Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2812 and Rru_A2813 are separated by 44 nucleotides Rru_A2813 and Rru_A2814 are separated by 108 nucleotides Rru_A2814 and Rru_A2815 are separated by 4 nucleotides Rru_A2815 and Rru_A2816 are separated by 136 nucleotides Rru_A2816 and Rru_A2817 are separated by 151 nucleotides
Rru_A2812: Rru_A2812 - molybdopterin-guanine dinucleotide biosynthesis protein A (NCBI), at 3,245,711 to 3,246,382
_A2812
Rru_A2813: Rru_A2813 - Molybdopterin cofactor biosynthesis MoaC region (NCBI), at 3,246,427 to 3,246,927
_A2813
Rru_A2814: Rru_A2814 - Molybdopterin converting factor, subunit 1 (NCBI), at 3,247,036 to 3,247,287
_A2814
Rru_A2815: Rru_A2815 - Molybdopterin biosynthesis MoaE (NCBI), at 3,247,292 to 3,247,780
_A2815
Rru_A2816: Rru_A2816 - Transcriptional Regulator, TetR family (NCBI), at 3,247,917 to 3,248,495
_A2816
Rru_A2817: Rru_A2817 - Phasin (NCBI), at 3,248,647 to 3,248,997
_A2817
Position (kb) 3247
3248 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 3246.304 kb on + strand, within Rru_A2812 at 3246.304 kb on + strand, within Rru_A2812 at 3246.305 kb on - strand, within Rru_A2812 at 3246.829 kb on + strand, within Rru_A2813 at 3246.829 kb on + strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.830 kb on - strand, within Rru_A2813 at 3246.852 kb on + strand, within Rru_A2813 at 3247.048 kb on + strand at 3247.048 kb on + strand at 3247.049 kb on - strand at 3247.049 kb on - strand at 3247.049 kb on - strand at 3247.094 kb on + strand, within Rru_A2814 at 3247.094 kb on + strand, within Rru_A2814 at 3247.095 kb on - strand, within Rru_A2814 at 3247.095 kb on - strand, within Rru_A2814 at 3247.460 kb on + strand, within Rru_A2815 at 3248.034 kb on + strand, within Rru_A2816 at 3248.409 kb on - strand, within Rru_A2816 at 3248.493 kb on + strand at 3248.518 kb on + strand at 3248.668 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,246,304 + Rru_A2812 0.88 -3.0 3,246,304 + Rru_A2812 0.88 -1.4 3,246,305 - Rru_A2812 0.88 -0.7 3,246,829 + Rru_A2813 0.80 +0.0 3,246,829 + Rru_A2813 0.80 +0.0 3,246,830 - Rru_A2813 0.80 +0.0 3,246,830 - Rru_A2813 0.80 +0.0 3,246,830 - Rru_A2813 0.80 +0.0 3,246,830 - Rru_A2813 0.80 -0.4 3,246,830 - Rru_A2813 0.80 -1.3 3,246,852 + Rru_A2813 0.85 +3.3 3,247,048 + -2.6 3,247,048 + +0.0 3,247,049 - -1.0 3,247,049 - -2.8 3,247,049 - +0.0 3,247,094 + Rru_A2814 0.23 -1.5 3,247,094 + Rru_A2814 0.23 -1.3 3,247,095 - Rru_A2814 0.23 -0.6 3,247,095 - Rru_A2814 0.23 +0.0 3,247,460 + Rru_A2815 0.34 -2.3 3,248,034 + Rru_A2816 0.20 -2.8 3,248,409 - Rru_A2816 0.85 +0.0 3,248,493 + +0.0 3,248,518 + +0.0 3,248,668 - +0.0
Or see this region's nucleotide sequence