Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2272

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2270 and Rru_A2271 are separated by 48 nucleotidesRru_A2271 and Rru_A2272 are separated by 511 nucleotidesRru_A2272 and Rru_A2273 are separated by 57 nucleotidesRru_A2273 and Rru_A2274 overlap by 4 nucleotides Rru_A2270: Rru_A2270 - Nitrogen-fixing NifU-like (NCBI), at 2,630,304 to 2,630,603 _A2270 Rru_A2271: Rru_A2271 - HesB/YadR/YfhF (NCBI), at 2,630,652 to 2,630,984 _A2271 Rru_A2272: Rru_A2272 - TspO and MBR related proteins (NCBI), at 2,631,496 to 2,632,062 _A2272 Rru_A2273: Rru_A2273 - ABC transporter component (NCBI), at 2,632,120 to 2,632,953 _A2273 Rru_A2274: Rru_A2274 - ABC transporter component (NCBI), at 2,632,950 to 2,633,735 _A2274 Position (kb) 2631 2632 2633Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2630.945 kb on + strand, within Rru_A2271at 2630.945 kb on + strand, within Rru_A2271at 2630.945 kb on + strand, within Rru_A2271at 2630.946 kb on - strand, within Rru_A2271at 2631.068 kb on - strandat 2631.317 kb on + strandat 2631.318 kb on - strandat 2631.379 kb on + strandat 2631.380 kb on - strandat 2631.496 kb on - strandat 2631.655 kb on + strand, within Rru_A2272at 2631.724 kb on + strand, within Rru_A2272at 2631.724 kb on + strand, within Rru_A2272at 2631.724 kb on + strand, within Rru_A2272at 2631.724 kb on + strand, within Rru_A2272at 2631.724 kb on + strand, within Rru_A2272at 2631.724 kb on + strand, within Rru_A2272at 2631.725 kb on - strand, within Rru_A2272at 2631.725 kb on - strand, within Rru_A2272at 2631.956 kb on - strand, within Rru_A2272at 2632.015 kb on + strandat 2632.016 kb on - strandat 2632.074 kb on + strandat 2632.074 kb on + strandat 2632.096 kb on + strandat 2632.097 kb on - strandat 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.337 kb on + strand, within Rru_A2273at 2632.338 kb on - strand, within Rru_A2273at 2632.338 kb on - strand, within Rru_A2273at 2632.549 kb on + strand, within Rru_A2273at 2632.550 kb on - strand, within Rru_A2273at 2632.914 kb on - strandat 2632.957 kb on - strandat 2632.972 kb on + strandat 2632.973 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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2,630,945 + Rru_A2271 0.88 +0.1
2,630,945 + Rru_A2271 0.88 -1.2
2,630,945 + Rru_A2271 0.88 -1.5
2,630,946 - Rru_A2271 0.88 -0.7
2,631,068 - -1.3
2,631,317 + +0.1
2,631,318 - -1.0
2,631,379 + +0.1
2,631,380 - +0.1
2,631,496 - +0.1
2,631,655 + Rru_A2272 0.28 -2.9
2,631,724 + Rru_A2272 0.40 -1.3
2,631,724 + Rru_A2272 0.40 +0.1
2,631,724 + Rru_A2272 0.40 +0.1
2,631,724 + Rru_A2272 0.40 -1.7
2,631,724 + Rru_A2272 0.40 +0.1
2,631,724 + Rru_A2272 0.40 +0.1
2,631,725 - Rru_A2272 0.40 -1.7
2,631,725 - Rru_A2272 0.40 -2.1
2,631,956 - Rru_A2272 0.81 -1.2
2,632,015 + +0.1
2,632,016 - -2.3
2,632,074 + +0.1
2,632,074 + +0.1
2,632,096 + +2.6
2,632,097 - +0.1
2,632,337 + Rru_A2273 0.26 -2.1
2,632,337 + Rru_A2273 0.26 +0.0
2,632,337 + Rru_A2273 0.26 -2.3
2,632,337 + Rru_A2273 0.26 +0.1
2,632,337 + Rru_A2273 0.26 +0.1
2,632,337 + Rru_A2273 0.26 +0.1
2,632,338 - Rru_A2273 0.26 +0.1
2,632,338 - Rru_A2273 0.26 -3.3
2,632,549 + Rru_A2273 0.51 -3.2
2,632,550 - Rru_A2273 0.52 -0.9
2,632,914 - -1.1
2,632,957 - -0.9
2,632,972 + -0.9
2,632,973 - -1.8

Or see this region's nucleotide sequence