Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1932

Experiment: acetate; Light intensity 38 uM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntRru_A1931 and Rru_A1932 are separated by 2 nucleotidesRru_A1932 and Rru_A1933 are separated by 32 nucleotides Rru_A1931: Rru_A1931 - Ferredoxin--nitrite reductase (NCBI), at 2,236,793 to 2,238,463 _A1931 Rru_A1932: Rru_A1932 - hypothetical protein (NCBI), at 2,238,466 to 2,238,798 _A1932 Rru_A1933: Rru_A1933 - Uroporphyrin-III C-methyltransferase (NCBI), at 2,238,831 to 2,240,330 _A1933 Position (kb) 2238 2239Strain fitness (log2 ratio) -2 -1 0 1at 2239.148 kb on - strand, within Rru_A1933at 2239.148 kb on - strand, within Rru_A1933at 2239.148 kb on - strand, within Rru_A1933

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
remove
2,239,148 - Rru_A1933 0.21 +0.6
2,239,148 - Rru_A1933 0.21 -1.9
2,239,148 - Rru_A1933 0.21 -0.9

Or see this region's nucleotide sequence