Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2662

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2661 and Rru_A2662 are separated by 98 nucleotidesRru_A2662 and Rru_A2663 are separated by 142 nucleotidesRru_A2663 and Rru_A2664 are separated by 167 nucleotides Rru_A2661: Rru_A2661 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 3,090,356 to 3,092,290 _A2661 Rru_A2662: Rru_A2662 - Peptidase S1C, Do (NCBI), at 3,092,389 to 3,093,864 _A2662 Rru_A2663: Rru_A2663 - Ribosomal protein L17 (NCBI), at 3,094,007 to 3,094,429 _A2663 Rru_A2664: Rru_A2664 - DNA-directed RNA polymerase, alpha subunit (NCBI), at 3,094,597 to 3,095,619 _A2664 Position (kb) 3092 3093 3094Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3091.578 kb on + strand, within Rru_A2661at 3091.579 kb on - strand, within Rru_A2661at 3091.579 kb on - strand, within Rru_A2661at 3091.614 kb on + strand, within Rru_A2661at 3091.615 kb on - strand, within Rru_A2661at 3091.615 kb on - strand, within Rru_A2661at 3091.648 kb on + strand, within Rru_A2661at 3091.648 kb on + strand, within Rru_A2661at 3091.649 kb on - strand, within Rru_A2661at 3091.649 kb on - strand, within Rru_A2661at 3091.737 kb on + strand, within Rru_A2661at 3091.737 kb on + strand, within Rru_A2661at 3091.935 kb on + strand, within Rru_A2661at 3091.935 kb on + strand, within Rru_A2661at 3091.935 kb on + strand, within Rru_A2661at 3091.935 kb on + strand, within Rru_A2661at 3091.935 kb on + strand, within Rru_A2661at 3091.936 kb on - strand, within Rru_A2661at 3091.936 kb on - strand, within Rru_A2661at 3091.936 kb on - strand, within Rru_A2661at 3091.986 kb on + strand, within Rru_A2661at 3092.028 kb on + strand, within Rru_A2661at 3092.029 kb on - strand, within Rru_A2661at 3092.029 kb on - strand, within Rru_A2661at 3092.029 kb on - strand, within Rru_A2661at 3092.299 kb on + strandat 3092.299 kb on + strandat 3092.300 kb on - strandat 3092.300 kb on - strandat 3092.300 kb on - strandat 3092.634 kb on + strand, within Rru_A2662at 3092.685 kb on + strand, within Rru_A2662at 3092.685 kb on + strand, within Rru_A2662at 3092.736 kb on + strand, within Rru_A2662at 3092.736 kb on + strand, within Rru_A2662at 3092.736 kb on + strand, within Rru_A2662at 3092.736 kb on + strand, within Rru_A2662at 3092.737 kb on - strand, within Rru_A2662at 3092.737 kb on - strand, within Rru_A2662at 3092.737 kb on - strand, within Rru_A2662at 3092.737 kb on - strand, within Rru_A2662at 3093.092 kb on + strand, within Rru_A2662at 3093.639 kb on + strand, within Rru_A2662at 3093.639 kb on + strand, within Rru_A2662at 3093.640 kb on - strand, within Rru_A2662at 3093.640 kb on - strand, within Rru_A2662at 3093.640 kb on - strand, within Rru_A2662at 3094.008 kb on + strandat 3094.602 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,091,578 + Rru_A2661 0.63 -1.9
3,091,579 - Rru_A2661 0.63 -1.1
3,091,579 - Rru_A2661 0.63 +0.1
3,091,614 + Rru_A2661 0.65 -2.7
3,091,615 - Rru_A2661 0.65 +0.1
3,091,615 - Rru_A2661 0.65 +0.6
3,091,648 + Rru_A2661 0.67 +1.7
3,091,648 + Rru_A2661 0.67 -2.3
3,091,649 - Rru_A2661 0.67 -1.8
3,091,649 - Rru_A2661 0.67 +0.6
3,091,737 + Rru_A2661 0.71 -0.9
3,091,737 + Rru_A2661 0.71 -1.4
3,091,935 + Rru_A2661 0.82 -1.8
3,091,935 + Rru_A2661 0.82 +0.1
3,091,935 + Rru_A2661 0.82 -0.9
3,091,935 + Rru_A2661 0.82 -1.7
3,091,935 + Rru_A2661 0.82 +0.1
3,091,936 - Rru_A2661 0.82 -2.7
3,091,936 - Rru_A2661 0.82 -0.8
3,091,936 - Rru_A2661 0.82 +0.1
3,091,986 + Rru_A2661 0.84 -0.7
3,092,028 + Rru_A2661 0.86 -3.3
3,092,029 - Rru_A2661 0.86 -0.7
3,092,029 - Rru_A2661 0.86 +0.7
3,092,029 - Rru_A2661 0.86 +0.1
3,092,299 + -2.3
3,092,299 + +0.1
3,092,300 - +0.6
3,092,300 - +0.1
3,092,300 - +0.1
3,092,634 + Rru_A2662 0.17 +2.4
3,092,685 + Rru_A2662 0.20 +0.1
3,092,685 + Rru_A2662 0.20 -2.7
3,092,736 + Rru_A2662 0.24 -3.4
3,092,736 + Rru_A2662 0.24 +0.1
3,092,736 + Rru_A2662 0.24 -1.7
3,092,736 + Rru_A2662 0.24 -1.5
3,092,737 - Rru_A2662 0.24 +0.1
3,092,737 - Rru_A2662 0.24 -0.9
3,092,737 - Rru_A2662 0.24 +0.1
3,092,737 - Rru_A2662 0.24 -1.7
3,093,092 + Rru_A2662 0.48 -1.2
3,093,639 + Rru_A2662 0.85 -3.4
3,093,639 + Rru_A2662 0.85 -2.8
3,093,640 - Rru_A2662 0.85 +0.1
3,093,640 - Rru_A2662 0.85 -2.5
3,093,640 - Rru_A2662 0.85 -2.0
3,094,008 + +0.1
3,094,602 - +1.1

Or see this region's nucleotide sequence