Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2706

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_AR0051 and Rru_A2704 are separated by 127 nucleotidesRru_A2704 and Rru_A2705 are separated by 274 nucleotidesRru_A2705 and Rru_A2706 are separated by 42 nucleotidesRru_A2706 and Rru_A2707 overlap by 4 nucleotidesRru_A2707 and Rru_A2708 are separated by 6 nucleotides Rru_AR0051: Rru_AR0051 - tRNA-Thr (NCBI), at 3,128,216 to 3,128,291 _AR0051 Rru_A2704: Rru_A2704 - hypothetical protein (NCBI), at 3,128,419 to 3,128,652 _A2704 Rru_A2705: Rru_A2705 - hypothetical protein (NCBI), at 3,128,927 to 3,129,172 _A2705 Rru_A2706: Rru_A2706 - Ankyrin (NCBI), at 3,129,215 to 3,130,003 _A2706 Rru_A2707: Rru_A2707 - Alpha/beta hydrolase fold (NCBI), at 3,130,000 to 3,130,794 _A2707 Rru_A2708: Rru_A2708 - hypothetical protein (NCBI), at 3,130,801 to 3,131,172 _A2708 Position (kb) 3129 3130 3131Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3128.294 kb on + strandat 3128.295 kb on - strandat 3128.334 kb on + strandat 3128.335 kb on - strandat 3128.335 kb on - strandat 3128.335 kb on - strandat 3128.396 kb on + strandat 3128.418 kb on + strandat 3128.418 kb on + strandat 3128.418 kb on + strandat 3128.418 kb on + strandat 3128.418 kb on + strandat 3128.466 kb on + strand, within Rru_A2704at 3128.466 kb on + strand, within Rru_A2704at 3128.466 kb on + strand, within Rru_A2704at 3128.466 kb on + strand, within Rru_A2704at 3128.466 kb on + strand, within Rru_A2704at 3128.466 kb on + strand, within Rru_A2704at 3128.467 kb on - strand, within Rru_A2704at 3128.467 kb on - strand, within Rru_A2704at 3128.512 kb on - strand, within Rru_A2704at 3128.527 kb on + strand, within Rru_A2704at 3128.527 kb on + strand, within Rru_A2704at 3128.528 kb on - strand, within Rru_A2704at 3128.528 kb on - strand, within Rru_A2704at 3128.528 kb on - strand, within Rru_A2704at 3128.528 kb on - strand, within Rru_A2704at 3128.552 kb on + strand, within Rru_A2704at 3128.552 kb on + strand, within Rru_A2704at 3128.552 kb on + strand, within Rru_A2704at 3128.552 kb on + strand, within Rru_A2704at 3128.553 kb on - strand, within Rru_A2704at 3128.585 kb on + strand, within Rru_A2704at 3128.585 kb on + strand, within Rru_A2704at 3128.585 kb on + strand, within Rru_A2704at 3128.586 kb on - strand, within Rru_A2704at 3128.586 kb on - strand, within Rru_A2704at 3128.765 kb on + strandat 3128.765 kb on + strandat 3128.766 kb on - strandat 3128.799 kb on - strandat 3128.870 kb on + strandat 3128.870 kb on + strandat 3128.957 kb on + strand, within Rru_A2705at 3128.957 kb on + strand, within Rru_A2705at 3129.095 kb on - strand, within Rru_A2705at 3129.558 kb on - strand, within Rru_A2706at 3129.558 kb on - strand, within Rru_A2706at 3129.558 kb on - strand, within Rru_A2706at 3130.001 kb on + strandat 3130.001 kb on + strandat 3130.002 kb on - strandat 3130.154 kb on + strand, within Rru_A2707at 3130.155 kb on - strand, within Rru_A2707at 3130.305 kb on + strand, within Rru_A2707at 3130.306 kb on - strand, within Rru_A2707at 3130.533 kb on + strand, within Rru_A2707at 3130.533 kb on + strand, within Rru_A2707at 3130.533 kb on + strand, within Rru_A2707at 3130.534 kb on - strand, within Rru_A2707at 3130.534 kb on - strand, within Rru_A2707at 3130.534 kb on - strand, within Rru_A2707at 3130.583 kb on + strand, within Rru_A2707at 3130.583 kb on + strand, within Rru_A2707at 3130.583 kb on + strand, within Rru_A2707at 3130.584 kb on - strand, within Rru_A2707at 3130.835 kb on + strandat 3130.835 kb on + strandat 3130.836 kb on - strandat 3130.875 kb on + strand, within Rru_A2708

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,128,294 + -0.9
3,128,295 - +0.1
3,128,334 + +0.1
3,128,335 - +0.1
3,128,335 - -0.8
3,128,335 - +2.1
3,128,396 + +0.1
3,128,418 + -2.4
3,128,418 + +0.1
3,128,418 + +0.1
3,128,418 + +0.5
3,128,418 + -1.7
3,128,466 + Rru_A2704 0.20 +0.1
3,128,466 + Rru_A2704 0.20 -0.9
3,128,466 + Rru_A2704 0.20 +0.1
3,128,466 + Rru_A2704 0.20 +0.1
3,128,466 + Rru_A2704 0.20 -1.5
3,128,466 + Rru_A2704 0.20 -3.4
3,128,467 - Rru_A2704 0.21 -0.9
3,128,467 - Rru_A2704 0.21 +1.6
3,128,512 - Rru_A2704 0.40 -0.5
3,128,527 + Rru_A2704 0.46 -0.5
3,128,527 + Rru_A2704 0.46 +0.3
3,128,528 - Rru_A2704 0.47 -0.9
3,128,528 - Rru_A2704 0.47 +0.1
3,128,528 - Rru_A2704 0.47 +0.1
3,128,528 - Rru_A2704 0.47 +0.1
3,128,552 + Rru_A2704 0.57 -1.7
3,128,552 + Rru_A2704 0.57 -0.5
3,128,552 + Rru_A2704 0.57 +1.6
3,128,552 + Rru_A2704 0.57 +0.4
3,128,553 - Rru_A2704 0.57 +0.1
3,128,585 + Rru_A2704 0.71 +0.1
3,128,585 + Rru_A2704 0.71 -0.9
3,128,585 + Rru_A2704 0.71 -1.2
3,128,586 - Rru_A2704 0.71 -1.5
3,128,586 - Rru_A2704 0.71 +0.1
3,128,765 + -1.8
3,128,765 + -2.3
3,128,766 - -1.9
3,128,799 - +0.1
3,128,870 + -1.8
3,128,870 + +0.4
3,128,957 + Rru_A2705 0.12 -1.5
3,128,957 + Rru_A2705 0.12 +0.1
3,129,095 - Rru_A2705 0.68 +0.1
3,129,558 - Rru_A2706 0.43 -2.7
3,129,558 - Rru_A2706 0.43 -3.5
3,129,558 - Rru_A2706 0.43 -1.5
3,130,001 + -1.1
3,130,001 + -1.7
3,130,002 - +0.9
3,130,154 + Rru_A2707 0.19 -1.5
3,130,155 - Rru_A2707 0.19 -0.5
3,130,305 + Rru_A2707 0.38 -2.3
3,130,306 - Rru_A2707 0.38 +0.1
3,130,533 + Rru_A2707 0.67 +0.1
3,130,533 + Rru_A2707 0.67 +0.1
3,130,533 + Rru_A2707 0.67 -0.9
3,130,534 - Rru_A2707 0.67 -1.9
3,130,534 - Rru_A2707 0.67 +0.5
3,130,534 - Rru_A2707 0.67 +0.1
3,130,583 + Rru_A2707 0.73 +0.1
3,130,583 + Rru_A2707 0.73 +0.1
3,130,583 + Rru_A2707 0.73 +0.5
3,130,584 - Rru_A2707 0.73 +0.1
3,130,835 + +0.1
3,130,835 + -1.7
3,130,836 - -2.5
3,130,875 + Rru_A2708 0.20 +0.1

Or see this region's nucleotide sequence