Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2641

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2640 and Rru_A2641 are separated by 119 nucleotidesRru_A2641 and Rru_A2642 are separated by 327 nucleotides Rru_A2640: Rru_A2640 - hypothetical protein (NCBI), at 3,069,599 to 3,070,711 _A2640 Rru_A2641: Rru_A2641 - hypothetical protein (NCBI), at 3,070,831 to 3,071,400 _A2641 Rru_A2642: Rru_A2642 - Alpha/beta hydrolase fold (NCBI), at 3,071,728 to 3,072,645 _A2642 Position (kb) 3070 3071 3072Strain fitness (log2 ratio) -3 -2 -1 0 1at 3069.890 kb on + strand, within Rru_A2640at 3069.991 kb on - strand, within Rru_A2640at 3070.053 kb on + strand, within Rru_A2640at 3070.321 kb on + strand, within Rru_A2640at 3070.322 kb on - strand, within Rru_A2640at 3070.322 kb on - strand, within Rru_A2640at 3070.380 kb on + strand, within Rru_A2640at 3070.381 kb on - strand, within Rru_A2640at 3070.415 kb on - strand, within Rru_A2640at 3070.415 kb on - strand, within Rru_A2640at 3070.415 kb on - strand, within Rru_A2640at 3070.415 kb on - strand, within Rru_A2640at 3070.415 kb on - strand, within Rru_A2640at 3070.503 kb on + strand, within Rru_A2640at 3070.523 kb on - strand, within Rru_A2640at 3070.524 kb on + strand, within Rru_A2640at 3070.524 kb on + strand, within Rru_A2640at 3070.524 kb on + strand, within Rru_A2640at 3070.524 kb on + strand, within Rru_A2640at 3070.524 kb on + strand, within Rru_A2640at 3070.524 kb on + strand, within Rru_A2640at 3070.525 kb on - strand, within Rru_A2640at 3070.525 kb on - strand, within Rru_A2640at 3070.525 kb on - strand, within Rru_A2640at 3070.525 kb on - strand, within Rru_A2640at 3070.525 kb on - strand, within Rru_A2640at 3070.525 kb on - strand, within Rru_A2640at 3070.528 kb on + strand, within Rru_A2640at 3070.528 kb on + strand, within Rru_A2640at 3070.529 kb on - strand, within Rru_A2640at 3070.529 kb on - strand, within Rru_A2640at 3070.529 kb on - strand, within Rru_A2640at 3070.529 kb on - strand, within Rru_A2640at 3070.529 kb on - strand, within Rru_A2640at 3070.622 kb on + strandat 3070.623 kb on - strandat 3070.623 kb on - strandat 3070.623 kb on - strandat 3070.623 kb on - strandat 3070.706 kb on + strandat 3070.707 kb on - strandat 3070.758 kb on + strandat 3070.758 kb on + strandat 3070.853 kb on + strandat 3070.978 kb on + strand, within Rru_A2641at 3070.979 kb on - strand, within Rru_A2641at 3070.979 kb on - strand, within Rru_A2641at 3070.992 kb on + strand, within Rru_A2641at 3070.993 kb on - strand, within Rru_A2641at 3070.995 kb on - strand, within Rru_A2641at 3071.146 kb on + strand, within Rru_A2641at 3071.176 kb on - strand, within Rru_A2641at 3071.176 kb on - strand, within Rru_A2641at 3071.178 kb on - strand, within Rru_A2641at 3071.232 kb on + strand, within Rru_A2641at 3071.350 kb on - strandat 3071.350 kb on - strandat 3071.350 kb on - strandat 3071.551 kb on + strandat 3071.551 kb on + strandat 3071.611 kb on + strandat 3071.612 kb on - strandat 3071.612 kb on - strandat 3071.612 kb on - strandat 3071.612 kb on - strandat 3071.622 kb on + strandat 3071.639 kb on - strandat 3071.834 kb on + strand, within Rru_A2642at 3071.834 kb on + strand, within Rru_A2642at 3071.966 kb on + strand, within Rru_A2642at 3071.966 kb on + strand, within Rru_A2642at 3071.967 kb on - strand, within Rru_A2642at 3071.967 kb on - strand, within Rru_A2642at 3071.987 kb on + strand, within Rru_A2642at 3071.987 kb on + strand, within Rru_A2642at 3071.988 kb on - strand, within Rru_A2642at 3071.988 kb on - strand, within Rru_A2642at 3072.173 kb on + strand, within Rru_A2642at 3072.173 kb on + strand, within Rru_A2642at 3072.176 kb on + strand, within Rru_A2642at 3072.176 kb on + strand, within Rru_A2642at 3072.176 kb on + strand, within Rru_A2642at 3072.177 kb on - strand, within Rru_A2642at 3072.177 kb on - strand, within Rru_A2642at 3072.177 kb on - strand, within Rru_A2642at 3072.177 kb on - strand, within Rru_A2642at 3072.177 kb on - strand, within Rru_A2642at 3072.177 kb on - strand, within Rru_A2642at 3072.177 kb on - strand, within Rru_A2642at 3072.195 kb on - strand, within Rru_A2642at 3072.234 kb on + strand, within Rru_A2642at 3072.246 kb on + strand, within Rru_A2642at 3072.246 kb on + strand, within Rru_A2642at 3072.246 kb on + strand, within Rru_A2642at 3072.247 kb on - strand, within Rru_A2642at 3072.248 kb on + strand, within Rru_A2642

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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3,069,890 + Rru_A2640 0.26 +0.0
3,069,991 - Rru_A2640 0.35 +0.1
3,070,053 + Rru_A2640 0.41 -2.2
3,070,321 + Rru_A2640 0.65 -0.5
3,070,322 - Rru_A2640 0.65 +0.1
3,070,322 - Rru_A2640 0.65 -1.8
3,070,380 + Rru_A2640 0.70 -0.9
3,070,381 - Rru_A2640 0.70 -1.8
3,070,415 - Rru_A2640 0.73 -1.4
3,070,415 - Rru_A2640 0.73 -2.3
3,070,415 - Rru_A2640 0.73 -0.9
3,070,415 - Rru_A2640 0.73 -2.5
3,070,415 - Rru_A2640 0.73 +0.1
3,070,503 + Rru_A2640 0.81 -2.6
3,070,523 - Rru_A2640 0.83 -1.5
3,070,524 + Rru_A2640 0.83 -2.9
3,070,524 + Rru_A2640 0.83 -0.3
3,070,524 + Rru_A2640 0.83 -1.5
3,070,524 + Rru_A2640 0.83 -1.9
3,070,524 + Rru_A2640 0.83 -0.9
3,070,524 + Rru_A2640 0.83 -0.7
3,070,525 - Rru_A2640 0.83 +0.1
3,070,525 - Rru_A2640 0.83 +0.1
3,070,525 - Rru_A2640 0.83 +0.1
3,070,525 - Rru_A2640 0.83 -1.2
3,070,525 - Rru_A2640 0.83 -3.3
3,070,525 - Rru_A2640 0.83 -0.5
3,070,528 + Rru_A2640 0.83 -0.4
3,070,528 + Rru_A2640 0.83 -2.1
3,070,529 - Rru_A2640 0.84 -1.8
3,070,529 - Rru_A2640 0.84 -3.1
3,070,529 - Rru_A2640 0.84 +0.1
3,070,529 - Rru_A2640 0.84 -0.6
3,070,529 - Rru_A2640 0.84 +0.1
3,070,622 + +0.1
3,070,623 - +0.1
3,070,623 - +0.1
3,070,623 - -1.5
3,070,623 - -1.1
3,070,706 + -3.1
3,070,707 - -1.5
3,070,758 + -1.7
3,070,758 + +0.1
3,070,853 + -1.3
3,070,978 + Rru_A2641 0.26 -1.4
3,070,979 - Rru_A2641 0.26 +0.1
3,070,979 - Rru_A2641 0.26 -2.9
3,070,992 + Rru_A2641 0.28 -2.1
3,070,993 - Rru_A2641 0.28 +0.1
3,070,995 - Rru_A2641 0.29 +0.1
3,071,146 + Rru_A2641 0.55 -1.9
3,071,176 - Rru_A2641 0.61 -1.8
3,071,176 - Rru_A2641 0.61 -2.8
3,071,178 - Rru_A2641 0.61 -2.3
3,071,232 + Rru_A2641 0.70 -1.3
3,071,350 - +0.1
3,071,350 - -0.7
3,071,350 - -1.2
3,071,551 + -2.1
3,071,551 + +0.1
3,071,611 + -1.8
3,071,612 - -0.6
3,071,612 - -2.5
3,071,612 - +0.1
3,071,612 - +0.1
3,071,622 + +0.3
3,071,639 - +0.1
3,071,834 + Rru_A2642 0.12 +0.1
3,071,834 + Rru_A2642 0.12 -0.9
3,071,966 + Rru_A2642 0.26 -2.7
3,071,966 + Rru_A2642 0.26 +0.6
3,071,967 - Rru_A2642 0.26 +0.1
3,071,967 - Rru_A2642 0.26 -3.0
3,071,987 + Rru_A2642 0.28 -1.6
3,071,987 + Rru_A2642 0.28 +0.1
3,071,988 - Rru_A2642 0.28 +0.3
3,071,988 - Rru_A2642 0.28 -0.5
3,072,173 + Rru_A2642 0.48 +0.1
3,072,173 + Rru_A2642 0.48 -1.4
3,072,176 + Rru_A2642 0.49 +0.1
3,072,176 + Rru_A2642 0.49 -0.9
3,072,176 + Rru_A2642 0.49 -0.7
3,072,177 - Rru_A2642 0.49 -0.4
3,072,177 - Rru_A2642 0.49 -3.0
3,072,177 - Rru_A2642 0.49 -1.6
3,072,177 - Rru_A2642 0.49 +0.1
3,072,177 - Rru_A2642 0.49 +0.1
3,072,177 - Rru_A2642 0.49 +1.6
3,072,177 - Rru_A2642 0.49 -0.7
3,072,195 - Rru_A2642 0.51 -1.2
3,072,234 + Rru_A2642 0.55 -1.5
3,072,246 + Rru_A2642 0.56 -1.7
3,072,246 + Rru_A2642 0.56 +0.1
3,072,246 + Rru_A2642 0.56 +0.3
3,072,247 - Rru_A2642 0.57 +1.1
3,072,248 + Rru_A2642 0.57 -1.3

Or see this region's nucleotide sequence