Strain Fitness in Rhodospirillum rubrum S1H around Rru_A2006

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A2005 and Rru_A2006 are separated by 12 nucleotidesRru_A2006 and Rru_A2007 are separated by 114 nucleotides Rru_A2005: Rru_A2005 - Glutaryl-CoA dehydrogenase (NCBI), at 2,316,143 to 2,317,330 _A2005 Rru_A2006: Rru_A2006 - L-carnitine dehydratase/bile acid-inducible protein F (NCBI), at 2,317,343 to 2,318,566 _A2006 Rru_A2007: Rru_A2007 - Protein of unknown function DUF6, transmembrane (NCBI), at 2,318,681 to 2,319,718 _A2007 Position (kb) 2317 2318 2319Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2316.360 kb on - strand, within Rru_A2005at 2316.389 kb on + strand, within Rru_A2005at 2316.479 kb on + strand, within Rru_A2005at 2316.480 kb on - strand, within Rru_A2005at 2316.480 kb on - strand, within Rru_A2005at 2316.480 kb on - strand, within Rru_A2005at 2316.485 kb on + strand, within Rru_A2005at 2316.485 kb on + strand, within Rru_A2005at 2316.486 kb on - strand, within Rru_A2005at 2316.486 kb on - strand, within Rru_A2005at 2316.965 kb on + strand, within Rru_A2005at 2316.965 kb on + strand, within Rru_A2005at 2316.965 kb on + strand, within Rru_A2005at 2316.965 kb on + strand, within Rru_A2005at 2316.966 kb on - strand, within Rru_A2005at 2316.966 kb on - strand, within Rru_A2005at 2316.966 kb on - strand, within Rru_A2005at 2316.967 kb on + strand, within Rru_A2005at 2316.968 kb on - strand, within Rru_A2005at 2317.016 kb on - strand, within Rru_A2005at 2317.255 kb on + strandat 2317.255 kb on + strandat 2317.255 kb on + strandat 2317.256 kb on - strandat 2317.256 kb on - strandat 2317.256 kb on - strandat 2317.256 kb on - strandat 2317.256 kb on - strandat 2317.259 kb on + strandat 2317.259 kb on + strandat 2317.259 kb on + strandat 2317.259 kb on + strandat 2317.260 kb on - strandat 2317.328 kb on + strandat 2317.328 kb on + strandat 2317.328 kb on + strandat 2317.328 kb on + strandat 2317.329 kb on - strandat 2317.538 kb on + strand, within Rru_A2006at 2317.538 kb on + strand, within Rru_A2006at 2317.583 kb on - strand, within Rru_A2006at 2317.676 kb on + strand, within Rru_A2006at 2317.724 kb on + strand, within Rru_A2006at 2317.724 kb on + strand, within Rru_A2006at 2317.724 kb on + strand, within Rru_A2006at 2317.724 kb on + strand, within Rru_A2006at 2317.724 kb on + strand, within Rru_A2006at 2317.724 kb on + strand, within Rru_A2006at 2317.725 kb on - strand, within Rru_A2006at 2317.898 kb on + strand, within Rru_A2006at 2317.899 kb on - strand, within Rru_A2006at 2318.068 kb on + strand, within Rru_A2006at 2318.326 kb on + strand, within Rru_A2006at 2318.327 kb on - strand, within Rru_A2006at 2318.327 kb on - strand, within Rru_A2006at 2318.329 kb on - strand, within Rru_A2006at 2318.436 kb on + strand, within Rru_A2006at 2318.436 kb on + strand, within Rru_A2006at 2318.488 kb on + strandat 2318.488 kb on + strandat 2318.489 kb on - strandat 2318.578 kb on - strandat 2318.619 kb on + strandat 2319.144 kb on + strand, within Rru_A2007at 2319.144 kb on + strand, within Rru_A2007at 2319.144 kb on + strand, within Rru_A2007at 2319.144 kb on + strand, within Rru_A2007at 2319.144 kb on + strand, within Rru_A2007at 2319.144 kb on + strand, within Rru_A2007at 2319.145 kb on - strand, within Rru_A2007at 2319.145 kb on - strand, within Rru_A2007at 2319.145 kb on - strand, within Rru_A2007at 2319.145 kb on - strand, within Rru_A2007at 2319.145 kb on - strand, within Rru_A2007at 2319.558 kb on + strand, within Rru_A2007at 2319.558 kb on + strand, within Rru_A2007at 2319.558 kb on + strand, within Rru_A2007at 2319.558 kb on + strand, within Rru_A2007at 2319.559 kb on - strand, within Rru_A2007at 2319.559 kb on - strand, within Rru_A2007at 2319.559 kb on - strand, within Rru_A2007at 2319.559 kb on - strand, within Rru_A2007

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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2,316,360 - Rru_A2005 0.18 +0.0
2,316,389 + Rru_A2005 0.21 -1.1
2,316,479 + Rru_A2005 0.28 -0.8
2,316,480 - Rru_A2005 0.28 -2.0
2,316,480 - Rru_A2005 0.28 -2.4
2,316,480 - Rru_A2005 0.28 -2.7
2,316,485 + Rru_A2005 0.29 -2.3
2,316,485 + Rru_A2005 0.29 -1.1
2,316,486 - Rru_A2005 0.29 -2.2
2,316,486 - Rru_A2005 0.29 -2.0
2,316,965 + Rru_A2005 0.69 +0.0
2,316,965 + Rru_A2005 0.69 -2.0
2,316,965 + Rru_A2005 0.69 +0.0
2,316,965 + Rru_A2005 0.69 -0.1
2,316,966 - Rru_A2005 0.69 -1.0
2,316,966 - Rru_A2005 0.69 -1.6
2,316,966 - Rru_A2005 0.69 -1.0
2,316,967 + Rru_A2005 0.69 -1.4
2,316,968 - Rru_A2005 0.69 +1.3
2,317,016 - Rru_A2005 0.73 -2.0
2,317,255 + -0.8
2,317,255 + -2.0
2,317,255 + -0.4
2,317,256 - -0.8
2,317,256 - +0.0
2,317,256 - +1.0
2,317,256 - +2.0
2,317,256 - -1.6
2,317,259 + +2.0
2,317,259 + -1.7
2,317,259 + +0.0
2,317,259 + -2.0
2,317,260 - +0.0
2,317,328 + +0.0
2,317,328 + -1.2
2,317,328 + -1.0
2,317,328 + -0.5
2,317,329 - -2.3
2,317,538 + Rru_A2006 0.16 -2.3
2,317,538 + Rru_A2006 0.16 -0.6
2,317,583 - Rru_A2006 0.20 -2.0
2,317,676 + Rru_A2006 0.27 -2.0
2,317,724 + Rru_A2006 0.31 -2.7
2,317,724 + Rru_A2006 0.31 -1.0
2,317,724 + Rru_A2006 0.31 -0.7
2,317,724 + Rru_A2006 0.31 -1.3
2,317,724 + Rru_A2006 0.31 -3.3
2,317,724 + Rru_A2006 0.31 -1.6
2,317,725 - Rru_A2006 0.31 +0.0
2,317,898 + Rru_A2006 0.45 -2.6
2,317,899 - Rru_A2006 0.45 -3.6
2,318,068 + Rru_A2006 0.59 +0.0
2,318,326 + Rru_A2006 0.80 -0.8
2,318,327 - Rru_A2006 0.80 -2.3
2,318,327 - Rru_A2006 0.80 -2.0
2,318,329 - Rru_A2006 0.81 -1.0
2,318,436 + Rru_A2006 0.89 -1.8
2,318,436 + Rru_A2006 0.89 +0.0
2,318,488 + +1.2
2,318,488 + +0.0
2,318,489 - +0.0
2,318,578 - -2.0
2,318,619 + -1.5
2,319,144 + Rru_A2007 0.45 -2.2
2,319,144 + Rru_A2007 0.45 -0.4
2,319,144 + Rru_A2007 0.45 +0.0
2,319,144 + Rru_A2007 0.45 -2.0
2,319,144 + Rru_A2007 0.45 +0.0
2,319,144 + Rru_A2007 0.45 -2.3
2,319,145 - Rru_A2007 0.45 -1.0
2,319,145 - Rru_A2007 0.45 +0.3
2,319,145 - Rru_A2007 0.45 -2.2
2,319,145 - Rru_A2007 0.45 +0.0
2,319,145 - Rru_A2007 0.45 -3.2
2,319,558 + Rru_A2007 0.84 +0.0
2,319,558 + Rru_A2007 0.84 -3.9
2,319,558 + Rru_A2007 0.84 -0.2
2,319,558 + Rru_A2007 0.84 +0.0
2,319,559 - Rru_A2007 0.85 -1.8
2,319,559 - Rru_A2007 0.85 +0.0
2,319,559 - Rru_A2007 0.85 -0.6
2,319,559 - Rru_A2007 0.85 -0.6

Or see this region's nucleotide sequence