Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2463 and Rru_A2464 are separated by 136 nucleotides Rru_A2464 and Rru_A2465 are separated by 120 nucleotides
Rru_A2463: Rru_A2463 - N-formylglutamate amidohydrolase (NCBI), at 2,862,473 to 2,863,288
_A2463
Rru_A2464: Rru_A2464 - Hydroxypyruvate reductase (NCBI), at 2,863,425 to 2,864,690
_A2464
Rru_A2465: Rru_A2465 - Pyruvate kinase (NCBI), at 2,864,811 to 2,866,247
_A2465
Position (kb)
2863
2864
2865 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2862.492 kb on + strand at 2862.493 kb on - strand at 2862.513 kb on - strand at 2862.631 kb on + strand, within Rru_A2463 at 2862.632 kb on - strand, within Rru_A2463 at 2862.663 kb on + strand, within Rru_A2463 at 2862.750 kb on + strand, within Rru_A2463 at 2862.750 kb on + strand, within Rru_A2463 at 2862.750 kb on + strand, within Rru_A2463 at 2862.751 kb on - strand, within Rru_A2463 at 2862.751 kb on - strand, within Rru_A2463 at 2862.751 kb on - strand, within Rru_A2463 at 2862.805 kb on + strand, within Rru_A2463 at 2862.805 kb on + strand, within Rru_A2463 at 2862.806 kb on - strand, within Rru_A2463 at 2862.806 kb on - strand, within Rru_A2463 at 2862.806 kb on - strand, within Rru_A2463 at 2862.806 kb on - strand, within Rru_A2463 at 2862.879 kb on + strand, within Rru_A2463 at 2862.880 kb on - strand, within Rru_A2463 at 2863.023 kb on + strand, within Rru_A2463 at 2863.023 kb on + strand, within Rru_A2463 at 2863.187 kb on + strand, within Rru_A2463 at 2863.187 kb on + strand, within Rru_A2463 at 2863.188 kb on - strand, within Rru_A2463 at 2863.334 kb on + strand at 2864.068 kb on - strand, within Rru_A2464 at 2864.375 kb on + strand, within Rru_A2464 at 2864.456 kb on + strand, within Rru_A2464 at 2864.456 kb on + strand, within Rru_A2464 at 2864.457 kb on - strand, within Rru_A2464
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 2,862,492 + -1.3 2,862,493 - -0.9 2,862,513 - +0.1 2,862,631 + Rru_A2463 0.19 -1.2 2,862,632 - Rru_A2463 0.19 -0.9 2,862,663 + Rru_A2463 0.23 -2.6 2,862,750 + Rru_A2463 0.34 -0.5 2,862,750 + Rru_A2463 0.34 -1.3 2,862,750 + Rru_A2463 0.34 +0.1 2,862,751 - Rru_A2463 0.34 +0.1 2,862,751 - Rru_A2463 0.34 -2.1 2,862,751 - Rru_A2463 0.34 -1.9 2,862,805 + Rru_A2463 0.41 -1.7 2,862,805 + Rru_A2463 0.41 -0.9 2,862,806 - Rru_A2463 0.41 +0.1 2,862,806 - Rru_A2463 0.41 +0.1 2,862,806 - Rru_A2463 0.41 +0.1 2,862,806 - Rru_A2463 0.41 -0.4 2,862,879 + Rru_A2463 0.50 +0.1 2,862,880 - Rru_A2463 0.50 +0.1 2,863,023 + Rru_A2463 0.67 -2.9 2,863,023 + Rru_A2463 0.67 +0.5 2,863,187 + Rru_A2463 0.88 -2.9 2,863,187 + Rru_A2463 0.88 -2.2 2,863,188 - Rru_A2463 0.88 -1.9 2,863,334 + -1.7 2,864,068 - Rru_A2464 0.51 +0.1 2,864,375 + Rru_A2464 0.75 -1.7 2,864,456 + Rru_A2464 0.81 -1.9 2,864,456 + Rru_A2464 0.81 -1.3 2,864,457 - Rru_A2464 0.82 -2.5
Or see this region's nucleotide sequence