0.24 -2.3
3,534,708 - Rru_A3070 0.24 -2.2
3,534,856 - Rru_A3070 0.55 -1.0
3,534,856 - Rru_A3070 0.55 -1.8
3,534,857 + Rru_A3070 0.56 +0.0
3,534,857 + Rru_A3070 0.56 +0.0
3,534,857 + Rru_A3070 0.56 -2.3
3,534,857 + Rru_A3070 0.56 -1.5
3,534,858 - Rru_A3070 0.56 -2.1
3,534,858 - Rru_A3070 0.56 -1.7
3,534,858 - Rru_A3070 0.56 -1.8
3,534,858 - Rru_A3070 0.56 -1.7
3,534,858 - Rru_A3070 0.56 -2.7
3,535,068 + +0.0
3,535,370 + Rru_A3071 0.18 -0.9
3,535,736 + Rru_A3071 0.57 +0.1
3,535,736 + Rru_A3071 0.57 -0.9
3,535,736 + Rru_A3071 0.57 -2.9
3,535,736 + Rru_A3071 0.57 -0.9
3,535,737 - Rru_A3071 0.57 -0.9
3,535,737 - Rru_A3071 0.57 +0.1
3,535,737 - Rru_A3071 0.57 +0.1
3,535,737 - Rru_A3071 0.57 -1.9
3,535,737 - Rru_A3071 0.57 -1.3
3,535,738 + Rru_A3071 0.57 -2.3
3,535,899 + Rru_A3071 0.74 +0.1
3,535,900 - Rru_A3071 0.75 +0.1
3,535,912 + Rru_A3071 0.76 -1.2
3,535,913 - Rru_A3071 0.76 -0.5

Or see this region's nucleotide sequence