Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2464

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2463 and Rru_A2464 are separated by 136 nucleotidesRru_A2464 and Rru_A2465 are separated by 120 nucleotides Rru_A2463: Rru_A2463 - N-formylglutamate amidohydrolase (NCBI), at 2,862,473 to 2,863,288 _A2463 Rru_A2464: Rru_A2464 - Hydroxypyruvate reductase (NCBI), at 2,863,425 to 2,864,690 _A2464 Rru_A2465: Rru_A2465 - Pyruvate kinase (NCBI), at 2,864,811 to 2,866,247 _A2465 Position (kb) 2863 2864 2865Strain fitness (log2 ratio) -3 -2 -1 0 1at 2862.492 kb on + strandat 2862.493 kb on - strandat 2862.513 kb on - strandat 2862.631 kb on + strand, within Rru_A2463at 2862.632 kb on - strand, within Rru_A2463at 2862.663 kb on + strand, within Rru_A2463at 2862.750 kb on + strand, within Rru_A2463at 2862.750 kb on + strand, within Rru_A2463at 2862.750 kb on + strand, within Rru_A2463at 2862.751 kb on - strand, within Rru_A2463at 2862.751 kb on - strand, within Rru_A2463at 2862.751 kb on - strand, within Rru_A2463at 2862.805 kb on + strand, within Rru_A2463at 2862.805 kb on + strand, within Rru_A2463at 2862.806 kb on - strand, within Rru_A2463at 2862.806 kb on - strand, within Rru_A2463at 2862.806 kb on - strand, within Rru_A2463at 2862.806 kb on - strand, within Rru_A2463at 2862.879 kb on + strand, within Rru_A2463at 2862.880 kb on - strand, within Rru_A2463at 2863.023 kb on + strand, within Rru_A2463at 2863.023 kb on + strand, within Rru_A2463at 2863.187 kb on + strand, within Rru_A2463at 2863.187 kb on + strand, within Rru_A2463at 2863.188 kb on - strand, within Rru_A2463at 2863.334 kb on + strandat 2864.068 kb on - strand, within Rru_A2464at 2864.375 kb on + strand, within Rru_A2464at 2864.456 kb on + strand, within Rru_A2464at 2864.456 kb on + strand, within Rru_A2464at 2864.457 kb on - strand, within Rru_A2464

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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2,862,492 + -1.3
2,862,493 - -0.9
2,862,513 - +0.1
2,862,631 + Rru_A2463 0.19 -1.2
2,862,632 - Rru_A2463 0.19 -0.9
2,862,663 + Rru_A2463 0.23 -2.6
2,862,750 + Rru_A2463 0.34 -0.5
2,862,750 + Rru_A2463 0.34 -1.3
2,862,750 + Rru_A2463 0.34 +0.1
2,862,751 - Rru_A2463 0.34 +0.1
2,862,751 - Rru_A2463 0.34 -2.1
2,862,751 - Rru_A2463 0.34 -1.9
2,862,805 + Rru_A2463 0.41 -1.7
2,862,805 + Rru_A2463 0.41 -0.9
2,862,806 - Rru_A2463 0.41 +0.1
2,862,806 - Rru_A2463 0.41 +0.1
2,862,806 - Rru_A2463 0.41 +0.1
2,862,806 - Rru_A2463 0.41 -0.4
2,862,879 + Rru_A2463 0.50 +0.1
2,862,880 - Rru_A2463 0.50 +0.1
2,863,023 + Rru_A2463 0.67 -2.9
2,863,023 + Rru_A2463 0.67 +0.5
2,863,187 + Rru_A2463 0.88 -2.9
2,863,187 + Rru_A2463 0.88 -2.2
2,863,188 - Rru_A2463 0.88 -1.9
2,863,334 + -1.7
2,864,068 - Rru_A2464 0.51 +0.1
2,864,375 + Rru_A2464 0.75 -1.7
2,864,456 + Rru_A2464 0.81 -1.9
2,864,456 + Rru_A2464 0.81 -1.3
2,864,457 - Rru_A2464 0.82 -2.5

Or see this region's nucleotide sequence