Experiment: acetate; Light intensity 38 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Rru_A2270 and Rru_A2271 are separated by 48 nucleotides Rru_A2271 and Rru_A2272 are separated by 511 nucleotides Rru_A2272 and Rru_A2273 are separated by 57 nucleotides Rru_A2273 and Rru_A2274 overlap by 4 nucleotides
Rru_A2270: Rru_A2270 - Nitrogen-fixing NifU-like (NCBI), at 2,630,304 to 2,630,603
_A2270
Rru_A2271: Rru_A2271 - HesB/YadR/YfhF (NCBI), at 2,630,652 to 2,630,984
_A2271
Rru_A2272: Rru_A2272 - TspO and MBR related proteins (NCBI), at 2,631,496 to 2,632,062
_A2272
Rru_A2273: Rru_A2273 - ABC transporter component (NCBI), at 2,632,120 to 2,632,953
_A2273
Rru_A2274: Rru_A2274 - ABC transporter component (NCBI), at 2,632,950 to 2,633,735
_A2274
Position (kb)
2631
2632
2633 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2630.945 kb on + strand, within Rru_A2271 at 2630.945 kb on + strand, within Rru_A2271 at 2630.945 kb on + strand, within Rru_A2271 at 2630.946 kb on - strand, within Rru_A2271 at 2631.068 kb on - strand at 2631.317 kb on + strand at 2631.318 kb on - strand at 2631.379 kb on + strand at 2631.380 kb on - strand at 2631.496 kb on - strand at 2631.655 kb on + strand, within Rru_A2272 at 2631.724 kb on + strand, within Rru_A2272 at 2631.724 kb on + strand, within Rru_A2272 at 2631.724 kb on + strand, within Rru_A2272 at 2631.724 kb on + strand, within Rru_A2272 at 2631.724 kb on + strand, within Rru_A2272 at 2631.724 kb on + strand, within Rru_A2272 at 2631.725 kb on - strand, within Rru_A2272 at 2631.725 kb on - strand, within Rru_A2272 at 2631.956 kb on - strand, within Rru_A2272 at 2632.015 kb on + strand at 2632.016 kb on - strand at 2632.074 kb on + strand at 2632.074 kb on + strand at 2632.096 kb on + strand at 2632.097 kb on - strand at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.337 kb on + strand, within Rru_A2273 at 2632.338 kb on - strand, within Rru_A2273 at 2632.338 kb on - strand, within Rru_A2273 at 2632.549 kb on + strand, within Rru_A2273 at 2632.550 kb on - strand, within Rru_A2273 at 2632.914 kb on - strand at 2632.957 kb on - strand at 2632.972 kb on + strand at 2632.973 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM remove 2,630,945 + Rru_A2271 0.88 +0.1 2,630,945 + Rru_A2271 0.88 -1.2 2,630,945 + Rru_A2271 0.88 -1.5 2,630,946 - Rru_A2271 0.88 -0.7 2,631,068 - -1.3 2,631,317 + +0.1 2,631,318 - -1.0 2,631,379 + +0.1 2,631,380 - +0.1 2,631,496 - +0.1 2,631,655 + Rru_A2272 0.28 -2.9 2,631,724 + Rru_A2272 0.40 -1.3 2,631,724 + Rru_A2272 0.40 +0.1 2,631,724 + Rru_A2272 0.40 +0.1 2,631,724 + Rru_A2272 0.40 -1.7 2,631,724 + Rru_A2272 0.40 +0.1 2,631,724 + Rru_A2272 0.40 +0.1 2,631,725 - Rru_A2272 0.40 -1.7 2,631,725 - Rru_A2272 0.40 -2.1 2,631,956 - Rru_A2272 0.81 -1.2 2,632,015 + +0.1 2,632,016 - -2.3 2,632,074 + +0.1 2,632,074 + +0.1 2,632,096 + +2.6 2,632,097 - +0.1 2,632,337 + Rru_A2273 0.26 -2.1 2,632,337 + Rru_A2273 0.26 +0.0 2,632,337 + Rru_A2273 0.26 -2.3 2,632,337 + Rru_A2273 0.26 +0.1 2,632,337 + Rru_A2273 0.26 +0.1 2,632,337 + Rru_A2273 0.26 +0.1 2,632,338 - Rru_A2273 0.26 +0.1 2,632,338 - Rru_A2273 0.26 -3.3 2,632,549 + Rru_A2273 0.51 -3.2 2,632,550 - Rru_A2273 0.52 -0.9 2,632,914 - -1.1 2,632,957 - -0.9 2,632,972 + -0.9 2,632,973 - -1.8
Or see this region's nucleotide sequence