Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A3009 and Rru_A3010 are separated by 10 nucleotides Rru_A3010 and Rru_A3011 are separated by 110 nucleotides Rru_A3011 and Rru_A3012 are separated by 24 nucleotides Rru_A3012 and Rru_A3013 are separated by 11 nucleotides
Rru_A3009: Rru_A3009 - Aminotransferase class-III (NCBI), at 3,466,179 to 3,467,510
_A3009
Rru_A3010: Rru_A3010 - Transcriptional Regulator, DeoR family (NCBI), at 3,467,521 to 3,468,315
_A3010
Rru_A3011: Rru_A3011 - Isochorismatase hydrolase (NCBI), at 3,468,426 to 3,469,133
_A3011
Rru_A3012: Rru_A3012 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,469,158 to 3,469,961
_A3012
Rru_A3013: Rru_A3013 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,469,973 to 3,470,839
_A3013
Position (kb)
3468
3469
3470 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3467.488 kb on + strand at 3467.488 kb on + strand at 3467.488 kb on + strand at 3467.488 kb on + strand at 3467.488 kb on + strand at 3467.488 kb on + strand at 3467.489 kb on - strand at 3467.489 kb on - strand at 3467.489 kb on - strand at 3467.624 kb on + strand, within Rru_A3010 at 3467.705 kb on + strand, within Rru_A3010 at 3467.705 kb on + strand, within Rru_A3010 at 3467.706 kb on - strand, within Rru_A3010 at 3467.706 kb on - strand, within Rru_A3010 at 3467.786 kb on + strand, within Rru_A3010 at 3467.801 kb on + strand, within Rru_A3010 at 3467.801 kb on + strand, within Rru_A3010 at 3467.802 kb on - strand, within Rru_A3010 at 3467.802 kb on - strand, within Rru_A3010 at 3467.802 kb on - strand, within Rru_A3010 at 3467.846 kb on + strand, within Rru_A3010 at 3467.846 kb on + strand, within Rru_A3010 at 3467.847 kb on - strand, within Rru_A3010 at 3468.119 kb on + strand, within Rru_A3010 at 3468.119 kb on + strand, within Rru_A3010 at 3468.119 kb on + strand, within Rru_A3010 at 3468.120 kb on - strand, within Rru_A3010 at 3468.120 kb on - strand, within Rru_A3010 at 3468.474 kb on + strand at 3468.475 kb on - strand at 3468.475 kb on - strand at 3468.475 kb on - strand at 3468.475 kb on - strand at 3468.546 kb on - strand, within Rru_A3011 at 3468.558 kb on + strand, within Rru_A3011 at 3468.559 kb on - strand, within Rru_A3011 at 3468.559 kb on - strand, within Rru_A3011 at 3468.559 kb on - strand, within Rru_A3011 at 3468.559 kb on - strand, within Rru_A3011 at 3468.609 kb on + strand, within Rru_A3011 at 3468.609 kb on + strand, within Rru_A3011 at 3468.609 kb on + strand, within Rru_A3011 at 3468.609 kb on + strand, within Rru_A3011 at 3469.086 kb on + strand at 3469.086 kb on + strand at 3469.087 kb on - strand at 3469.087 kb on - strand at 3469.122 kb on + strand at 3469.123 kb on - strand at 3469.262 kb on + strand, within Rru_A3012 at 3469.262 kb on + strand, within Rru_A3012 at 3469.263 kb on - strand, within Rru_A3012 at 3469.263 kb on - strand, within Rru_A3012 at 3469.263 kb on - strand, within Rru_A3012 at 3469.283 kb on + strand, within Rru_A3012 at 3469.285 kb on + strand, within Rru_A3012 at 3469.286 kb on - strand, within Rru_A3012 at 3469.286 kb on - strand, within Rru_A3012 at 3469.286 kb on - strand, within Rru_A3012 at 3469.286 kb on - strand, within Rru_A3012 at 3469.322 kb on + strand, within Rru_A3012 at 3469.324 kb on + strand, within Rru_A3012 at 3469.483 kb on + strand, within Rru_A3012 at 3469.483 kb on + strand, within Rru_A3012 at 3469.483 kb on + strand, within Rru_A3012 at 3469.483 kb on + strand, within Rru_A3012 at 3469.484 kb on - strand, within Rru_A3012 at 3469.484 kb on - strand, within Rru_A3012 at 3469.551 kb on - strand, within Rru_A3012 at 3469.551 kb on - strand, within Rru_A3012 at 3469.551 kb on - strand, within Rru_A3012 at 3469.675 kb on + strand, within Rru_A3012 at 3469.754 kb on + strand, within Rru_A3012 at 3469.754 kb on + strand, within Rru_A3012 at 3469.754 kb on + strand, within Rru_A3012 at 3469.755 kb on - strand, within Rru_A3012 at 3469.755 kb on - strand, within Rru_A3012 at 3469.837 kb on + strand, within Rru_A3012 at 3469.885 kb on + strand at 3469.886 kb on - strand at 3469.886 kb on - strand at 3469.886 kb on - strand at 3469.886 kb on - strand at 3469.886 kb on - strand at 3469.955 kb on + strand at 3469.955 kb on + strand at 3469.956 kb on - strand at 3470.091 kb on + strand, within Rru_A3013 at 3470.092 kb on - strand, within Rru_A3013
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,467,488 + +0.0 3,467,488 + +0.0 3,467,488 + -3.3 3,467,488 + -1.5 3,467,488 + -1.0 3,467,488 + -2.3 3,467,489 - +0.0 3,467,489 - -1.5 3,467,489 - +0.0 3,467,624 + Rru_A3010 0.13 +0.0 3,467,705 + Rru_A3010 0.23 +0.0 3,467,705 + Rru_A3010 0.23 -1.0 3,467,706 - Rru_A3010 0.23 +0.0 3,467,706 - Rru_A3010 0.23 -1.5 3,467,786 + Rru_A3010 0.33 +0.0 3,467,801 + Rru_A3010 0.35 -1.0 3,467,801 + Rru_A3010 0.35 +0.0 3,467,802 - Rru_A3010 0.35 -1.0 3,467,802 - Rru_A3010 0.35 -1.0 3,467,802 - Rru_A3010 0.35 +0.0 3,467,846 + Rru_A3010 0.41 +0.0 3,467,846 + Rru_A3010 0.41 +0.0 3,467,847 - Rru_A3010 0.41 +0.0 3,468,119 + Rru_A3010 0.75 +0.0 3,468,119 + Rru_A3010 0.75 -1.5 3,468,119 + Rru_A3010 0.75 +0.0 3,468,120 - Rru_A3010 0.75 -1.5 3,468,120 - Rru_A3010 0.75 +0.0 3,468,474 + -3.2 3,468,475 - -2.3 3,468,475 - +0.0 3,468,475 - -4.1 3,468,475 - -2.1 3,468,546 - Rru_A3011 0.17 -1.6 3,468,558 + Rru_A3011 0.19 -0.3 3,468,559 - Rru_A3011 0.19 +0.0 3,468,559 - Rru_A3011 0.19 -2.0 3,468,559 - Rru_A3011 0.19 -4.0 3,468,559 - Rru_A3011 0.19 -2.6 3,468,609 + Rru_A3011 0.26 +0.0 3,468,609 + Rru_A3011 0.26 +0.0 3,468,609 + Rru_A3011 0.26 -3.3 3,468,609 + Rru_A3011 0.26 -1.0 3,469,086 + +1.3 3,469,086 + +0.0 3,469,087 - +0.0 3,469,087 - +0.0 3,469,122 + -1.3 3,469,123 - +1.0 3,469,262 + Rru_A3012 0.13 -0.7 3,469,262 + Rru_A3012 0.13 -1.6 3,469,263 - Rru_A3012 0.13 -1.3 3,469,263 - Rru_A3012 0.13 +0.0 3,469,263 - Rru_A3012 0.13 +0.0 3,469,283 + Rru_A3012 0.16 -1.7 3,469,285 + Rru_A3012 0.16 -0.5 3,469,286 - Rru_A3012 0.16 +0.0 3,469,286 - Rru_A3012 0.16 -0.9 3,469,286 - Rru_A3012 0.16 -2.7 3,469,286 - Rru_A3012 0.16 -2.4 3,469,322 + Rru_A3012 0.20 +0.0 3,469,324 + Rru_A3012 0.21 -1.3 3,469,483 + Rru_A3012 0.40 -1.3 3,469,483 + Rru_A3012 0.40 -1.6 3,469,483 + Rru_A3012 0.40 -2.3 3,469,483 + Rru_A3012 0.40 -1.3 3,469,484 - Rru_A3012 0.41 -1.8 3,469,484 - Rru_A3012 0.41 -1.5 3,469,551 - Rru_A3012 0.49 -1.4 3,469,551 - Rru_A3012 0.49 +0.0 3,469,551 - Rru_A3012 0.49 -0.4 3,469,675 + Rru_A3012 0.64 -1.0 3,469,754 + Rru_A3012 0.74 +0.0 3,469,754 + Rru_A3012 0.74 -1.3 3,469,754 + Rru_A3012 0.74 -1.7 3,469,755 - Rru_A3012 0.74 -2.2 3,469,755 - Rru_A3012 0.74 -2.0 3,469,837 + Rru_A3012 0.84 +0.0 3,469,885 + -1.4 3,469,886 - -3.6 3,469,886 - -1.3 3,469,886 - +0.0 3,469,886 - -2.3 3,469,886 - +0.0 3,469,955 + +0.4 3,469,955 + +1.0 3,469,956 - -2.3 3,470,091 + Rru_A3013 0.14 +0.0 3,470,092 - Rru_A3013 0.14 +0.0
Or see this region's nucleotide sequence