Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2888

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2886 and Rru_A2887 are separated by 85 nucleotidesRru_A2887 and Rru_A2888 are separated by 219 nucleotidesRru_A2888 and Rru_A2889 overlap by 1 nucleotidesRru_A2889 and Rru_A2890 are separated by 121 nucleotides Rru_A2886: Rru_A2886 - Carbamoyl-phosphate synthase, large subunit, glutamine-dependent (NCBI), at 3,328,748 to 3,331,996 _A2886 Rru_A2887: Rru_A2887 - GreA/GreB family elongation factor (NCBI), at 3,332,082 to 3,332,555 _A2887 Rru_A2888: Rru_A2888 - hypothetical protein (NCBI), at 3,332,775 to 3,333,467 _A2888 Rru_A2889: Rru_A2889 - hypothetical protein (NCBI), at 3,333,467 to 3,333,988 _A2889 Rru_A2890: Rru_A2890 - hypothetical protein (NCBI), at 3,334,110 to 3,334,556 _A2890 Position (kb) 3332 3333 3334Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3331.798 kb on + strandat 3331.892 kb on + strandat 3331.893 kb on - strandat 3331.984 kb on + strandat 3332.223 kb on + strand, within Rru_A2887at 3332.391 kb on + strand, within Rru_A2887at 3332.391 kb on + strand, within Rru_A2887at 3332.392 kb on - strand, within Rru_A2887at 3332.526 kb on + strandat 3332.636 kb on + strandat 3332.697 kb on + strandat 3332.697 kb on + strandat 3332.699 kb on + strandat 3332.699 kb on + strandat 3332.699 kb on + strandat 3332.699 kb on + strandat 3332.699 kb on + strandat 3332.700 kb on - strandat 3332.712 kb on + strandat 3332.712 kb on + strandat 3332.713 kb on - strandat 3332.713 kb on - strandat 3332.794 kb on - strandat 3332.873 kb on - strand, within Rru_A2888at 3332.909 kb on - strand, within Rru_A2888at 3332.985 kb on - strand, within Rru_A2888at 3332.985 kb on - strand, within Rru_A2888at 3333.156 kb on - strand, within Rru_A2888at 3333.425 kb on - strandat 3333.425 kb on - strandat 3333.433 kb on + strandat 3333.433 kb on + strandat 3333.433 kb on + strandat 3333.433 kb on + strandat 3333.434 kb on - strandat 3333.434 kb on - strandat 3333.434 kb on - strandat 3333.465 kb on + strandat 3333.466 kb on - strandat 3333.646 kb on - strand, within Rru_A2889at 3333.688 kb on + strand, within Rru_A2889at 3333.697 kb on + strand, within Rru_A2889at 3333.698 kb on - strand, within Rru_A2889at 3333.819 kb on + strand, within Rru_A2889at 3333.820 kb on - strand, within Rru_A2889at 3333.837 kb on + strand, within Rru_A2889at 3333.838 kb on - strand, within Rru_A2889at 3333.871 kb on + strand, within Rru_A2889at 3333.871 kb on + strand, within Rru_A2889at 3333.871 kb on + strand, within Rru_A2889at 3333.872 kb on - strand, within Rru_A2889at 3333.872 kb on - strand, within Rru_A2889at 3333.872 kb on - strand, within Rru_A2889at 3333.872 kb on - strand, within Rru_A2889at 3333.875 kb on + strand, within Rru_A2889at 3333.875 kb on + strand, within Rru_A2889at 3333.875 kb on + strand, within Rru_A2889at 3333.875 kb on + strand, within Rru_A2889at 3333.875 kb on + strand, within Rru_A2889at 3333.875 kb on + strand, within Rru_A2889at 3333.875 kb on + strand, within Rru_A2889at 3333.876 kb on - strand, within Rru_A2889at 3333.876 kb on - strand, within Rru_A2889at 3333.876 kb on - strand, within Rru_A2889at 3333.876 kb on - strand, within Rru_A2889at 3333.876 kb on - strand, within Rru_A2889at 3333.876 kb on - strand, within Rru_A2889at 3333.876 kb on - strand, within Rru_A2889at 3333.878 kb on - strand, within Rru_A2889at 3333.934 kb on + strand, within Rru_A2889at 3333.935 kb on - strand, within Rru_A2889at 3334.076 kb on + strandat 3334.076 kb on + strandat 3334.076 kb on + strandat 3334.124 kb on + strandat 3334.383 kb on + strand, within Rru_A2890at 3334.383 kb on + strand, within Rru_A2890at 3334.384 kb on - strand, within Rru_A2890at 3334.384 kb on - strand, within Rru_A2890at 3334.384 kb on - strand, within Rru_A2890

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,331,798 + -0.3
3,331,892 + -1.7
3,331,893 - -2.1
3,331,984 + +0.4
3,332,223 + Rru_A2887 0.30 +0.1
3,332,391 + Rru_A2887 0.65 +0.1
3,332,391 + Rru_A2887 0.65 -1.2
3,332,392 - Rru_A2887 0.65 -0.9
3,332,526 + +0.1
3,332,636 + +0.1
3,332,697 + -1.3
3,332,697 + +0.1
3,332,699 + +0.1
3,332,699 + +0.1
3,332,699 + -1.9
3,332,699 + -2.7
3,332,699 + -2.9
3,332,700 - -2.3
3,332,712 + -2.5
3,332,712 + +0.1
3,332,713 - -1.4
3,332,713 - -0.4
3,332,794 - -2.2
3,332,873 - Rru_A2888 0.14 +0.1
3,332,909 - Rru_A2888 0.19 -1.9
3,332,985 - Rru_A2888 0.30 -2.0
3,332,985 - Rru_A2888 0.30 +0.1
3,333,156 - Rru_A2888 0.55 -1.5
3,333,425 - -1.6
3,333,425 - +0.1
3,333,433 + +0.1
3,333,433 + -2.7
3,333,433 + +0.1
3,333,433 + -2.1
3,333,434 - +0.1
3,333,434 - +0.1
3,333,434 - -1.3
3,333,465 + -0.3
3,333,466 - -1.5
3,333,646 - Rru_A2889 0.34 -3.1
3,333,688 + Rru_A2889 0.42 -3.1
3,333,697 + Rru_A2889 0.44 -0.9
3,333,698 - Rru_A2889 0.44 +0.4
3,333,819 + Rru_A2889 0.67 -2.2
3,333,820 - Rru_A2889 0.68 +0.1
3,333,837 + Rru_A2889 0.71 -0.9
3,333,838 - Rru_A2889 0.71 +0.1
3,333,871 + Rru_A2889 0.77 +0.1
3,333,871 + Rru_A2889 0.77 -1.1
3,333,871 + Rru_A2889 0.77 -1.9
3,333,872 - Rru_A2889 0.78 -0.3
3,333,872 - Rru_A2889 0.78 -0.5
3,333,872 - Rru_A2889 0.78 -0.9
3,333,872 - Rru_A2889 0.78 +0.1
3,333,875 + Rru_A2889 0.78 -1.5
3,333,875 + Rru_A2889 0.78 +0.1
3,333,875 + Rru_A2889 0.78 -1.1
3,333,875 + Rru_A2889 0.78 +1.8
3,333,875 + Rru_A2889 0.78 -1.5
3,333,875 + Rru_A2889 0.78 +0.1
3,333,875 + Rru_A2889 0.78 +0.1
3,333,876 - Rru_A2889 0.78 -1.9
3,333,876 - Rru_A2889 0.78 -2.5
3,333,876 - Rru_A2889 0.78 -2.3
3,333,876 - Rru_A2889 0.78 -1.9
3,333,876 - Rru_A2889 0.78 +1.1
3,333,876 - Rru_A2889 0.78 -2.2
3,333,876 - Rru_A2889 0.78 -1.7
3,333,878 - Rru_A2889 0.79 +0.1
3,333,934 + Rru_A2889 0.89 +0.1
3,333,935 - Rru_A2889 0.90 -1.6
3,334,076 + -2.0
3,334,076 + +0.1
3,334,076 + -0.9
3,334,124 + -0.2
3,334,383 + Rru_A2890 0.61 +0.1
3,334,383 + Rru_A2890 0.61 -1.7
3,334,384 - Rru_A2890 0.61 +0.1
3,334,384 - Rru_A2890 0.61 -2.1
3,334,384 - Rru_A2890 0.61 -0.7

Or see this region's nucleotide sequence