Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_AR0051 and Rru_A2704 are separated by 127 nucleotides Rru_A2704 and Rru_A2705 are separated by 274 nucleotides Rru_A2705 and Rru_A2706 are separated by 42 nucleotides Rru_A2706 and Rru_A2707 overlap by 4 nucleotides Rru_A2707 and Rru_A2708 are separated by 6 nucleotides
Rru_AR0051: Rru_AR0051 - tRNA-Thr (NCBI), at 3,128,216 to 3,128,291
_AR0051
Rru_A2704: Rru_A2704 - hypothetical protein (NCBI), at 3,128,419 to 3,128,652
_A2704
Rru_A2705: Rru_A2705 - hypothetical protein (NCBI), at 3,128,927 to 3,129,172
_A2705
Rru_A2706: Rru_A2706 - Ankyrin (NCBI), at 3,129,215 to 3,130,003
_A2706
Rru_A2707: Rru_A2707 - Alpha/beta hydrolase fold (NCBI), at 3,130,000 to 3,130,794
_A2707
Rru_A2708: Rru_A2708 - hypothetical protein (NCBI), at 3,130,801 to 3,131,172
_A2708
Position (kb)
3129
3130
3131 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3128.294 kb on + strand at 3128.295 kb on - strand at 3128.334 kb on + strand at 3128.335 kb on - strand at 3128.335 kb on - strand at 3128.335 kb on - strand at 3128.396 kb on + strand at 3128.418 kb on + strand at 3128.418 kb on + strand at 3128.418 kb on + strand at 3128.418 kb on + strand at 3128.418 kb on + strand at 3128.466 kb on + strand, within Rru_A2704 at 3128.466 kb on + strand, within Rru_A2704 at 3128.466 kb on + strand, within Rru_A2704 at 3128.466 kb on + strand, within Rru_A2704 at 3128.466 kb on + strand, within Rru_A2704 at 3128.466 kb on + strand, within Rru_A2704 at 3128.467 kb on - strand, within Rru_A2704 at 3128.467 kb on - strand, within Rru_A2704 at 3128.512 kb on - strand, within Rru_A2704 at 3128.527 kb on + strand, within Rru_A2704 at 3128.527 kb on + strand, within Rru_A2704 at 3128.528 kb on - strand, within Rru_A2704 at 3128.528 kb on - strand, within Rru_A2704 at 3128.528 kb on - strand, within Rru_A2704 at 3128.528 kb on - strand, within Rru_A2704 at 3128.552 kb on + strand, within Rru_A2704 at 3128.552 kb on + strand, within Rru_A2704 at 3128.552 kb on + strand, within Rru_A2704 at 3128.552 kb on + strand, within Rru_A2704 at 3128.553 kb on - strand, within Rru_A2704 at 3128.585 kb on + strand, within Rru_A2704 at 3128.585 kb on + strand, within Rru_A2704 at 3128.585 kb on + strand, within Rru_A2704 at 3128.586 kb on - strand, within Rru_A2704 at 3128.586 kb on - strand, within Rru_A2704 at 3128.765 kb on + strand at 3128.765 kb on + strand at 3128.766 kb on - strand at 3128.799 kb on - strand at 3128.870 kb on + strand at 3128.870 kb on + strand at 3128.957 kb on + strand, within Rru_A2705 at 3128.957 kb on + strand, within Rru_A2705 at 3129.095 kb on - strand, within Rru_A2705 at 3129.558 kb on - strand, within Rru_A2706 at 3129.558 kb on - strand, within Rru_A2706 at 3129.558 kb on - strand, within Rru_A2706 at 3130.001 kb on + strand at 3130.001 kb on + strand at 3130.002 kb on - strand at 3130.154 kb on + strand, within Rru_A2707 at 3130.155 kb on - strand, within Rru_A2707 at 3130.305 kb on + strand, within Rru_A2707 at 3130.306 kb on - strand, within Rru_A2707 at 3130.533 kb on + strand, within Rru_A2707 at 3130.533 kb on + strand, within Rru_A2707 at 3130.533 kb on + strand, within Rru_A2707 at 3130.534 kb on - strand, within Rru_A2707 at 3130.534 kb on - strand, within Rru_A2707 at 3130.534 kb on - strand, within Rru_A2707 at 3130.583 kb on + strand, within Rru_A2707 at 3130.583 kb on + strand, within Rru_A2707 at 3130.583 kb on + strand, within Rru_A2707 at 3130.584 kb on - strand, within Rru_A2707 at 3130.835 kb on + strand at 3130.835 kb on + strand at 3130.836 kb on - strand at 3130.875 kb on + strand, within Rru_A2708
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,128,294 + -0.9 3,128,295 - +0.1 3,128,334 + +0.1 3,128,335 - +0.1 3,128,335 - -0.8 3,128,335 - +2.1 3,128,396 + +0.1 3,128,418 + -2.4 3,128,418 + +0.1 3,128,418 + +0.1 3,128,418 + +0.5 3,128,418 + -1.7 3,128,466 + Rru_A2704 0.20 +0.1 3,128,466 + Rru_A2704 0.20 -0.9 3,128,466 + Rru_A2704 0.20 +0.1 3,128,466 + Rru_A2704 0.20 +0.1 3,128,466 + Rru_A2704 0.20 -1.5 3,128,466 + Rru_A2704 0.20 -3.4 3,128,467 - Rru_A2704 0.21 -0.9 3,128,467 - Rru_A2704 0.21 +1.6 3,128,512 - Rru_A2704 0.40 -0.5 3,128,527 + Rru_A2704 0.46 -0.5 3,128,527 + Rru_A2704 0.46 +0.3 3,128,528 - Rru_A2704 0.47 -0.9 3,128,528 - Rru_A2704 0.47 +0.1 3,128,528 - Rru_A2704 0.47 +0.1 3,128,528 - Rru_A2704 0.47 +0.1 3,128,552 + Rru_A2704 0.57 -1.7 3,128,552 + Rru_A2704 0.57 -0.5 3,128,552 + Rru_A2704 0.57 +1.6 3,128,552 + Rru_A2704 0.57 +0.4 3,128,553 - Rru_A2704 0.57 +0.1 3,128,585 + Rru_A2704 0.71 +0.1 3,128,585 + Rru_A2704 0.71 -0.9 3,128,585 + Rru_A2704 0.71 -1.2 3,128,586 - Rru_A2704 0.71 -1.5 3,128,586 - Rru_A2704 0.71 +0.1 3,128,765 + -1.8 3,128,765 + -2.3 3,128,766 - -1.9 3,128,799 - +0.1 3,128,870 + -1.8 3,128,870 + +0.4 3,128,957 + Rru_A2705 0.12 -1.5 3,128,957 + Rru_A2705 0.12 +0.1 3,129,095 - Rru_A2705 0.68 +0.1 3,129,558 - Rru_A2706 0.43 -2.7 3,129,558 - Rru_A2706 0.43 -3.5 3,129,558 - Rru_A2706 0.43 -1.5 3,130,001 + -1.1 3,130,001 + -1.7 3,130,002 - +0.9 3,130,154 + Rru_A2707 0.19 -1.5 3,130,155 - Rru_A2707 0.19 -0.5 3,130,305 + Rru_A2707 0.38 -2.3 3,130,306 - Rru_A2707 0.38 +0.1 3,130,533 + Rru_A2707 0.67 +0.1 3,130,533 + Rru_A2707 0.67 +0.1 3,130,533 + Rru_A2707 0.67 -0.9 3,130,534 - Rru_A2707 0.67 -1.9 3,130,534 - Rru_A2707 0.67 +0.5 3,130,534 - Rru_A2707 0.67 +0.1 3,130,583 + Rru_A2707 0.73 +0.1 3,130,583 + Rru_A2707 0.73 +0.1 3,130,583 + Rru_A2707 0.73 +0.5 3,130,584 - Rru_A2707 0.73 +0.1 3,130,835 + +0.1 3,130,835 + -1.7 3,130,836 - -2.5 3,130,875 + Rru_A2708 0.20 +0.1
Or see this region's nucleotide sequence