Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2661 and Rru_A2662 are separated by 98 nucleotides Rru_A2662 and Rru_A2663 are separated by 142 nucleotides Rru_A2663 and Rru_A2664 are separated by 167 nucleotides
Rru_A2661: Rru_A2661 - Putative diguanylate cyclase (GGDEF domain) (NCBI), at 3,090,356 to 3,092,290
_A2661
Rru_A2662: Rru_A2662 - Peptidase S1C, Do (NCBI), at 3,092,389 to 3,093,864
_A2662
Rru_A2663: Rru_A2663 - Ribosomal protein L17 (NCBI), at 3,094,007 to 3,094,429
_A2663
Rru_A2664: Rru_A2664 - DNA-directed RNA polymerase, alpha subunit (NCBI), at 3,094,597 to 3,095,619
_A2664
Position (kb)
3092
3093
3094 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3091.578 kb on + strand, within Rru_A2661 at 3091.579 kb on - strand, within Rru_A2661 at 3091.579 kb on - strand, within Rru_A2661 at 3091.614 kb on + strand, within Rru_A2661 at 3091.615 kb on - strand, within Rru_A2661 at 3091.615 kb on - strand, within Rru_A2661 at 3091.648 kb on + strand, within Rru_A2661 at 3091.648 kb on + strand, within Rru_A2661 at 3091.649 kb on - strand, within Rru_A2661 at 3091.649 kb on - strand, within Rru_A2661 at 3091.737 kb on + strand, within Rru_A2661 at 3091.737 kb on + strand, within Rru_A2661 at 3091.935 kb on + strand, within Rru_A2661 at 3091.935 kb on + strand, within Rru_A2661 at 3091.935 kb on + strand, within Rru_A2661 at 3091.935 kb on + strand, within Rru_A2661 at 3091.935 kb on + strand, within Rru_A2661 at 3091.936 kb on - strand, within Rru_A2661 at 3091.936 kb on - strand, within Rru_A2661 at 3091.936 kb on - strand, within Rru_A2661 at 3091.986 kb on + strand, within Rru_A2661 at 3092.028 kb on + strand, within Rru_A2661 at 3092.029 kb on - strand, within Rru_A2661 at 3092.029 kb on - strand, within Rru_A2661 at 3092.029 kb on - strand, within Rru_A2661 at 3092.299 kb on + strand at 3092.299 kb on + strand at 3092.300 kb on - strand at 3092.300 kb on - strand at 3092.300 kb on - strand at 3092.634 kb on + strand, within Rru_A2662 at 3092.685 kb on + strand, within Rru_A2662 at 3092.685 kb on + strand, within Rru_A2662 at 3092.736 kb on + strand, within Rru_A2662 at 3092.736 kb on + strand, within Rru_A2662 at 3092.736 kb on + strand, within Rru_A2662 at 3092.736 kb on + strand, within Rru_A2662 at 3092.737 kb on - strand, within Rru_A2662 at 3092.737 kb on - strand, within Rru_A2662 at 3092.737 kb on - strand, within Rru_A2662 at 3092.737 kb on - strand, within Rru_A2662 at 3093.092 kb on + strand, within Rru_A2662 at 3093.639 kb on + strand, within Rru_A2662 at 3093.639 kb on + strand, within Rru_A2662 at 3093.640 kb on - strand, within Rru_A2662 at 3093.640 kb on - strand, within Rru_A2662 at 3093.640 kb on - strand, within Rru_A2662 at 3094.008 kb on + strand at 3094.602 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,091,578 + Rru_A2661 0.63 -1.9 3,091,579 - Rru_A2661 0.63 -1.1 3,091,579 - Rru_A2661 0.63 +0.1 3,091,614 + Rru_A2661 0.65 -2.7 3,091,615 - Rru_A2661 0.65 +0.1 3,091,615 - Rru_A2661 0.65 +0.6 3,091,648 + Rru_A2661 0.67 +1.7 3,091,648 + Rru_A2661 0.67 -2.3 3,091,649 - Rru_A2661 0.67 -1.8 3,091,649 - Rru_A2661 0.67 +0.6 3,091,737 + Rru_A2661 0.71 -0.9 3,091,737 + Rru_A2661 0.71 -1.4 3,091,935 + Rru_A2661 0.82 -1.8 3,091,935 + Rru_A2661 0.82 +0.1 3,091,935 + Rru_A2661 0.82 -0.9 3,091,935 + Rru_A2661 0.82 -1.7 3,091,935 + Rru_A2661 0.82 +0.1 3,091,936 - Rru_A2661 0.82 -2.7 3,091,936 - Rru_A2661 0.82 -0.8 3,091,936 - Rru_A2661 0.82 +0.1 3,091,986 + Rru_A2661 0.84 -0.7 3,092,028 + Rru_A2661 0.86 -3.3 3,092,029 - Rru_A2661 0.86 -0.7 3,092,029 - Rru_A2661 0.86 +0.7 3,092,029 - Rru_A2661 0.86 +0.1 3,092,299 + -2.3 3,092,299 + +0.1 3,092,300 - +0.6 3,092,300 - +0.1 3,092,300 - +0.1 3,092,634 + Rru_A2662 0.17 +2.4 3,092,685 + Rru_A2662 0.20 +0.1 3,092,685 + Rru_A2662 0.20 -2.7 3,092,736 + Rru_A2662 0.24 -3.4 3,092,736 + Rru_A2662 0.24 +0.1 3,092,736 + Rru_A2662 0.24 -1.7 3,092,736 + Rru_A2662 0.24 -1.5 3,092,737 - Rru_A2662 0.24 +0.1 3,092,737 - Rru_A2662 0.24 -0.9 3,092,737 - Rru_A2662 0.24 +0.1 3,092,737 - Rru_A2662 0.24 -1.7 3,093,092 + Rru_A2662 0.48 -1.2 3,093,639 + Rru_A2662 0.85 -3.4 3,093,639 + Rru_A2662 0.85 -2.8 3,093,640 - Rru_A2662 0.85 +0.1 3,093,640 - Rru_A2662 0.85 -2.5 3,093,640 - Rru_A2662 0.85 -2.0 3,094,008 + +0.1 3,094,602 - +1.1
Or see this region's nucleotide sequence