Strain Fitness in Rhodospirillum rubrum S1H around Rru_A1831

Experiment: acetate; Light intensity 38 uM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRru_A1829 and Rru_A1830 are separated by 189 nucleotidesRru_A1830 and Rru_A1831 are separated by 58 nucleotidesRru_A1831 and Rru_A1832 are separated by 52 nucleotidesRru_A1832 and Rru_A1833 are separated by 245 nucleotides Rru_A1829: Rru_A1829 - Transcriptional Regulator, MucR family (NCBI), at 2,127,525 to 2,127,944 _A1829 Rru_A1830: Rru_A1830 - hypothetical protein (NCBI), at 2,128,134 to 2,128,346 _A1830 Rru_A1831: Rru_A1831 - hypothetical protein (NCBI), at 2,128,405 to 2,128,980 _A1831 Rru_A1832: Rru_A1832 - GTP cyclohydrolase I (NCBI), at 2,129,033 to 2,129,665 _A1832 Rru_A1833: Rru_A1833 - 3-hydroxyisobutyrate dehydrogenase (NCBI), at 2,129,911 to 2,130,801 _A1833 Position (kb) 2128 2129Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2127.492 kb on + strandat 2127.493 kb on - strandat 2127.521 kb on + strandat 2127.521 kb on + strandat 2127.522 kb on - strandat 2127.533 kb on + strandat 2127.566 kb on + strandat 2127.566 kb on + strandat 2127.577 kb on + strand, within Rru_A1829at 2127.594 kb on + strand, within Rru_A1829at 2127.594 kb on + strand, within Rru_A1829at 2127.594 kb on + strand, within Rru_A1829at 2127.594 kb on + strand, within Rru_A1829at 2127.594 kb on + strand, within Rru_A1829at 2127.598 kb on + strand, within Rru_A1829at 2127.598 kb on + strand, within Rru_A1829at 2127.598 kb on + strand, within Rru_A1829at 2127.599 kb on - strand, within Rru_A1829at 2127.599 kb on - strand, within Rru_A1829at 2127.599 kb on - strand, within Rru_A1829at 2127.599 kb on - strand, within Rru_A1829at 2127.599 kb on - strand, within Rru_A1829at 2127.747 kb on + strand, within Rru_A1829at 2127.747 kb on + strand, within Rru_A1829at 2127.748 kb on - strand, within Rru_A1829at 2127.748 kb on - strand, within Rru_A1829at 2127.810 kb on + strand, within Rru_A1829at 2127.810 kb on + strand, within Rru_A1829at 2127.810 kb on + strand, within Rru_A1829at 2127.811 kb on - strand, within Rru_A1829at 2127.882 kb on + strand, within Rru_A1829at 2127.882 kb on + strand, within Rru_A1829at 2127.882 kb on + strand, within Rru_A1829at 2127.882 kb on + strand, within Rru_A1829at 2127.882 kb on + strand, within Rru_A1829at 2127.882 kb on + strand, within Rru_A1829at 2127.882 kb on + strand, within Rru_A1829at 2127.883 kb on - strand, within Rru_A1829at 2127.883 kb on - strand, within Rru_A1829at 2127.883 kb on - strand, within Rru_A1829at 2127.883 kb on - strand, within Rru_A1829at 2127.883 kb on - strand, within Rru_A1829at 2127.883 kb on - strand, within Rru_A1829at 2127.883 kb on - strand, within Rru_A1829at 2127.942 kb on + strandat 2127.943 kb on - strandat 2128.087 kb on - strandat 2128.205 kb on + strand, within Rru_A1830at 2128.361 kb on + strandat 2128.362 kb on - strandat 2128.422 kb on - strandat 2128.422 kb on - strandat 2128.640 kb on + strand, within Rru_A1831at 2128.640 kb on + strand, within Rru_A1831at 2128.640 kb on + strand, within Rru_A1831at 2128.640 kb on + strand, within Rru_A1831at 2128.640 kb on + strand, within Rru_A1831at 2128.640 kb on + strand, within Rru_A1831at 2128.640 kb on + strand, within Rru_A1831at 2128.641 kb on - strand, within Rru_A1831at 2128.641 kb on - strand, within Rru_A1831at 2128.641 kb on - strand, within Rru_A1831at 2128.641 kb on - strand, within Rru_A1831at 2128.641 kb on - strand, within Rru_A1831at 2128.733 kb on + strand, within Rru_A1831at 2128.733 kb on + strand, within Rru_A1831at 2128.733 kb on + strand, within Rru_A1831at 2128.733 kb on + strand, within Rru_A1831at 2128.733 kb on + strand, within Rru_A1831at 2128.734 kb on - strand, within Rru_A1831at 2128.734 kb on - strand, within Rru_A1831at 2128.734 kb on - strand, within Rru_A1831at 2128.734 kb on - strand, within Rru_A1831at 2129.130 kb on + strand, within Rru_A1832at 2129.130 kb on + strand, within Rru_A1832at 2129.317 kb on + strand, within Rru_A1832at 2129.317 kb on + strand, within Rru_A1832at 2129.317 kb on + strand, within Rru_A1832at 2129.319 kb on + strand, within Rru_A1832at 2129.319 kb on + strand, within Rru_A1832at 2129.319 kb on + strand, within Rru_A1832at 2129.319 kb on + strand, within Rru_A1832at 2129.319 kb on + strand, within Rru_A1832at 2129.319 kb on + strand, within Rru_A1832at 2129.320 kb on - strand, within Rru_A1832at 2129.320 kb on - strand, within Rru_A1832at 2129.320 kb on - strand, within Rru_A1832at 2129.320 kb on - strand, within Rru_A1832at 2129.320 kb on - strand, within Rru_A1832at 2129.409 kb on + strand, within Rru_A1832at 2129.410 kb on - strand, within Rru_A1832at 2129.463 kb on + strand, within Rru_A1832at 2129.463 kb on + strand, within Rru_A1832at 2129.546 kb on - strand, within Rru_A1832at 2129.547 kb on + strand, within Rru_A1832at 2129.547 kb on + strand, within Rru_A1832at 2129.547 kb on + strand, within Rru_A1832at 2129.547 kb on + strand, within Rru_A1832at 2129.548 kb on - strand, within Rru_A1832at 2129.548 kb on - strand, within Rru_A1832at 2129.548 kb on - strand, within Rru_A1832at 2129.548 kb on - strand, within Rru_A1832at 2129.548 kb on - strand, within Rru_A1832at 2129.602 kb on - strandat 2129.602 kb on - strandat 2129.604 kb on + strandat 2129.605 kb on - strandat 2129.815 kb on + strandat 2129.815 kb on + strandat 2129.815 kb on + strandat 2129.816 kb on - strandat 2129.820 kb on + strandat 2129.973 kb on + strandat 2129.978 kb on + strandat 2129.978 kb on + strandat 2129.979 kb on - strandat 2129.979 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction acetate; Light intensity 38 uM
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2,127,492 + -2.0
2,127,493 - -1.0
2,127,521 + +0.0
2,127,521 + -0.2
2,127,522 - -1.0
2,127,533 + -1.4
2,127,566 + +0.0
2,127,566 + -0.7
2,127,577 + Rru_A1829 0.12 -0.4
2,127,594 + Rru_A1829 0.16 -0.5
2,127,594 + Rru_A1829 0.16 +1.2
2,127,594 + Rru_A1829 0.16 -0.6
2,127,594 + Rru_A1829 0.16 -1.1
2,127,594 + Rru_A1829 0.16 +0.0
2,127,598 + Rru_A1829 0.17 +0.0
2,127,598 + Rru_A1829 0.17 +0.0
2,127,598 + Rru_A1829 0.17 +0.0
2,127,599 - Rru_A1829 0.18 -2.1
2,127,599 - Rru_A1829 0.18 -0.3
2,127,599 - Rru_A1829 0.18 +0.0
2,127,599 - Rru_A1829 0.18 +0.6
2,127,599 - Rru_A1829 0.18 -1.0
2,127,747 + Rru_A1829 0.53 -1.6
2,127,747 + Rru_A1829 0.53 +0.0
2,127,748 - Rru_A1829 0.53 +0.0
2,127,748 - Rru_A1829 0.53 +0.0
2,127,810 + Rru_A1829 0.68 -3.3
2,127,810 + Rru_A1829 0.68 +0.0
2,127,810 + Rru_A1829 0.68 +0.0
2,127,811 - Rru_A1829 0.68 -0.4
2,127,882 + Rru_A1829 0.85 -1.0
2,127,882 + Rru_A1829 0.85 +1.0
2,127,882 + Rru_A1829 0.85 -1.3
2,127,882 + Rru_A1829 0.85 -1.6
2,127,882 + Rru_A1829 0.85 -1.3
2,127,882 + Rru_A1829 0.85 +0.0
2,127,882 + Rru_A1829 0.85 -0.0
2,127,883 - Rru_A1829 0.85 -2.3
2,127,883 - Rru_A1829 0.85 -1.0
2,127,883 - Rru_A1829 0.85 +0.0
2,127,883 - Rru_A1829 0.85 -2.6
2,127,883 - Rru_A1829 0.85 +0.0
2,127,883 - Rru_A1829 0.85 +0.0
2,127,883 - Rru_A1829 0.85 +0.0
2,127,942 + -1.0
2,127,943 - -2.0
2,128,087 - +2.3
2,128,205 + Rru_A1830 0.33 -2.0
2,128,361 + -1.6
2,128,362 - -2.1
2,128,422 - -2.1
2,128,422 - -1.0
2,128,640 + Rru_A1831 0.41 +0.8
2,128,640 + Rru_A1831 0.41 +0.0
2,128,640 + Rru_A1831 0.41 -2.8
2,128,640 + Rru_A1831 0.41 +0.0
2,128,640 + Rru_A1831 0.41 -1.0
2,128,640 + Rru_A1831 0.41 -1.0
2,128,640 + Rru_A1831 0.41 -1.7
2,128,641 - Rru_A1831 0.41 -1.7
2,128,641 - Rru_A1831 0.41 +0.0
2,128,641 - Rru_A1831 0.41 +1.0
2,128,641 - Rru_A1831 0.41 +0.4
2,128,641 - Rru_A1831 0.41 -1.0
2,128,733 + Rru_A1831 0.57 -1.9
2,128,733 + Rru_A1831 0.57 -2.3
2,128,733 + Rru_A1831 0.57 +0.0
2,128,733 + Rru_A1831 0.57 +0.0
2,128,733 + Rru_A1831 0.57 -1.6
2,128,734 - Rru_A1831 0.57 +0.0
2,128,734 - Rru_A1831 0.57 -1.0
2,128,734 - Rru_A1831 0.57 +0.6
2,128,734 - Rru_A1831 0.57 -1.6
2,129,130 + Rru_A1832 0.15 -1.0
2,129,130 + Rru_A1832 0.15 -2.0
2,129,317 + Rru_A1832 0.45 -0.4
2,129,317 + Rru_A1832 0.45 +0.0
2,129,317 + Rru_A1832 0.45 +0.0
2,129,319 + Rru_A1832 0.45 +0.0
2,129,319 + Rru_A1832 0.45 -1.1
2,129,319 + Rru_A1832 0.45 -0.3
2,129,319 + Rru_A1832 0.45 +0.0
2,129,319 + Rru_A1832 0.45 +1.7
2,129,319 + Rru_A1832 0.45 -1.0
2,129,320 - Rru_A1832 0.45 -1.4
2,129,320 - Rru_A1832 0.45 +0.0
2,129,320 - Rru_A1832 0.45 -1.0
2,129,320 - Rru_A1832 0.45 +0.0
2,129,320 - Rru_A1832 0.45 +0.0
2,129,409 + Rru_A1832 0.59 +0.0
2,129,410 - Rru_A1832 0.60 +0.0
2,129,463 + Rru_A1832 0.68 +0.0
2,129,463 + Rru_A1832 0.68 +0.0
2,129,546 - Rru_A1832 0.81 +0.0
2,129,547 + Rru_A1832 0.81 -1.2
2,129,547 + Rru_A1832 0.81 +0.0
2,129,547 + Rru_A1832 0.81 -1.3
2,129,547 + Rru_A1832 0.81 -3.5
2,129,548 - Rru_A1832 0.81 +0.0
2,129,548 - Rru_A1832 0.81 -1.4
2,129,548 - Rru_A1832 0.81 +0.0
2,129,548 - Rru_A1832 0.81 +0.0
2,129,548 - Rru_A1832 0.81 -1.3
2,129,602 - -1.0
2,129,602 - +0.0
2,129,604 + -2.6
2,129,605 - -0.4
2,129,815 + +0.0
2,129,815 + -1.0
2,129,815 + -1.7
2,129,816 - -1.0
2,129,820 + +0.0
2,129,973 + +0.0
2,129,978 + -2.3
2,129,978 + +0.0
2,129,979 - -1.0
2,129,979 - -1.0

Or see this region's nucleotide sequence