Strain Fitness in Rhodospirillum rubrum S1H around Rru_A3011

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A3009 and Rru_A3010 are separated by 10 nucleotidesRru_A3010 and Rru_A3011 are separated by 110 nucleotidesRru_A3011 and Rru_A3012 are separated by 24 nucleotidesRru_A3012 and Rru_A3013 are separated by 11 nucleotides Rru_A3009: Rru_A3009 - Aminotransferase class-III (NCBI), at 3,466,179 to 3,467,510 _A3009 Rru_A3010: Rru_A3010 - Transcriptional Regulator, DeoR family (NCBI), at 3,467,521 to 3,468,315 _A3010 Rru_A3011: Rru_A3011 - Isochorismatase hydrolase (NCBI), at 3,468,426 to 3,469,133 _A3011 Rru_A3012: Rru_A3012 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,469,158 to 3,469,961 _A3012 Rru_A3013: Rru_A3013 - Binding-protein-dependent transport systems inner membrane component (NCBI), at 3,469,973 to 3,470,839 _A3013 Position (kb) 3468 3469 3470Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3467.488 kb on + strandat 3467.488 kb on + strandat 3467.488 kb on + strandat 3467.488 kb on + strandat 3467.488 kb on + strandat 3467.488 kb on + strandat 3467.489 kb on - strandat 3467.489 kb on - strandat 3467.489 kb on - strandat 3467.624 kb on + strand, within Rru_A3010at 3467.705 kb on + strand, within Rru_A3010at 3467.705 kb on + strand, within Rru_A3010at 3467.706 kb on - strand, within Rru_A3010at 3467.706 kb on - strand, within Rru_A3010at 3467.786 kb on + strand, within Rru_A3010at 3467.801 kb on + strand, within Rru_A3010at 3467.801 kb on + strand, within Rru_A3010at 3467.802 kb on - strand, within Rru_A3010at 3467.802 kb on - strand, within Rru_A3010at 3467.802 kb on - strand, within Rru_A3010at 3467.846 kb on + strand, within Rru_A3010at 3467.846 kb on + strand, within Rru_A3010at 3467.847 kb on - strand, within Rru_A3010at 3468.119 kb on + strand, within Rru_A3010at 3468.119 kb on + strand, within Rru_A3010at 3468.119 kb on + strand, within Rru_A3010at 3468.120 kb on - strand, within Rru_A3010at 3468.120 kb on - strand, within Rru_A3010at 3468.474 kb on + strandat 3468.475 kb on - strandat 3468.475 kb on - strandat 3468.475 kb on - strandat 3468.475 kb on - strandat 3468.546 kb on - strand, within Rru_A3011at 3468.558 kb on + strand, within Rru_A3011at 3468.559 kb on - strand, within Rru_A3011at 3468.559 kb on - strand, within Rru_A3011at 3468.559 kb on - strand, within Rru_A3011at 3468.559 kb on - strand, within Rru_A3011at 3468.609 kb on + strand, within Rru_A3011at 3468.609 kb on + strand, within Rru_A3011at 3468.609 kb on + strand, within Rru_A3011at 3468.609 kb on + strand, within Rru_A3011at 3469.086 kb on + strandat 3469.086 kb on + strandat 3469.087 kb on - strandat 3469.087 kb on - strandat 3469.122 kb on + strandat 3469.123 kb on - strandat 3469.262 kb on + strand, within Rru_A3012at 3469.262 kb on + strand, within Rru_A3012at 3469.263 kb on - strand, within Rru_A3012at 3469.263 kb on - strand, within Rru_A3012at 3469.263 kb on - strand, within Rru_A3012at 3469.283 kb on + strand, within Rru_A3012at 3469.285 kb on + strand, within Rru_A3012at 3469.286 kb on - strand, within Rru_A3012at 3469.286 kb on - strand, within Rru_A3012at 3469.286 kb on - strand, within Rru_A3012at 3469.286 kb on - strand, within Rru_A3012at 3469.322 kb on + strand, within Rru_A3012at 3469.324 kb on + strand, within Rru_A3012at 3469.483 kb on + strand, within Rru_A3012at 3469.483 kb on + strand, within Rru_A3012at 3469.483 kb on + strand, within Rru_A3012at 3469.483 kb on + strand, within Rru_A3012at 3469.484 kb on - strand, within Rru_A3012at 3469.484 kb on - strand, within Rru_A3012at 3469.551 kb on - strand, within Rru_A3012at 3469.551 kb on - strand, within Rru_A3012at 3469.551 kb on - strand, within Rru_A3012at 3469.675 kb on + strand, within Rru_A3012at 3469.754 kb on + strand, within Rru_A3012at 3469.754 kb on + strand, within Rru_A3012at 3469.754 kb on + strand, within Rru_A3012at 3469.755 kb on - strand, within Rru_A3012at 3469.755 kb on - strand, within Rru_A3012at 3469.837 kb on + strand, within Rru_A3012at 3469.885 kb on + strandat 3469.886 kb on - strandat 3469.886 kb on - strandat 3469.886 kb on - strandat 3469.886 kb on - strandat 3469.886 kb on - strandat 3469.955 kb on + strandat 3469.955 kb on + strandat 3469.956 kb on - strandat 3470.091 kb on + strand, within Rru_A3013at 3470.092 kb on - strand, within Rru_A3013

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,467,488 + +0.0
3,467,488 + +0.0
3,467,488 + -3.3
3,467,488 + -1.5
3,467,488 + -1.0
3,467,488 + -2.3
3,467,489 - +0.0
3,467,489 - -1.5
3,467,489 - +0.0
3,467,624 + Rru_A3010 0.13 +0.0
3,467,705 + Rru_A3010 0.23 +0.0
3,467,705 + Rru_A3010 0.23 -1.0
3,467,706 - Rru_A3010 0.23 +0.0
3,467,706 - Rru_A3010 0.23 -1.5
3,467,786 + Rru_A3010 0.33 +0.0
3,467,801 + Rru_A3010 0.35 -1.0
3,467,801 + Rru_A3010 0.35 +0.0
3,467,802 - Rru_A3010 0.35 -1.0
3,467,802 - Rru_A3010 0.35 -1.0
3,467,802 - Rru_A3010 0.35 +0.0
3,467,846 + Rru_A3010 0.41 +0.0
3,467,846 + Rru_A3010 0.41 +0.0
3,467,847 - Rru_A3010 0.41 +0.0
3,468,119 + Rru_A3010 0.75 +0.0
3,468,119 + Rru_A3010 0.75 -1.5
3,468,119 + Rru_A3010 0.75 +0.0
3,468,120 - Rru_A3010 0.75 -1.5
3,468,120 - Rru_A3010 0.75 +0.0
3,468,474 + -3.2
3,468,475 - -2.3
3,468,475 - +0.0
3,468,475 - -4.1
3,468,475 - -2.1
3,468,546 - Rru_A3011 0.17 -1.6
3,468,558 + Rru_A3011 0.19 -0.3
3,468,559 - Rru_A3011 0.19 +0.0
3,468,559 - Rru_A3011 0.19 -2.0
3,468,559 - Rru_A3011 0.19 -4.0
3,468,559 - Rru_A3011 0.19 -2.6
3,468,609 + Rru_A3011 0.26 +0.0
3,468,609 + Rru_A3011 0.26 +0.0
3,468,609 + Rru_A3011 0.26 -3.3
3,468,609 + Rru_A3011 0.26 -1.0
3,469,086 + +1.3
3,469,086 + +0.0
3,469,087 - +0.0
3,469,087 - +0.0
3,469,122 + -1.3
3,469,123 - +1.0
3,469,262 + Rru_A3012 0.13 -0.7
3,469,262 + Rru_A3012 0.13 -1.6
3,469,263 - Rru_A3012 0.13 -1.3
3,469,263 - Rru_A3012 0.13 +0.0
3,469,263 - Rru_A3012 0.13 +0.0
3,469,283 + Rru_A3012 0.16 -1.7
3,469,285 + Rru_A3012 0.16 -0.5
3,469,286 - Rru_A3012 0.16 +0.0
3,469,286 - Rru_A3012 0.16 -0.9
3,469,286 - Rru_A3012 0.16 -2.7
3,469,286 - Rru_A3012 0.16 -2.4
3,469,322 + Rru_A3012 0.20 +0.0
3,469,324 + Rru_A3012 0.21 -1.3
3,469,483 + Rru_A3012 0.40 -1.3
3,469,483 + Rru_A3012 0.40 -1.6
3,469,483 + Rru_A3012 0.40 -2.3
3,469,483 + Rru_A3012 0.40 -1.3
3,469,484 - Rru_A3012 0.41 -1.8
3,469,484 - Rru_A3012 0.41 -1.5
3,469,551 - Rru_A3012 0.49 -1.4
3,469,551 - Rru_A3012 0.49 +0.0
3,469,551 - Rru_A3012 0.49 -0.4
3,469,675 + Rru_A3012 0.64 -1.0
3,469,754 + Rru_A3012 0.74 +0.0
3,469,754 + Rru_A3012 0.74 -1.3
3,469,754 + Rru_A3012 0.74 -1.7
3,469,755 - Rru_A3012 0.74 -2.2
3,469,755 - Rru_A3012 0.74 -2.0
3,469,837 + Rru_A3012 0.84 +0.0
3,469,885 + -1.4
3,469,886 - -3.6
3,469,886 - -1.3
3,469,886 - +0.0
3,469,886 - -2.3
3,469,886 - +0.0
3,469,955 + +0.4
3,469,955 + +1.0
3,469,956 - -2.3
3,470,091 + Rru_A3013 0.14 +0.0
3,470,092 - Rru_A3013 0.14 +0.0

Or see this region's nucleotide sequence