Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2944 and Rru_A2945 are separated by 42 nucleotides Rru_A2945 and Rru_A2946 are separated by 84 nucleotides
Rru_A2944: Rru_A2944 - ArgK protein (NCBI), at 3,393,358 to 3,394,317
_A2944
Rru_A2945: Rru_A2945 - hypothetical protein (NCBI), at 3,394,360 to 3,394,854
_A2945
Rru_A2946: Rru_A2946 - DNA mismatch repair protein (NCBI), at 3,394,939 to 3,396,828
_A2946
Position (kb)
3394
3395 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3393.515 kb on - strand, within Rru_A2944 at 3393.537 kb on - strand, within Rru_A2944 at 3393.537 kb on - strand, within Rru_A2944 at 3393.693 kb on + strand, within Rru_A2944 at 3393.693 kb on + strand, within Rru_A2944 at 3393.694 kb on - strand, within Rru_A2944 at 3393.749 kb on + strand, within Rru_A2944 at 3393.750 kb on - strand, within Rru_A2944 at 3393.795 kb on + strand, within Rru_A2944 at 3394.361 kb on + strand at 3394.362 kb on - strand at 3394.404 kb on + strand at 3394.436 kb on + strand, within Rru_A2945 at 3394.436 kb on + strand, within Rru_A2945 at 3394.436 kb on + strand, within Rru_A2945 at 3394.436 kb on + strand, within Rru_A2945 at 3394.436 kb on + strand, within Rru_A2945 at 3394.436 kb on + strand, within Rru_A2945 at 3394.437 kb on - strand, within Rru_A2945 at 3394.437 kb on - strand, within Rru_A2945 at 3394.437 kb on - strand, within Rru_A2945 at 3394.437 kb on - strand, within Rru_A2945 at 3394.461 kb on - strand, within Rru_A2945 at 3394.461 kb on - strand, within Rru_A2945 at 3394.589 kb on + strand, within Rru_A2945 at 3394.590 kb on - strand, within Rru_A2945 at 3394.590 kb on - strand, within Rru_A2945 at 3394.590 kb on - strand, within Rru_A2945 at 3394.625 kb on - strand, within Rru_A2945 at 3394.625 kb on - strand, within Rru_A2945 at 3394.683 kb on - strand, within Rru_A2945 at 3394.731 kb on + strand, within Rru_A2945 at 3394.731 kb on + strand, within Rru_A2945 at 3394.731 kb on + strand, within Rru_A2945 at 3394.731 kb on + strand, within Rru_A2945 at 3394.731 kb on + strand, within Rru_A2945 at 3394.732 kb on - strand, within Rru_A2945 at 3394.879 kb on + strand at 3394.978 kb on + strand at 3394.978 kb on + strand at 3394.988 kb on + strand at 3394.988 kb on + strand at 3394.988 kb on + strand at 3394.988 kb on + strand at 3394.988 kb on + strand at 3394.988 kb on + strand at 3394.988 kb on + strand at 3394.988 kb on + strand at 3394.989 kb on - strand at 3394.989 kb on - strand at 3394.989 kb on - strand at 3394.989 kb on - strand at 3395.037 kb on + strand at 3395.038 kb on - strand at 3395.478 kb on + strand, within Rru_A2946 at 3395.478 kb on + strand, within Rru_A2946 at 3395.478 kb on + strand, within Rru_A2946 at 3395.478 kb on + strand, within Rru_A2946 at 3395.479 kb on - strand, within Rru_A2946 at 3395.479 kb on - strand, within Rru_A2946 at 3395.479 kb on - strand, within Rru_A2946 at 3395.479 kb on - strand, within Rru_A2946 at 3395.479 kb on - strand, within Rru_A2946 at 3395.480 kb on + strand, within Rru_A2946 at 3395.480 kb on + strand, within Rru_A2946 at 3395.480 kb on + strand, within Rru_A2946 at 3395.480 kb on + strand, within Rru_A2946 at 3395.480 kb on + strand, within Rru_A2946 at 3395.480 kb on + strand, within Rru_A2946 at 3395.480 kb on + strand, within Rru_A2946 at 3395.480 kb on + strand, within Rru_A2946 at 3395.481 kb on - strand, within Rru_A2946 at 3395.481 kb on - strand, within Rru_A2946 at 3395.481 kb on - strand, within Rru_A2946 at 3395.481 kb on - strand, within Rru_A2946 at 3395.685 kb on - strand, within Rru_A2946 at 3395.733 kb on - strand, within Rru_A2946
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,393,515 - Rru_A2944 0.16 -0.3 3,393,537 - Rru_A2944 0.19 +0.1 3,393,537 - Rru_A2944 0.19 -1.7 3,393,693 + Rru_A2944 0.35 +0.1 3,393,693 + Rru_A2944 0.35 -1.5 3,393,694 - Rru_A2944 0.35 +0.1 3,393,749 + Rru_A2944 0.41 +0.8 3,393,750 - Rru_A2944 0.41 -0.7 3,393,795 + Rru_A2944 0.46 +0.1 3,394,361 + +0.1 3,394,362 - -1.7 3,394,404 + -1.1 3,394,436 + Rru_A2945 0.15 -2.7 3,394,436 + Rru_A2945 0.15 +0.1 3,394,436 + Rru_A2945 0.15 -1.3 3,394,436 + Rru_A2945 0.15 -2.0 3,394,436 + Rru_A2945 0.15 +0.1 3,394,436 + Rru_A2945 0.15 +0.1 3,394,437 - Rru_A2945 0.16 +0.1 3,394,437 - Rru_A2945 0.16 -0.9 3,394,437 - Rru_A2945 0.16 -0.9 3,394,437 - Rru_A2945 0.16 +0.1 3,394,461 - Rru_A2945 0.20 -1.5 3,394,461 - Rru_A2945 0.20 -3.5 3,394,589 + Rru_A2945 0.46 -1.9 3,394,590 - Rru_A2945 0.46 -3.5 3,394,590 - Rru_A2945 0.46 -1.9 3,394,590 - Rru_A2945 0.46 -1.7 3,394,625 - Rru_A2945 0.54 -1.7 3,394,625 - Rru_A2945 0.54 -1.9 3,394,683 - Rru_A2945 0.65 -1.2 3,394,731 + Rru_A2945 0.75 -1.9 3,394,731 + Rru_A2945 0.75 -1.9 3,394,731 + Rru_A2945 0.75 +1.7 3,394,731 + Rru_A2945 0.75 -0.9 3,394,731 + Rru_A2945 0.75 -2.9 3,394,732 - Rru_A2945 0.75 -1.9 3,394,879 + -0.7 3,394,978 + -1.5 3,394,978 + -2.7 3,394,988 + +0.1 3,394,988 + -1.5 3,394,988 + -1.8 3,394,988 + +0.1 3,394,988 + -0.9 3,394,988 + -1.6 3,394,988 + -1.5 3,394,988 + -0.3 3,394,989 - +0.1 3,394,989 - +0.1 3,394,989 - -1.9 3,394,989 - -1.1 3,395,037 + +0.1 3,395,038 - -1.5 3,395,478 + Rru_A2946 0.29 +0.1 3,395,478 + Rru_A2946 0.29 +0.1 3,395,478 + Rru_A2946 0.29 +2.1 3,395,478 + Rru_A2946 0.29 +0.7 3,395,479 - Rru_A2946 0.29 +0.1 3,395,479 - Rru_A2946 0.29 -1.2 3,395,479 - Rru_A2946 0.29 -2.1 3,395,479 - Rru_A2946 0.29 +0.1 3,395,479 - Rru_A2946 0.29 -1.5 3,395,480 + Rru_A2946 0.29 -0.9 3,395,480 + Rru_A2946 0.29 -0.9 3,395,480 + Rru_A2946 0.29 +1.9 3,395,480 + Rru_A2946 0.29 -1.7 3,395,480 + Rru_A2946 0.29 +0.1 3,395,480 + Rru_A2946 0.29 -1.1 3,395,480 + Rru_A2946 0.29 +0.1 3,395,480 + Rru_A2946 0.29 +0.1 3,395,481 - Rru_A2946 0.29 -1.7 3,395,481 - Rru_A2946 0.29 -2.9 3,395,481 - Rru_A2946 0.29 -0.9 3,395,481 - Rru_A2946 0.29 -3.0 3,395,685 - Rru_A2946 0.39 -2.2 3,395,733 - Rru_A2946 0.42 -0.9
Or see this region's nucleotide sequence