Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2945

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2944 and Rru_A2945 are separated by 42 nucleotidesRru_A2945 and Rru_A2946 are separated by 84 nucleotides Rru_A2944: Rru_A2944 - ArgK protein (NCBI), at 3,393,358 to 3,394,317 _A2944 Rru_A2945: Rru_A2945 - hypothetical protein (NCBI), at 3,394,360 to 3,394,854 _A2945 Rru_A2946: Rru_A2946 - DNA mismatch repair protein (NCBI), at 3,394,939 to 3,396,828 _A2946 Position (kb) 3394 3395Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3393.515 kb on - strand, within Rru_A2944at 3393.537 kb on - strand, within Rru_A2944at 3393.537 kb on - strand, within Rru_A2944at 3393.693 kb on + strand, within Rru_A2944at 3393.693 kb on + strand, within Rru_A2944at 3393.694 kb on - strand, within Rru_A2944at 3393.749 kb on + strand, within Rru_A2944at 3393.750 kb on - strand, within Rru_A2944at 3393.795 kb on + strand, within Rru_A2944at 3394.361 kb on + strandat 3394.362 kb on - strandat 3394.404 kb on + strandat 3394.436 kb on + strand, within Rru_A2945at 3394.436 kb on + strand, within Rru_A2945at 3394.436 kb on + strand, within Rru_A2945at 3394.436 kb on + strand, within Rru_A2945at 3394.436 kb on + strand, within Rru_A2945at 3394.436 kb on + strand, within Rru_A2945at 3394.437 kb on - strand, within Rru_A2945at 3394.437 kb on - strand, within Rru_A2945at 3394.437 kb on - strand, within Rru_A2945at 3394.437 kb on - strand, within Rru_A2945at 3394.461 kb on - strand, within Rru_A2945at 3394.461 kb on - strand, within Rru_A2945at 3394.589 kb on + strand, within Rru_A2945at 3394.590 kb on - strand, within Rru_A2945at 3394.590 kb on - strand, within Rru_A2945at 3394.590 kb on - strand, within Rru_A2945at 3394.625 kb on - strand, within Rru_A2945at 3394.625 kb on - strand, within Rru_A2945at 3394.683 kb on - strand, within Rru_A2945at 3394.731 kb on + strand, within Rru_A2945at 3394.731 kb on + strand, within Rru_A2945at 3394.731 kb on + strand, within Rru_A2945at 3394.731 kb on + strand, within Rru_A2945at 3394.731 kb on + strand, within Rru_A2945at 3394.732 kb on - strand, within Rru_A2945at 3394.879 kb on + strandat 3394.978 kb on + strandat 3394.978 kb on + strandat 3394.988 kb on + strandat 3394.988 kb on + strandat 3394.988 kb on + strandat 3394.988 kb on + strandat 3394.988 kb on + strandat 3394.988 kb on + strandat 3394.988 kb on + strandat 3394.988 kb on + strandat 3394.989 kb on - strandat 3394.989 kb on - strandat 3394.989 kb on - strandat 3394.989 kb on - strandat 3395.037 kb on + strandat 3395.038 kb on - strandat 3395.478 kb on + strand, within Rru_A2946at 3395.478 kb on + strand, within Rru_A2946at 3395.478 kb on + strand, within Rru_A2946at 3395.478 kb on + strand, within Rru_A2946at 3395.479 kb on - strand, within Rru_A2946at 3395.479 kb on - strand, within Rru_A2946at 3395.479 kb on - strand, within Rru_A2946at 3395.479 kb on - strand, within Rru_A2946at 3395.479 kb on - strand, within Rru_A2946at 3395.480 kb on + strand, within Rru_A2946at 3395.480 kb on + strand, within Rru_A2946at 3395.480 kb on + strand, within Rru_A2946at 3395.480 kb on + strand, within Rru_A2946at 3395.480 kb on + strand, within Rru_A2946at 3395.480 kb on + strand, within Rru_A2946at 3395.480 kb on + strand, within Rru_A2946at 3395.480 kb on + strand, within Rru_A2946at 3395.481 kb on - strand, within Rru_A2946at 3395.481 kb on - strand, within Rru_A2946at 3395.481 kb on - strand, within Rru_A2946at 3395.481 kb on - strand, within Rru_A2946at 3395.685 kb on - strand, within Rru_A2946at 3395.733 kb on - strand, within Rru_A2946

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,393,515 - Rru_A2944 0.16 -0.3
3,393,537 - Rru_A2944 0.19 +0.1
3,393,537 - Rru_A2944 0.19 -1.7
3,393,693 + Rru_A2944 0.35 +0.1
3,393,693 + Rru_A2944 0.35 -1.5
3,393,694 - Rru_A2944 0.35 +0.1
3,393,749 + Rru_A2944 0.41 +0.8
3,393,750 - Rru_A2944 0.41 -0.7
3,393,795 + Rru_A2944 0.46 +0.1
3,394,361 + +0.1
3,394,362 - -1.7
3,394,404 + -1.1
3,394,436 + Rru_A2945 0.15 -2.7
3,394,436 + Rru_A2945 0.15 +0.1
3,394,436 + Rru_A2945 0.15 -1.3
3,394,436 + Rru_A2945 0.15 -2.0
3,394,436 + Rru_A2945 0.15 +0.1
3,394,436 + Rru_A2945 0.15 +0.1
3,394,437 - Rru_A2945 0.16 +0.1
3,394,437 - Rru_A2945 0.16 -0.9
3,394,437 - Rru_A2945 0.16 -0.9
3,394,437 - Rru_A2945 0.16 +0.1
3,394,461 - Rru_A2945 0.20 -1.5
3,394,461 - Rru_A2945 0.20 -3.5
3,394,589 + Rru_A2945 0.46 -1.9
3,394,590 - Rru_A2945 0.46 -3.5
3,394,590 - Rru_A2945 0.46 -1.9
3,394,590 - Rru_A2945 0.46 -1.7
3,394,625 - Rru_A2945 0.54 -1.7
3,394,625 - Rru_A2945 0.54 -1.9
3,394,683 - Rru_A2945 0.65 -1.2
3,394,731 + Rru_A2945 0.75 -1.9
3,394,731 + Rru_A2945 0.75 -1.9
3,394,731 + Rru_A2945 0.75 +1.7
3,394,731 + Rru_A2945 0.75 -0.9
3,394,731 + Rru_A2945 0.75 -2.9
3,394,732 - Rru_A2945 0.75 -1.9
3,394,879 + -0.7
3,394,978 + -1.5
3,394,978 + -2.7
3,394,988 + +0.1
3,394,988 + -1.5
3,394,988 + -1.8
3,394,988 + +0.1
3,394,988 + -0.9
3,394,988 + -1.6
3,394,988 + -1.5
3,394,988 + -0.3
3,394,989 - +0.1
3,394,989 - +0.1
3,394,989 - -1.9
3,394,989 - -1.1
3,395,037 + +0.1
3,395,038 - -1.5
3,395,478 + Rru_A2946 0.29 +0.1
3,395,478 + Rru_A2946 0.29 +0.1
3,395,478 + Rru_A2946 0.29 +2.1
3,395,478 + Rru_A2946 0.29 +0.7
3,395,479 - Rru_A2946 0.29 +0.1
3,395,479 - Rru_A2946 0.29 -1.2
3,395,479 - Rru_A2946 0.29 -2.1
3,395,479 - Rru_A2946 0.29 +0.1
3,395,479 - Rru_A2946 0.29 -1.5
3,395,480 + Rru_A2946 0.29 -0.9
3,395,480 + Rru_A2946 0.29 -0.9
3,395,480 + Rru_A2946 0.29 +1.9
3,395,480 + Rru_A2946 0.29 -1.7
3,395,480 + Rru_A2946 0.29 +0.1
3,395,480 + Rru_A2946 0.29 -1.1
3,395,480 + Rru_A2946 0.29 +0.1
3,395,480 + Rru_A2946 0.29 +0.1
3,395,481 - Rru_A2946 0.29 -1.7
3,395,481 - Rru_A2946 0.29 -2.9
3,395,481 - Rru_A2946 0.29 -0.9
3,395,481 - Rru_A2946 0.29 -3.0
3,395,685 - Rru_A2946 0.39 -2.2
3,395,733 - Rru_A2946 0.42 -0.9

Or see this region's nucleotide sequence