Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2472

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2470 and Rru_A2471 are separated by 67 nucleotidesRru_A2471 and Rru_A2472 are separated by 69 nucleotidesRru_A2472 and Rru_A2473 are separated by 233 nucleotides Rru_A2470: Rru_A2470 - Ferrous iron transport protein B (NCBI), at 2,867,984 to 2,870,344 _A2470 Rru_A2471: Rru_A2471 - hypothetical protein (NCBI), at 2,870,412 to 2,870,693 _A2471 Rru_A2472: Rru_A2472 - hypothetical protein (NCBI), at 2,870,763 to 2,871,395 _A2472 Rru_A2473: Rru_A2473 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 2,871,629 to 2,873,281 _A2473 Position (kb) 2870 2871 2872Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2870.054 kb on + strand, within Rru_A2470at 2870.054 kb on + strand, within Rru_A2470at 2870.055 kb on - strand, within Rru_A2470at 2870.075 kb on + strand, within Rru_A2470at 2870.075 kb on + strand, within Rru_A2470at 2870.075 kb on + strand, within Rru_A2470at 2870.075 kb on + strand, within Rru_A2470at 2870.075 kb on + strand, within Rru_A2470at 2870.075 kb on + strand, within Rru_A2470at 2870.075 kb on + strand, within Rru_A2470at 2870.075 kb on + strand, within Rru_A2470at 2870.075 kb on + strand, within Rru_A2470at 2870.076 kb on - strand, within Rru_A2470at 2870.076 kb on - strand, within Rru_A2470at 2870.076 kb on - strand, within Rru_A2470at 2870.076 kb on - strand, within Rru_A2470at 2870.076 kb on - strand, within Rru_A2470at 2870.076 kb on - strand, within Rru_A2470at 2870.076 kb on - strand, within Rru_A2470at 2870.076 kb on - strand, within Rru_A2470at 2870.077 kb on + strand, within Rru_A2470at 2870.077 kb on + strand, within Rru_A2470at 2870.077 kb on + strand, within Rru_A2470at 2870.078 kb on - strand, within Rru_A2470at 2870.078 kb on - strand, within Rru_A2470at 2870.078 kb on - strand, within Rru_A2470at 2870.168 kb on + strandat 2870.189 kb on + strandat 2870.189 kb on + strandat 2870.189 kb on + strandat 2870.189 kb on + strandat 2870.190 kb on - strandat 2870.190 kb on - strandat 2870.236 kb on + strandat 2870.436 kb on + strandat 2870.437 kb on - strandat 2870.437 kb on - strandat 2870.437 kb on - strandat 2870.703 kb on + strandat 2870.753 kb on - strandat 2870.765 kb on - strandat 2870.779 kb on + strandat 2870.779 kb on + strandat 2870.779 kb on + strandat 2870.780 kb on - strandat 2870.965 kb on + strand, within Rru_A2472at 2870.966 kb on - strand, within Rru_A2472at 2871.037 kb on + strand, within Rru_A2472at 2871.043 kb on + strand, within Rru_A2472at 2871.044 kb on - strand, within Rru_A2472at 2871.044 kb on - strand, within Rru_A2472at 2871.044 kb on - strand, within Rru_A2472at 2871.101 kb on - strand, within Rru_A2472at 2871.101 kb on - strand, within Rru_A2472at 2871.101 kb on - strand, within Rru_A2472at 2871.103 kb on + strand, within Rru_A2472at 2871.158 kb on + strand, within Rru_A2472at 2871.159 kb on - strand, within Rru_A2472at 2871.159 kb on - strand, within Rru_A2472at 2871.176 kb on + strand, within Rru_A2472at 2871.177 kb on - strand, within Rru_A2472at 2871.177 kb on - strand, within Rru_A2472at 2871.178 kb on + strand, within Rru_A2472at 2871.178 kb on + strand, within Rru_A2472at 2871.179 kb on - strand, within Rru_A2472at 2871.179 kb on - strand, within Rru_A2472at 2871.558 kb on + strandat 2871.558 kb on + strandat 2871.558 kb on + strandat 2871.562 kb on + strandat 2871.562 kb on + strandat 2871.562 kb on + strandat 2871.563 kb on - strandat 2871.587 kb on + strandat 2871.588 kb on - strandat 2871.588 kb on - strandat 2871.588 kb on - strandat 2871.603 kb on + strandat 2871.763 kb on + strandat 2871.763 kb on + strandat 2871.763 kb on + strandat 2871.764 kb on - strandat 2871.764 kb on - strandat 2871.764 kb on - strandat 2871.764 kb on - strandat 2871.764 kb on - strandat 2871.999 kb on - strand, within Rru_A2473at 2872.064 kb on + strand, within Rru_A2473at 2872.065 kb on - strand, within Rru_A2473at 2872.068 kb on + strand, within Rru_A2473at 2872.068 kb on + strand, within Rru_A2473at 2872.068 kb on + strand, within Rru_A2473at 2872.068 kb on + strand, within Rru_A2473at 2872.068 kb on + strand, within Rru_A2473at 2872.068 kb on + strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.069 kb on - strand, within Rru_A2473at 2872.244 kb on + strand, within Rru_A2473at 2872.244 kb on + strand, within Rru_A2473at 2872.245 kb on - strand, within Rru_A2473at 2872.245 kb on - strand, within Rru_A2473at 2872.245 kb on - strand, within Rru_A2473at 2872.245 kb on - strand, within Rru_A2473at 2872.245 kb on - strand, within Rru_A2473at 2872.246 kb on + strand, within Rru_A2473at 2872.246 kb on + strand, within Rru_A2473at 2872.247 kb on - strand, within Rru_A2473at 2872.247 kb on - strand, within Rru_A2473at 2872.247 kb on - strand, within Rru_A2473at 2872.247 kb on - strand, within Rru_A2473at 2872.247 kb on - strand, within Rru_A2473at 2872.280 kb on - strand, within Rru_A2473at 2872.280 kb on - strand, within Rru_A2473

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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2,870,054 + Rru_A2470 0.88 -2.1
2,870,054 + Rru_A2470 0.88 -0.9
2,870,055 - Rru_A2470 0.88 -2.9
2,870,075 + Rru_A2470 0.89 +0.1
2,870,075 + Rru_A2470 0.89 +0.8
2,870,075 + Rru_A2470 0.89 -0.9
2,870,075 + Rru_A2470 0.89 +0.1
2,870,075 + Rru_A2470 0.89 +0.1
2,870,075 + Rru_A2470 0.89 -2.9
2,870,075 + Rru_A2470 0.89 -1.9
2,870,075 + Rru_A2470 0.89 +1.1
2,870,075 + Rru_A2470 0.89 -0.2
2,870,076 - Rru_A2470 0.89 +1.4
2,870,076 - Rru_A2470 0.89 +0.1
2,870,076 - Rru_A2470 0.89 -1.3
2,870,076 - Rru_A2470 0.89 -0.7
2,870,076 - Rru_A2470 0.89 -0.9
2,870,076 - Rru_A2470 0.89 +0.1
2,870,076 - Rru_A2470 0.89 -1.6
2,870,076 - Rru_A2470 0.89 -2.5
2,870,077 + Rru_A2470 0.89 -1.7
2,870,077 + Rru_A2470 0.89 -0.4
2,870,077 + Rru_A2470 0.89 +0.4
2,870,078 - Rru_A2470 0.89 +0.1
2,870,078 - Rru_A2470 0.89 -1.5
2,870,078 - Rru_A2470 0.89 -1.5
2,870,168 + +1.6
2,870,189 + -1.1
2,870,189 + +0.1
2,870,189 + +1.1
2,870,189 + -1.2
2,870,190 - -2.0
2,870,190 - +0.1
2,870,236 + -0.6
2,870,436 + -0.9
2,870,437 - -2.1
2,870,437 - -2.0
2,870,437 - -1.7
2,870,703 + +0.1
2,870,753 - -0.9
2,870,765 - +0.8
2,870,779 + -3.2
2,870,779 + +0.1
2,870,779 + -1.7
2,870,780 - +0.1
2,870,965 + Rru_A2472 0.32 +0.1
2,870,966 - Rru_A2472 0.32 -1.3
2,871,037 + Rru_A2472 0.43 +0.1
2,871,043 + Rru_A2472 0.44 -2.0
2,871,044 - Rru_A2472 0.44 -0.9
2,871,044 - Rru_A2472 0.44 -2.8
2,871,044 - Rru_A2472 0.44 +0.1
2,871,101 - Rru_A2472 0.53 -2.9
2,871,101 - Rru_A2472 0.53 -1.6
2,871,101 - Rru_A2472 0.53 +0.1
2,871,103 + Rru_A2472 0.54 +0.1
2,871,158 + Rru_A2472 0.62 -2.7
2,871,159 - Rru_A2472 0.63 +0.1
2,871,159 - Rru_A2472 0.63 -1.6
2,871,176 + Rru_A2472 0.65 -0.5
2,871,177 - Rru_A2472 0.65 -0.7
2,871,177 - Rru_A2472 0.65 -2.9
2,871,178 + Rru_A2472 0.66 +0.1
2,871,178 + Rru_A2472 0.66 +0.1
2,871,179 - Rru_A2472 0.66 -3.8
2,871,179 - Rru_A2472 0.66 -2.3
2,871,558 + +0.1
2,871,558 + -3.3
2,871,558 + -1.8
2,871,562 + +0.1
2,871,562 + -1.9
2,871,562 + +0.1
2,871,563 - -2.1
2,871,587 + -1.7
2,871,588 - -2.6
2,871,588 - -0.5
2,871,588 - +0.1
2,871,603 + -1.0
2,871,763 + -0.6
2,871,763 + -1.9
2,871,763 + +2.0
2,871,764 - -1.2
2,871,764 - -2.7
2,871,764 - -2.7
2,871,764 - -1.9
2,871,764 - +0.1
2,871,999 - Rru_A2473 0.22 -1.5
2,872,064 + Rru_A2473 0.26 -1.0
2,872,065 - Rru_A2473 0.26 -0.2
2,872,068 + Rru_A2473 0.27 +0.8
2,872,068 + Rru_A2473 0.27 -0.0
2,872,068 + Rru_A2473 0.27 +0.1
2,872,068 + Rru_A2473 0.27 +2.1
2,872,068 + Rru_A2473 0.27 +0.1
2,872,068 + Rru_A2473 0.27 -1.8
2,872,069 - Rru_A2473 0.27 +0.1
2,872,069 - Rru_A2473 0.27 +0.1
2,872,069 - Rru_A2473 0.27 -1.9
2,872,069 - Rru_A2473 0.27 -1.9
2,872,069 - Rru_A2473 0.27 -0.8
2,872,069 - Rru_A2473 0.27 -0.4
2,872,069 - Rru_A2473 0.27 -1.7
2,872,069 - Rru_A2473 0.27 +0.1
2,872,069 - Rru_A2473 0.27 +0.1
2,872,069 - Rru_A2473 0.27 +0.1
2,872,069 - Rru_A2473 0.27 +0.1
2,872,244 + Rru_A2473 0.37 -2.2
2,872,244 + Rru_A2473 0.37 +0.1
2,872,245 - Rru_A2473 0.37 -2.8
2,872,245 - Rru_A2473 0.37 -1.7
2,872,245 - Rru_A2473 0.37 +0.1
2,872,245 - Rru_A2473 0.37 +0.4
2,872,245 - Rru_A2473 0.37 +0.1
2,872,246 + Rru_A2473 0.37 -1.1
2,872,246 + Rru_A2473 0.37 +0.1
2,872,247 - Rru_A2473 0.37 -0.9
2,872,247 - Rru_A2473 0.37 -1.5
2,872,247 - Rru_A2473 0.37 +0.1
2,872,247 - Rru_A2473 0.37 -1.7
2,872,247 - Rru_A2473 0.37 +0.1
2,872,280 - Rru_A2473 0.39 -3.6
2,872,280 - Rru_A2473 0.39 -0.7

Or see this region's nucleotide sequence