Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2470 and Rru_A2471 are separated by 67 nucleotides Rru_A2471 and Rru_A2472 are separated by 69 nucleotides Rru_A2472 and Rru_A2473 are separated by 233 nucleotides
Rru_A2470: Rru_A2470 - Ferrous iron transport protein B (NCBI), at 2,867,984 to 2,870,344
_A2470
Rru_A2471: Rru_A2471 - hypothetical protein (NCBI), at 2,870,412 to 2,870,693
_A2471
Rru_A2472: Rru_A2472 - hypothetical protein (NCBI), at 2,870,763 to 2,871,395
_A2472
Rru_A2473: Rru_A2473 - PAS/PAC Sensor Signal Transduction Histidine Kinase (NCBI), at 2,871,629 to 2,873,281
_A2473
Position (kb)
2870
2871
2872 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 2870.054 kb on + strand, within Rru_A2470 at 2870.054 kb on + strand, within Rru_A2470 at 2870.055 kb on - strand, within Rru_A2470 at 2870.075 kb on + strand, within Rru_A2470 at 2870.075 kb on + strand, within Rru_A2470 at 2870.075 kb on + strand, within Rru_A2470 at 2870.075 kb on + strand, within Rru_A2470 at 2870.075 kb on + strand, within Rru_A2470 at 2870.075 kb on + strand, within Rru_A2470 at 2870.075 kb on + strand, within Rru_A2470 at 2870.075 kb on + strand, within Rru_A2470 at 2870.075 kb on + strand, within Rru_A2470 at 2870.076 kb on - strand, within Rru_A2470 at 2870.076 kb on - strand, within Rru_A2470 at 2870.076 kb on - strand, within Rru_A2470 at 2870.076 kb on - strand, within Rru_A2470 at 2870.076 kb on - strand, within Rru_A2470 at 2870.076 kb on - strand, within Rru_A2470 at 2870.076 kb on - strand, within Rru_A2470 at 2870.076 kb on - strand, within Rru_A2470 at 2870.077 kb on + strand, within Rru_A2470 at 2870.077 kb on + strand, within Rru_A2470 at 2870.077 kb on + strand, within Rru_A2470 at 2870.078 kb on - strand, within Rru_A2470 at 2870.078 kb on - strand, within Rru_A2470 at 2870.078 kb on - strand, within Rru_A2470 at 2870.168 kb on + strand at 2870.189 kb on + strand at 2870.189 kb on + strand at 2870.189 kb on + strand at 2870.189 kb on + strand at 2870.190 kb on - strand at 2870.190 kb on - strand at 2870.236 kb on + strand at 2870.436 kb on + strand at 2870.437 kb on - strand at 2870.437 kb on - strand at 2870.437 kb on - strand at 2870.703 kb on + strand at 2870.753 kb on - strand at 2870.765 kb on - strand at 2870.779 kb on + strand at 2870.779 kb on + strand at 2870.779 kb on + strand at 2870.780 kb on - strand at 2870.965 kb on + strand, within Rru_A2472 at 2870.966 kb on - strand, within Rru_A2472 at 2871.037 kb on + strand, within Rru_A2472 at 2871.043 kb on + strand, within Rru_A2472 at 2871.044 kb on - strand, within Rru_A2472 at 2871.044 kb on - strand, within Rru_A2472 at 2871.044 kb on - strand, within Rru_A2472 at 2871.101 kb on - strand, within Rru_A2472 at 2871.101 kb on - strand, within Rru_A2472 at 2871.101 kb on - strand, within Rru_A2472 at 2871.103 kb on + strand, within Rru_A2472 at 2871.158 kb on + strand, within Rru_A2472 at 2871.159 kb on - strand, within Rru_A2472 at 2871.159 kb on - strand, within Rru_A2472 at 2871.176 kb on + strand, within Rru_A2472 at 2871.177 kb on - strand, within Rru_A2472 at 2871.177 kb on - strand, within Rru_A2472 at 2871.178 kb on + strand, within Rru_A2472 at 2871.178 kb on + strand, within Rru_A2472 at 2871.179 kb on - strand, within Rru_A2472 at 2871.179 kb on - strand, within Rru_A2472 at 2871.558 kb on + strand at 2871.558 kb on + strand at 2871.558 kb on + strand at 2871.562 kb on + strand at 2871.562 kb on + strand at 2871.562 kb on + strand at 2871.563 kb on - strand at 2871.587 kb on + strand at 2871.588 kb on - strand at 2871.588 kb on - strand at 2871.588 kb on - strand at 2871.603 kb on + strand at 2871.763 kb on + strand at 2871.763 kb on + strand at 2871.763 kb on + strand at 2871.764 kb on - strand at 2871.764 kb on - strand at 2871.764 kb on - strand at 2871.764 kb on - strand at 2871.764 kb on - strand at 2871.999 kb on - strand, within Rru_A2473 at 2872.064 kb on + strand, within Rru_A2473 at 2872.065 kb on - strand, within Rru_A2473 at 2872.068 kb on + strand, within Rru_A2473 at 2872.068 kb on + strand, within Rru_A2473 at 2872.068 kb on + strand, within Rru_A2473 at 2872.068 kb on + strand, within Rru_A2473 at 2872.068 kb on + strand, within Rru_A2473 at 2872.068 kb on + strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.069 kb on - strand, within Rru_A2473 at 2872.244 kb on + strand, within Rru_A2473 at 2872.244 kb on + strand, within Rru_A2473 at 2872.245 kb on - strand, within Rru_A2473 at 2872.245 kb on - strand, within Rru_A2473 at 2872.245 kb on - strand, within Rru_A2473 at 2872.245 kb on - strand, within Rru_A2473 at 2872.245 kb on - strand, within Rru_A2473 at 2872.246 kb on + strand, within Rru_A2473 at 2872.246 kb on + strand, within Rru_A2473 at 2872.247 kb on - strand, within Rru_A2473 at 2872.247 kb on - strand, within Rru_A2473 at 2872.247 kb on - strand, within Rru_A2473 at 2872.247 kb on - strand, within Rru_A2473 at 2872.247 kb on - strand, within Rru_A2473 at 2872.280 kb on - strand, within Rru_A2473 at 2872.280 kb on - strand, within Rru_A2473
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 2,870,054 + Rru_A2470 0.88 -2.1 2,870,054 + Rru_A2470 0.88 -0.9 2,870,055 - Rru_A2470 0.88 -2.9 2,870,075 + Rru_A2470 0.89 +0.1 2,870,075 + Rru_A2470 0.89 +0.8 2,870,075 + Rru_A2470 0.89 -0.9 2,870,075 + Rru_A2470 0.89 +0.1 2,870,075 + Rru_A2470 0.89 +0.1 2,870,075 + Rru_A2470 0.89 -2.9 2,870,075 + Rru_A2470 0.89 -1.9 2,870,075 + Rru_A2470 0.89 +1.1 2,870,075 + Rru_A2470 0.89 -0.2 2,870,076 - Rru_A2470 0.89 +1.4 2,870,076 - Rru_A2470 0.89 +0.1 2,870,076 - Rru_A2470 0.89 -1.3 2,870,076 - Rru_A2470 0.89 -0.7 2,870,076 - Rru_A2470 0.89 -0.9 2,870,076 - Rru_A2470 0.89 +0.1 2,870,076 - Rru_A2470 0.89 -1.6 2,870,076 - Rru_A2470 0.89 -2.5 2,870,077 + Rru_A2470 0.89 -1.7 2,870,077 + Rru_A2470 0.89 -0.4 2,870,077 + Rru_A2470 0.89 +0.4 2,870,078 - Rru_A2470 0.89 +0.1 2,870,078 - Rru_A2470 0.89 -1.5 2,870,078 - Rru_A2470 0.89 -1.5 2,870,168 + +1.6 2,870,189 + -1.1 2,870,189 + +0.1 2,870,189 + +1.1 2,870,189 + -1.2 2,870,190 - -2.0 2,870,190 - +0.1 2,870,236 + -0.6 2,870,436 + -0.9 2,870,437 - -2.1 2,870,437 - -2.0 2,870,437 - -1.7 2,870,703 + +0.1 2,870,753 - -0.9 2,870,765 - +0.8 2,870,779 + -3.2 2,870,779 + +0.1 2,870,779 + -1.7 2,870,780 - +0.1 2,870,965 + Rru_A2472 0.32 +0.1 2,870,966 - Rru_A2472 0.32 -1.3 2,871,037 + Rru_A2472 0.43 +0.1 2,871,043 + Rru_A2472 0.44 -2.0 2,871,044 - Rru_A2472 0.44 -0.9 2,871,044 - Rru_A2472 0.44 -2.8 2,871,044 - Rru_A2472 0.44 +0.1 2,871,101 - Rru_A2472 0.53 -2.9 2,871,101 - Rru_A2472 0.53 -1.6 2,871,101 - Rru_A2472 0.53 +0.1 2,871,103 + Rru_A2472 0.54 +0.1 2,871,158 + Rru_A2472 0.62 -2.7 2,871,159 - Rru_A2472 0.63 +0.1 2,871,159 - Rru_A2472 0.63 -1.6 2,871,176 + Rru_A2472 0.65 -0.5 2,871,177 - Rru_A2472 0.65 -0.7 2,871,177 - Rru_A2472 0.65 -2.9 2,871,178 + Rru_A2472 0.66 +0.1 2,871,178 + Rru_A2472 0.66 +0.1 2,871,179 - Rru_A2472 0.66 -3.8 2,871,179 - Rru_A2472 0.66 -2.3 2,871,558 + +0.1 2,871,558 + -3.3 2,871,558 + -1.8 2,871,562 + +0.1 2,871,562 + -1.9 2,871,562 + +0.1 2,871,563 - -2.1 2,871,587 + -1.7 2,871,588 - -2.6 2,871,588 - -0.5 2,871,588 - +0.1 2,871,603 + -1.0 2,871,763 + -0.6 2,871,763 + -1.9 2,871,763 + +2.0 2,871,764 - -1.2 2,871,764 - -2.7 2,871,764 - -2.7 2,871,764 - -1.9 2,871,764 - +0.1 2,871,999 - Rru_A2473 0.22 -1.5 2,872,064 + Rru_A2473 0.26 -1.0 2,872,065 - Rru_A2473 0.26 -0.2 2,872,068 + Rru_A2473 0.27 +0.8 2,872,068 + Rru_A2473 0.27 -0.0 2,872,068 + Rru_A2473 0.27 +0.1 2,872,068 + Rru_A2473 0.27 +2.1 2,872,068 + Rru_A2473 0.27 +0.1 2,872,068 + Rru_A2473 0.27 -1.8 2,872,069 - Rru_A2473 0.27 +0.1 2,872,069 - Rru_A2473 0.27 +0.1 2,872,069 - Rru_A2473 0.27 -1.9 2,872,069 - Rru_A2473 0.27 -1.9 2,872,069 - Rru_A2473 0.27 -0.8 2,872,069 - Rru_A2473 0.27 -0.4 2,872,069 - Rru_A2473 0.27 -1.7 2,872,069 - Rru_A2473 0.27 +0.1 2,872,069 - Rru_A2473 0.27 +0.1 2,872,069 - Rru_A2473 0.27 +0.1 2,872,069 - Rru_A2473 0.27 +0.1 2,872,244 + Rru_A2473 0.37 -2.2 2,872,244 + Rru_A2473 0.37 +0.1 2,872,245 - Rru_A2473 0.37 -2.8 2,872,245 - Rru_A2473 0.37 -1.7 2,872,245 - Rru_A2473 0.37 +0.1 2,872,245 - Rru_A2473 0.37 +0.4 2,872,245 - Rru_A2473 0.37 +0.1 2,872,246 + Rru_A2473 0.37 -1.1 2,872,246 + Rru_A2473 0.37 +0.1 2,872,247 - Rru_A2473 0.37 -0.9 2,872,247 - Rru_A2473 0.37 -1.5 2,872,247 - Rru_A2473 0.37 +0.1 2,872,247 - Rru_A2473 0.37 -1.7 2,872,247 - Rru_A2473 0.37 +0.1 2,872,280 - Rru_A2473 0.39 -3.6 2,872,280 - Rru_A2473 0.39 -0.7
Or see this region's nucleotide sequence