Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2640 and Rru_A2641 are separated by 119 nucleotides Rru_A2641 and Rru_A2642 are separated by 327 nucleotides
Rru_A2640: Rru_A2640 - hypothetical protein (NCBI), at 3,069,599 to 3,070,711
_A2640
Rru_A2641: Rru_A2641 - hypothetical protein (NCBI), at 3,070,831 to 3,071,400
_A2641
Rru_A2642: Rru_A2642 - Alpha/beta hydrolase fold (NCBI), at 3,071,728 to 3,072,645
_A2642
Position (kb)
3070
3071
3072 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3069.890 kb on + strand, within Rru_A2640 at 3069.991 kb on - strand, within Rru_A2640 at 3070.053 kb on + strand, within Rru_A2640 at 3070.321 kb on + strand, within Rru_A2640 at 3070.322 kb on - strand, within Rru_A2640 at 3070.322 kb on - strand, within Rru_A2640 at 3070.380 kb on + strand, within Rru_A2640 at 3070.381 kb on - strand, within Rru_A2640 at 3070.415 kb on - strand, within Rru_A2640 at 3070.415 kb on - strand, within Rru_A2640 at 3070.415 kb on - strand, within Rru_A2640 at 3070.415 kb on - strand, within Rru_A2640 at 3070.415 kb on - strand, within Rru_A2640 at 3070.503 kb on + strand, within Rru_A2640 at 3070.523 kb on - strand, within Rru_A2640 at 3070.524 kb on + strand, within Rru_A2640 at 3070.524 kb on + strand, within Rru_A2640 at 3070.524 kb on + strand, within Rru_A2640 at 3070.524 kb on + strand, within Rru_A2640 at 3070.524 kb on + strand, within Rru_A2640 at 3070.524 kb on + strand, within Rru_A2640 at 3070.525 kb on - strand, within Rru_A2640 at 3070.525 kb on - strand, within Rru_A2640 at 3070.525 kb on - strand, within Rru_A2640 at 3070.525 kb on - strand, within Rru_A2640 at 3070.525 kb on - strand, within Rru_A2640 at 3070.525 kb on - strand, within Rru_A2640 at 3070.528 kb on + strand, within Rru_A2640 at 3070.528 kb on + strand, within Rru_A2640 at 3070.529 kb on - strand, within Rru_A2640 at 3070.529 kb on - strand, within Rru_A2640 at 3070.529 kb on - strand, within Rru_A2640 at 3070.529 kb on - strand, within Rru_A2640 at 3070.529 kb on - strand, within Rru_A2640 at 3070.622 kb on + strand at 3070.623 kb on - strand at 3070.623 kb on - strand at 3070.623 kb on - strand at 3070.623 kb on - strand at 3070.706 kb on + strand at 3070.707 kb on - strand at 3070.758 kb on + strand at 3070.758 kb on + strand at 3070.853 kb on + strand at 3070.978 kb on + strand, within Rru_A2641 at 3070.979 kb on - strand, within Rru_A2641 at 3070.979 kb on - strand, within Rru_A2641 at 3070.992 kb on + strand, within Rru_A2641 at 3070.993 kb on - strand, within Rru_A2641 at 3070.995 kb on - strand, within Rru_A2641 at 3071.146 kb on + strand, within Rru_A2641 at 3071.176 kb on - strand, within Rru_A2641 at 3071.176 kb on - strand, within Rru_A2641 at 3071.178 kb on - strand, within Rru_A2641 at 3071.232 kb on + strand, within Rru_A2641 at 3071.350 kb on - strand at 3071.350 kb on - strand at 3071.350 kb on - strand at 3071.551 kb on + strand at 3071.551 kb on + strand at 3071.611 kb on + strand at 3071.612 kb on - strand at 3071.612 kb on - strand at 3071.612 kb on - strand at 3071.612 kb on - strand at 3071.622 kb on + strand at 3071.639 kb on - strand at 3071.834 kb on + strand, within Rru_A2642 at 3071.834 kb on + strand, within Rru_A2642 at 3071.966 kb on + strand, within Rru_A2642 at 3071.966 kb on + strand, within Rru_A2642 at 3071.967 kb on - strand, within Rru_A2642 at 3071.967 kb on - strand, within Rru_A2642 at 3071.987 kb on + strand, within Rru_A2642 at 3071.987 kb on + strand, within Rru_A2642 at 3071.988 kb on - strand, within Rru_A2642 at 3071.988 kb on - strand, within Rru_A2642 at 3072.173 kb on + strand, within Rru_A2642 at 3072.173 kb on + strand, within Rru_A2642 at 3072.176 kb on + strand, within Rru_A2642 at 3072.176 kb on + strand, within Rru_A2642 at 3072.176 kb on + strand, within Rru_A2642 at 3072.177 kb on - strand, within Rru_A2642 at 3072.177 kb on - strand, within Rru_A2642 at 3072.177 kb on - strand, within Rru_A2642 at 3072.177 kb on - strand, within Rru_A2642 at 3072.177 kb on - strand, within Rru_A2642 at 3072.177 kb on - strand, within Rru_A2642 at 3072.177 kb on - strand, within Rru_A2642 at 3072.195 kb on - strand, within Rru_A2642 at 3072.234 kb on + strand, within Rru_A2642 at 3072.246 kb on + strand, within Rru_A2642 at 3072.246 kb on + strand, within Rru_A2642 at 3072.246 kb on + strand, within Rru_A2642 at 3072.247 kb on - strand, within Rru_A2642 at 3072.248 kb on + strand, within Rru_A2642
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 3,069,890 + Rru_A2640 0.26 +0.0 3,069,991 - Rru_A2640 0.35 +0.1 3,070,053 + Rru_A2640 0.41 -2.2 3,070,321 + Rru_A2640 0.65 -0.5 3,070,322 - Rru_A2640 0.65 +0.1 3,070,322 - Rru_A2640 0.65 -1.8 3,070,380 + Rru_A2640 0.70 -0.9 3,070,381 - Rru_A2640 0.70 -1.8 3,070,415 - Rru_A2640 0.73 -1.4 3,070,415 - Rru_A2640 0.73 -2.3 3,070,415 - Rru_A2640 0.73 -0.9 3,070,415 - Rru_A2640 0.73 -2.5 3,070,415 - Rru_A2640 0.73 +0.1 3,070,503 + Rru_A2640 0.81 -2.6 3,070,523 - Rru_A2640 0.83 -1.5 3,070,524 + Rru_A2640 0.83 -2.9 3,070,524 + Rru_A2640 0.83 -0.3 3,070,524 + Rru_A2640 0.83 -1.5 3,070,524 + Rru_A2640 0.83 -1.9 3,070,524 + Rru_A2640 0.83 -0.9 3,070,524 + Rru_A2640 0.83 -0.7 3,070,525 - Rru_A2640 0.83 +0.1 3,070,525 - Rru_A2640 0.83 +0.1 3,070,525 - Rru_A2640 0.83 +0.1 3,070,525 - Rru_A2640 0.83 -1.2 3,070,525 - Rru_A2640 0.83 -3.3 3,070,525 - Rru_A2640 0.83 -0.5 3,070,528 + Rru_A2640 0.83 -0.4 3,070,528 + Rru_A2640 0.83 -2.1 3,070,529 - Rru_A2640 0.84 -1.8 3,070,529 - Rru_A2640 0.84 -3.1 3,070,529 - Rru_A2640 0.84 +0.1 3,070,529 - Rru_A2640 0.84 -0.6 3,070,529 - Rru_A2640 0.84 +0.1 3,070,622 + +0.1 3,070,623 - +0.1 3,070,623 - +0.1 3,070,623 - -1.5 3,070,623 - -1.1 3,070,706 + -3.1 3,070,707 - -1.5 3,070,758 + -1.7 3,070,758 + +0.1 3,070,853 + -1.3 3,070,978 + Rru_A2641 0.26 -1.4 3,070,979 - Rru_A2641 0.26 +0.1 3,070,979 - Rru_A2641 0.26 -2.9 3,070,992 + Rru_A2641 0.28 -2.1 3,070,993 - Rru_A2641 0.28 +0.1 3,070,995 - Rru_A2641 0.29 +0.1 3,071,146 + Rru_A2641 0.55 -1.9 3,071,176 - Rru_A2641 0.61 -1.8 3,071,176 - Rru_A2641 0.61 -2.8 3,071,178 - Rru_A2641 0.61 -2.3 3,071,232 + Rru_A2641 0.70 -1.3 3,071,350 - +0.1 3,071,350 - -0.7 3,071,350 - -1.2 3,071,551 + -2.1 3,071,551 + +0.1 3,071,611 + -1.8 3,071,612 - -0.6 3,071,612 - -2.5 3,071,612 - +0.1 3,071,612 - +0.1 3,071,622 + +0.3 3,071,639 - +0.1 3,071,834 + Rru_A2642 0.12 +0.1 3,071,834 + Rru_A2642 0.12 -0.9 3,071,966 + Rru_A2642 0.26 -2.7 3,071,966 + Rru_A2642 0.26 +0.6 3,071,967 - Rru_A2642 0.26 +0.1 3,071,967 - Rru_A2642 0.26 -3.0 3,071,987 + Rru_A2642 0.28 -1.6 3,071,987 + Rru_A2642 0.28 +0.1 3,071,988 - Rru_A2642 0.28 +0.3 3,071,988 - Rru_A2642 0.28 -0.5 3,072,173 + Rru_A2642 0.48 +0.1 3,072,173 + Rru_A2642 0.48 -1.4 3,072,176 + Rru_A2642 0.49 +0.1 3,072,176 + Rru_A2642 0.49 -0.9 3,072,176 + Rru_A2642 0.49 -0.7 3,072,177 - Rru_A2642 0.49 -0.4 3,072,177 - Rru_A2642 0.49 -3.0 3,072,177 - Rru_A2642 0.49 -1.6 3,072,177 - Rru_A2642 0.49 +0.1 3,072,177 - Rru_A2642 0.49 +0.1 3,072,177 - Rru_A2642 0.49 +1.6 3,072,177 - Rru_A2642 0.49 -0.7 3,072,195 - Rru_A2642 0.51 -1.2 3,072,234 + Rru_A2642 0.55 -1.5 3,072,246 + Rru_A2642 0.56 -1.7 3,072,246 + Rru_A2642 0.56 +0.1 3,072,246 + Rru_A2642 0.56 +0.3 3,072,247 - Rru_A2642 0.57 +1.1 3,072,248 + Rru_A2642 0.57 -1.3
Or see this region's nucleotide sequence